Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04390 and MPMX19_04391 are separated by 222 nucleotides MPMX19_04391 and MPMX19_04392 are separated by 32 nucleotides MPMX19_04392 and MPMX19_04393 are separated by 75 nucleotides
MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517
_04390
MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957
_04391
MPMX19_04392: MPMX19_04392 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 757,990 to 758,598
_04392
MPMX19_04393: MPMX19_04393 - hypothetical protein, at 758,674 to 758,943
_04393
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.214 kb on - strand, within MPMX19_04390 at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.552 kb on + strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.553 kb on - strand at 756.555 kb on + strand at 756.556 kb on - strand at 756.556 kb on - strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.612 kb on + strand at 756.613 kb on - strand at 756.613 kb on - strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.616 kb on + strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.617 kb on - strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.618 kb on + strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.619 kb on - strand at 756.890 kb on + strand, within MPMX19_04391 at 756.891 kb on - strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.899 kb on + strand, within MPMX19_04391 at 756.900 kb on - strand, within MPMX19_04391 at 757.053 kb on - strand, within MPMX19_04391 at 757.137 kb on - strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.406 kb on + strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.407 kb on - strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.472 kb on + strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.473 kb on - strand, within MPMX19_04391 at 757.538 kb on + strand, within MPMX19_04391 at 757.571 kb on + strand, within MPMX19_04391 at 757.572 kb on - strand, within MPMX19_04391 at 757.572 kb on - strand, within MPMX19_04391 at 757.572 kb on - strand, within MPMX19_04391 at 757.581 kb on - strand, within MPMX19_04391 at 757.622 kb on + strand, within MPMX19_04391 at 757.622 kb on + strand, within MPMX19_04391 at 757.622 kb on + strand, within MPMX19_04391 at 757.622 kb on + strand, within MPMX19_04391 at 757.623 kb on - strand, within MPMX19_04391 at 757.623 kb on - strand, within MPMX19_04391 at 757.623 kb on - strand, within MPMX19_04391 at 757.623 kb on - strand, within MPMX19_04391 at 757.623 kb on - strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.628 kb on + strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.629 kb on - strand, within MPMX19_04391 at 757.649 kb on + strand, within MPMX19_04391 at 757.965 kb on + strand at 757.965 kb on + strand at 757.965 kb on + strand at 757.966 kb on - strand at 758.213 kb on - strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.255 kb on + strand, within MPMX19_04392 at 758.255 kb on + strand, within MPMX19_04392 at 758.440 kb on - strand, within MPMX19_04392 at 758.647 kb on + strand at 758.647 kb on + strand at 758.647 kb on + strand at 758.648 kb on - strand at 758.648 kb on - strand at 758.666 kb on + strand at 758.666 kb on + strand at 758.666 kb on + strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.772 kb on + strand, within MPMX19_04393 at 758.773 kb on - strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.831 kb on - strand, within MPMX19_04393 at 758.945 kb on + strand at 758.945 kb on + strand at 758.946 kb on - strand at 758.