Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04198 and MPMX19_04199 are separated by 117 nucleotides MPMX19_04199 and MPMX19_04200 overlap by 8 nucleotides MPMX19_04200 and MPMX19_04201 are separated by 32 nucleotides
MPMX19_04198: MPMX19_04198 - hypothetical protein, at 532,243 to 533,844
_04198
MPMX19_04199: MPMX19_04199 - Pseudaminic acid synthase, at 533,962 to 535,017
_04199
MPMX19_04200: MPMX19_04200 - 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase, at 535,010 to 535,774
_04200
MPMX19_04201: MPMX19_04201 - hypothetical protein, at 535,807 to 536,040
_04201
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.026 kb on + strand, within MPMX19_04198 at 533.026 kb on + strand, within MPMX19_04198 at 533.026 kb on + strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.080 kb on + strand, within MPMX19_04198 at 533.081 kb on - strand, within MPMX19_04198 at 533.081 kb on - strand, within MPMX19_04198 at 533.164 kb on + strand, within MPMX19_04198 at 533.165 kb on - strand, within MPMX19_04198 at 533.203 kb on + strand, within MPMX19_04198 at 533.203 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.788 kb on + strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.842 kb on + strand at 533.842 kb on + strand at 533.843 kb on - strand at 534.004 kb on + strand at 534.004 kb on + strand at 534.005 kb on - strand at 534.005 kb on - strand at 534.005 kb on - strand at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.202 kb on + strand, within MPMX19_04199 at 534.203 kb on - strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.776 kb on - strand, within MPMX19_04199 at 534.811 kb on + strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 535.015 kb on + strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.266 kb on + strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.425 kb on - strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.524 kb on - strand, within MPMX19_04200 at 535.530 kb on - strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 533,026 + MPMX19_04198 0.49 -1.6 533,026 + MPMX19_04198 0.49 +1.0 533,026 + MPMX19_04198 0.49 -0.1 533,027 - MPMX19_04198 0.49 +0.0 533,027 - MPMX19_04198 0.49 +0.2 533,027 - MPMX19_04198 0.49 -0.8 533,080 + MPMX19_04198 0.52 +0.0 533,081 - MPMX19_04198 0.52 -2.1 533,081 - MPMX19_04198 0.52 -2.2 533,164 + MPMX19_04198 0.57 -0.3 533,165 - MPMX19_04198 0.58 +0.5 533,203 + MPMX19_04198 0.60 -0.4 533,203 + MPMX19_04198 0.60 -0.1 533,509 + MPMX19_04198 0.79 +0.3 533,509 + MPMX19_04198 0.79 -1.6 533,509 + MPMX19_04198 0.79 +0.6 533,509 + MPMX19_04198 0.79 +0.1 533,509 + MPMX19_04198 0.79 +0.4 533,509 + MPMX19_04198 0.79 -2.0 533,509 + MPMX19_04198 0.79 -0.8 533,509 + MPMX19_04198 0.79 +0.4 533,509 + MPMX19_04198 0.79 +0.3 533,509 + MPMX19_04198 0.79 -2.3 533,509 + MPMX19_04198 0.79 +0.9 533,509 + MPMX19_04198 0.79 +0.1 533,509 + MPMX19_04198 0.79 -1.2 533,509 + MPMX19_04198 0.79 -0.7 533,509 + MPMX19_04198 0.79 -0.8 533,509 + MPMX19_04198 0.79 -0.2 533,509 + MPMX19_04198 0.79 -0.5 533,509 + MPMX19_04198 0.79 -2.6 533,509 + MPMX19_04198 0.79 +0.3 533,509 + MPMX19_04198 0.79 +1.8 533,509 + MPMX19_04198 0.79 +0.1 533,509 + MPMX19_04198 0.79 -0.3 533,509 + MPMX19_04198 0.79 +0.5 533,509 + MPMX19_04198 0.79 +0.6 533,509 + MPMX19_04198 0.79 -1.2 533,510 - MPMX19_04198 0.79 -2.3 533,510 - MPMX19_04198 0.79 -1.9 533,510 - MPMX19_04198 0.79 -1.6 533,510 - MPMX19_04198 0.79 -0.3 533,510 - MPMX19_04198 0.79 -1.3 533,510 - MPMX19_04198 0.79 +0.6 533,510 - MPMX19_04198 0.79 +0.2 533,510 - MPMX19_04198 0.79 -2.3 533,510 - MPMX19_04198 0.79 -0.1 533,510 - MPMX19_04198 0.79 -0.4 533,510 - MPMX19_04198 0.79 +0.1 533,510 - MPMX19_04198 0.79 -0.7 533,569 + MPMX19_04198 0.83 -0.8 533,569 + MPMX19_04198 0.83 -1.0 533,569 + MPMX19_04198 0.83 -0.2 533,569 + MPMX19_04198 0.83 -1.0 533,569 + MPMX19_04198 0.83 -0.4 533,569 + MPMX19_04198 0.83 +0.0 533,569 + MPMX19_04198 0.83 -1.4 533,570 - MPMX19_04198 0.83 -0.3 533,570 - MPMX19_04198 0.83 -1.9 533,570 - MPMX19_04198 0.83 +0.3 533,570 - MPMX19_04198 0.83 -0.6 533,665 + MPMX19_04198 0.89 -0.4 533,665 + MPMX19_04198 0.89 -0.8 533,665 + MPMX19_04198 0.89 +0.1 533,665 + MPMX19_04198 0.89 -1.3 533,665 + MPMX19_04198 0.89 +0.0 533,665 + MPMX19_04198 0.89 -0.7 533,665 + MPMX19_04198 0.89 -1.0 533,665 + MPMX19_04198 0.89 +0.4 533,666 - MPMX19_04198 0.89 -0.4 533,666 - MPMX19_04198 0.89 +0.4 533,666 - MPMX19_04198 0.89 +0.1 533,666 - MPMX19_04198 0.89 +0.9 533,666 - MPMX19_04198 0.89 -0.6 533,666 - MPMX19_04198 0.89 +0.2 533,788 + +1.6 533,789 - -0.3 533,789 - +0.1 533,789 - -0.3 533,789 - -1.7 533,842 + +0.4 533,842 + -1.1 533,843 - -0.3 534,004 + -1.9 534,004 + -0.2 534,005 - -1.2 534,005 - +0.4 534,005 - +0.0 534,112 + MPMX19_04199 0.14 -3.7 534,112 + MPMX19_04199 0.14 -1.4 534,112 + MPMX19_04199 0.14 -2.2 534,112 + MPMX19_04199 0.14 -1.6 534,112 + MPMX19_04199 0.14 -1.3 534,112 + MPMX19_04199 0.14 -1.4 534,112 + MPMX19_04199 0.14 -0.3 534,112 + MPMX19_04199 0.14 -1.5 534,112 + MPMX19_04199 0.14 +0.3 534,112 + MPMX19_04199 0.14 -1.3 534,112 + MPMX19_04199 0.14 -0.4 534,112 + MPMX19_04199 0.14 -0.7 534,112 + MPMX19_04199 0.14 -0.9 534,112 + MPMX19_04199 0.14 -1.9 534,113 - MPMX19_04199 0.14 +1.2 534,113 - MPMX19_04199 0.14 +0.0 534,113 - MPMX19_04199 0.14 -1.4 534,113 - MPMX19_04199 0.14 -0.8 534,113 - MPMX19_04199 0.14 -2.9 534,113 - MPMX19_04199 0.14 -2.6 534,113 - MPMX19_04199 0.14 -2.8 534,113 - MPMX19_04199 0.14 -3.3 534,113 - MPMX19_04199 0.14 -0.2 534,113 - MPMX19_04199 0.14 -2.9 534,202 + MPMX19_04199 0.23 -0.6 534,203 - MPMX19_04199 0.23 -1.0 534,775 + MPMX19_04199 0.77 -1.2 534,775 + MPMX19_04199 0.77 -0.6 534,775 + MPMX19_04199 0.77 -0.7 534,776 - MPMX19_04199 0.77 +0.6 534,811 + MPMX19_04199 0.80 +0.5 534,812 - MPMX19_04199 0.80 -1.3 534,812 - MPMX19_04199 0.80 -0.2 534,812 - MPMX19_04199 0.80 -1.7 534,826 + MPMX19_04199 0.82 -2.2 534,826 + MPMX19_04199 0.82 -0.3 534,826 + MPMX19_04199 0.82 +0.0 534,826 + MPMX19_04199 0.82 -0.4 534,826 + MPMX19_04199 0.82 -0.4 534,826 + MPMX19_04199 0.82 -0.5 534,826 + MPMX19_04199 0.82 -0.3 534,826 + MPMX19_04199 0.82 -0.2 534,826 + MPMX19_04199 0.82 -2.3 534,826 + MPMX19_04199 0.82 -1.4 534,826 + MPMX19_04199 0.82 -0.4 534,826 + MPMX19_04199 0.82 -2.4 534,826 + MPMX19_04199 0.82 -2.2 534,827 - MPMX19_04199 0.82 -0.3 534,827 - MPMX19_04199 0.82 -0.1 534,827 - MPMX19_04199 0.82 +0.6 534,827 - MPMX19_04199 0.82 -0.8 534,827 - MPMX19_04199 0.82 -1.2 534,827 - MPMX19_04199 0.82 -1.0 534,827 - MPMX19_04199 0.82 -1.2 534,827 - MPMX19_04199 0.82 -2.0 534,827 - MPMX19_04199 0.82 -0.5 534,827 - MPMX19_04199 0.82 -1.2 534,827 - MPMX19_04199 0.82 -1.2 534,827 - MPMX19_04199 0.82 -1.6 534,827 - MPMX19_04199 0.82 -1.2 535,015 + -2.2 535,016 - -0.4 535,016 - +0.2 535,016 - -1.0 535,016 - +1.4 535,016 - -1.6 535,266 + MPMX19_04200 0.33 -1.2 535,267 - MPMX19_04200 0.34 +0.4 535,267 - MPMX19_04200 0.34 -2.2 535,267 - MPMX19_04200 0.34 -2.9 535,267 - MPMX19_04200 0.34 -2.0 535,267 - MPMX19_04200 0.34 -2.1 535,267 - MPMX19_04200 0.34 -0.9 535,267 - MPMX19_04200 0.34 -0.2 535,400 + MPMX19_04200 0.51 +0.2 535,400 + MPMX19_04200 0.51 -1.5 535,400 + MPMX19_04200 0.51 +0.0 535,400 + MPMX19_04200 0.51 -3.0 535,400 + MPMX19_04200 0.51 -0.1 535,400 + MPMX19_04200 0.51 +1.2 535,400 + MPMX19_04200 0.51 -0.6 535,400 + MPMX19_04200 0.51 -0.6 535,400 + MPMX19_04200 0.51 -2.6 535,400 + MPMX19_04200 0.51 -1.3 535,400 + MPMX19_04200 0.51 -2.0 535,400 + MPMX19_04200 0.51 -1.7 535,400 + MPMX19_04200 0.51 -2.6 535,400 + MPMX19_04200 0.51 -0.2 535,401 - MPMX19_04200 0.51 +0.1 535,401 - MPMX19_04200 0.51 -2.4 535,401 - MPMX19_04200 0.51 -2.6 535,401 - MPMX19_04200 0.51 -1.3 535,401 - MPMX19_04200 0.51 -0.8 535,401 - MPMX19_04200 0.51 +0.5 535,425 - MPMX19_04200 0.54 +0.3 535,523 + MPMX19_04200 0.67 -2.6 535,523 + MPMX19_04200 0.67 +0.3 535,523 + MPMX19_04200 0.67 -0.9 535,523 + MPMX19_04200 0.67 -1.4 535,523 + MPMX19_04200 0.67 -1.3 535,524 - MPMX19_04200 0.67 +0.8 535,530 - MPMX19_04200 0.68 -0.3 535,634 + MPMX19_04200 0.82 -0.2 535,634 + MPMX19_04200 0.82 -0.6 535,634 + MPMX19_04200 0.82 -2.6 535,634 + MPMX19_04200 0.82 -2.3 535,634 + MPMX19_04200 0.82 -1.9 535,634 + MPMX19_04200 0.82 -1.3 535,635 - MPMX19_04200 0.82 -1.4 535,635 - MPMX19_04200 0.82 -0.2 535,635 - MPMX19_04200 0.82 +0.0
Or see this region's nucleotide sequence