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 756,213 + MPMX19_04390 0.66 -0.7 756,213 + MPMX19_04390 0.66 +0.4 756,213 + MPMX19_04390 0.66 +0.2 756,213 + MPMX19_04390 0.66 +0.7 756,214 - MPMX19_04390 0.66 -1.4 756,552 + -0.4 756,552 + +0.2 756,552 + +0.2 756,552 + -0.7 756,552 + -1.4 756,552 + +0.0 756,553 - -1.2 756,553 - -1.0 756,553 - +0.2 756,553 - -1.0 756,553 - -1.7 756,553 - +0.0 756,553 - -1.5 756,553 - -1.4 756,555 + -2.0 756,556 - -0.7 756,556 - -0.7 756,612 + -0.9 756,612 + -1.1 756,612 + -1.2 756,612 + +0.4 756,612 + -1.0 756,613 - -0.1 756,613 - -0.8 756,616 + +0.2 756,616 + +0.3 756,616 + +1.0 756,616 + -0.2 756,616 + +0.9 756,616 + -1.2 756,616 + -0.8 756,616 + -2.5 756,616 + +0.4 756,616 + -2.6 756,616 + -0.2 756,617 - -1.3 756,617 - +0.9 756,617 - -0.7 756,617 - -0.5 756,617 - -0.5 756,617 - -1.1 756,617 - -0.3 756,617 - -1.0 756,617 - -1.5 756,617 - +2.2 756,617 - -1.8 756,618 + -1.0 756,618 + -0.2 756,618 + -0.2 756,618 + -0.7 756,618 + -1.5 756,618 + +1.0 756,618 + +0.0 756,618 + -0.8 756,618 + -0.5 756,618 + -1.5 756,618 + -0.5 756,618 + -0.3 756,618 + -0.2 756,619 - -1.0 756,619 - -0.4 756,619 - -0.5 756,619 - -0.7 756,619 - +0.0 756,619 - -1.5 756,619 - +0.3 756,619 - -0.7 756,619 - +0.0 756,890 + MPMX19_04391 0.12 -0.1 756,891 - MPMX19_04391 0.12 -0.3 756,899 + MPMX19_04391 0.13 -1.2 756,899 + MPMX19_04391 0.13 -0.7 756,899 + MPMX19_04391 0.13 -1.4 756,899 + MPMX19_04391 0.13 -1.7 756,900 - MPMX19_04391 0.13 -1.7 757,053 - MPMX19_04391 0.26 -0.4 757,137 - MPMX19_04391 0.33 +0.1 757,406 + MPMX19_04391 0.55 -1.4 757,406 + MPMX19_04391 0.55 +0.3 757,406 + MPMX19_04391 0.55 +0.8 757,406 + MPMX19_04391 0.55 -1.0 757,406 + MPMX19_04391 0.55 -1.0 757,406 + MPMX19_04391 0.55 -0.8 757,406 + MPMX19_04391 0.55 -2.5 757,407 - MPMX19_04391 0.55 -1.6 757,407 - MPMX19_04391 0.55 -2.2 757,407 - MPMX19_04391 0.55 -1.2 757,407 - MPMX19_04391 0.55 -0.5 757,407 - MPMX19_04391 0.55 +0.2 757,407 - MPMX19_04391 0.55 -2.2 757,407 - MPMX19_04391 0.55 -1.1 757,472 + MPMX19_04391 0.60 -2.2 757,472 + MPMX19_04391 0.60 -1.1 757,472 + MPMX19_04391 0.60 -1.7 757,472 + MPMX19_04391 0.60 +0.6 757,472 + MPMX19_04391 0.60 +0.2 757,472 + MPMX19_04391 0.60 +0.1 757,473 - MPMX19_04391 0.60 -2.1 757,473 - MPMX19_04391 0.60 -2.3 757,473 - MPMX19_04391 0.60 -1.1 757,473 - MPMX19_04391 0.60 -0.8 757,473 - MPMX19_04391 0.60 -1.8 757,538 + MPMX19_04391 0.66 -0.7 757,571 + MPMX19_04391 0.68 -2.7 757,572 - MPMX19_04391 0.68 -0.3 757,572 - MPMX19_04391 0.68 -0.6 757,572 - MPMX19_04391 0.68 -0.5 757,581 - MPMX19_04391 0.69 -0.4 757,622 + MPMX19_04391 0.72 -1.2 757,622 + MPMX19_04391 0.72 -2.2 757,622 + MPMX19_04391 0.72 -1.7 757,622 + MPMX19_04391 0.72 -2.1 757,623 - MPMX19_04391 0.72 -0.7 757,623 - MPMX19_04391 0.72 -1.2 757,623 - MPMX19_04391 0.72 +0.0 757,623 - MPMX19_04391 0.72 +0.0 757,623 - MPMX19_04391 0.72 -1.7 757,628 + MPMX19_04391 0.73 -2.6 757,628 + MPMX19_04391 0.73 -0.4 757,628 + MPMX19_04391 0.73 -0.7 757,628 + MPMX19_04391 0.73 -0.3 757,628 + MPMX19_04391 0.73 +0.3 757,628 + MPMX19_04391 0.73 -0.4 757,628 + MPMX19_04391 0.73 -0.9 757,628 + MPMX19_04391 0.73 -2.0 757,628 + MPMX19_04391 0.73 +1.0 757,629 - MPMX19_04391 0.73 -1.2 757,629 - MPMX19_04391 0.73 -0.2 757,629 - MPMX19_04391 0.73 +0.5 757,629 - MPMX19_04391 0.73 -0.4 757,629 - MPMX19_04391 0.73 -2.3 757,629 - MPMX19_04391 0.73 -1.2 757,629 - MPMX19_04391 0.73 -2.8 757,649 + MPMX19_04391 0.75 -1.8 757,965 + +0.4 757,965 + -0.2 757,965 + -0.6 757,966 - -1.7 758,213 - MPMX19_04392 0.37 +0.2 758,233 + MPMX19_04392 0.40 -0.4 758,233 + MPMX19_04392 0.40 -1.5 758,233 + MPMX19_04392 0.40 -0.4 758,233 + MPMX19_04392 0.40 -1.2 758,234 - MPMX19_04392 0.40 -1.0 758,234 - MPMX19_04392 0.40 -1.7 758,234 - MPMX19_04392 0.40 -0.5 758,255 + MPMX19_04392 0.44 -0.5 758,255 + MPMX19_04392 0.44 -1.5 758,440 - MPMX19_04392 0.74 -0.4 758,647 + -0.7 758,647 + -0.4 758,647 + -0.5 758,648 - -0.1 758,648 - +0.5 758,666 + -0.1 758,666 + -1.8 758,666 + -1.2 758,667 - -1.8 758,667 - -0.6 758,667 - -0.4 758,667 - -0.1 758,772 + MPMX19_04393 0.36 -0.4 758,773 - MPMX19_04393 0.37 -0.5 758,830 + MPMX19_04393 0.58 +0.0 758,830 + MPMX19_04393 0.58 -0.1 758,830 + MPMX19_04393 0.58 +0.1 758,830 + MPMX19_04393 0.58 +0.8 758,831 - MPMX19_04393 0.58 -0.7 758,945 + -1.4 758,945 + -0.6 758,946 - +0.6 758,946 - -1.2
Or see this region's nucleotide sequence