Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04180 and MPMX19_04181 are separated by 23 nucleotides MPMX19_04181 and MPMX19_04182 are separated by 67 nucleotides
MPMX19_04180: MPMX19_04180 - D-inositol-3-phosphate glycosyltransferase, at 506,132 to 507,334
_04180
MPMX19_04181: MPMX19_04181 - hypothetical protein, at 507,358 to 508,341
_04181
MPMX19_04182: MPMX19_04182 - hypothetical protein, at 508,409 to 509,755
_04182
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.735 kb on + strand, within MPMX19_04180 at 506.735 kb on + strand, within MPMX19_04180 at 506.767 kb on + strand, within MPMX19_04180 at 506.767 kb on + strand, within MPMX19_04180 at 506.768 kb on - strand, within MPMX19_04180 at 506.768 kb on - strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.802 kb on + strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 506.803 kb on - strand, within MPMX19_04180 at 507.110 kb on + strand, within MPMX19_04180 at 507.111 kb on - strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.120 kb on + strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.121 kb on - strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.122 kb on + strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.123 kb on - strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.210 kb on + strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.211 kb on - strand, within MPMX19_04180 at 507.334 kb on + strand at 507.334 kb on + strand at 507.334 kb on + strand at 507.334 kb on + strand at 507.334 kb on + strand at 507.335 kb on - strand at 507.560 kb on + strand, within MPMX19_04181 at 507.560 kb on + strand, within MPMX19_04181 at 507.560 kb on + strand, within MPMX19_04181 at 507.561 kb on - strand, within MPMX19_04181 at 507.561 kb on - strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.662 kb on + strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.663 kb on - strand, within MPMX19_04181 at 507.854 kb on + strand, within MPMX19_04181 at 507.854 kb on + strand, within MPMX19_04181 at 507.855 kb on - strand, within MPMX19_04181 at 507.855 kb on - strand, within MPMX19_04181 at 507.855 kb on - strand, within MPMX19_04181 at 507.855 kb on - strand, within MPMX19_04181 at 508.269 kb on + strand at 508.269 kb on + strand at 508.270 kb on - strand at 508.410 kb on + strand at 508.410 kb on + strand at 508.435 kb on - strand at 508.446 kb on + strand at 508.464 kb on + strand at 508.464 kb on + strand at 508.464 kb on + strand at 508.464 kb on + strand at 508.464 kb on + strand at 508.465 kb on - strand at 508.465 kb on - strand at 508.465 kb on - strand at 508.465 kb on - strand at 508.465 kb on - strand at 508.866 kb on + strand, within MPMX19_04182 at 508.866 kb on + strand, within MPMX19_04182 at 508.867 kb on - strand, within MPMX19_04182 at 508.867 kb on - strand, within MPMX19_04182 at 508.867 kb on - strand, within MPMX19_04182 at 508.881 kb on + strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.882 kb on - strand, within MPMX19_04182 at 508.971 kb on + strand, within MPMX19_04182 at 508.971 kb on + strand, within MPMX19_04182 at 508.972 kb on - strand, within MPMX19_04182 at 508.972 kb on - strand, within MPMX19_04182 at 508.983 kb on + strand, within MPMX19_04182 at 508.983 kb on + strand, within MPMX19_04182 at 508.984 kb on - strand, within MPMX19_04182
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 506,735 + MPMX19_04180 0.50 -0.5 506,735 + MPMX19_04180 0.50 -1.6 506,767 + MPMX19_04180 0.53 +1.6 506,767 + MPMX19_04180 0.53 -0.4 506,768 - MPMX19_04180 0.53 -0.7 506,768 - MPMX19_04180 0.53 -0.6 506,802 + MPMX19_04180 0.56 -1.9 506,802 + MPMX19_04180 0.56 -1.4 506,802 + MPMX19_04180 0.56 -1.6 506,802 + MPMX19_04180 0.56 -0.2 506,802 + MPMX19_04180 0.56 -1.5 506,802 + MPMX19_04180 0.56 +0.6 506,802 + MPMX19_04180 0.56 -0.4 506,803 - MPMX19_04180 0.56 +0.5 506,803 - MPMX19_04180 0.56 -0.1 506,803 - MPMX19_04180 0.56 -0.6 506,803 - MPMX19_04180 0.56 +0.0 506,803 - MPMX19_04180 0.56 +0.6 506,803 - MPMX19_04180 0.56 -1.2 506,803 - MPMX19_04180 0.56 +0.5 506,803 - MPMX19_04180 0.56 +0.6 506,803 - MPMX19_04180 0.56 -1.6 506,803 - MPMX19_04180 0.56 -1.0 507,110 + MPMX19_04180 0.81 -1.4 507,111 - MPMX19_04180 0.81 -1.3 507,120 + MPMX19_04180 0.82 -1.0 507,120 + MPMX19_04180 0.82 +1.0 507,120 + MPMX19_04180 0.82 +1.5 507,120 + MPMX19_04180 0.82 -1.3 507,120 + MPMX19_04180 0.82 -0.4 507,120 + MPMX19_04180 0.82 -1.6 507,120 + MPMX19_04180 0.82 -0.8 507,120 + MPMX19_04180 0.82 -0.1 507,120 + MPMX19_04180 0.82 -2.6 507,121 - MPMX19_04180 0.82 +0.7 507,121 - MPMX19_04180 0.82 -0.6 507,121 - MPMX19_04180 0.82 +0.6 507,121 - MPMX19_04180 0.82 -1.5 507,121 - MPMX19_04180 0.82 +0.8 507,121 - MPMX19_04180 0.82 -0.3 507,121 - MPMX19_04180 0.82 +0.4 507,121 - MPMX19_04180 0.82 +0.4 507,121 - MPMX19_04180 0.82 -1.0 507,121 - MPMX19_04180 0.82 -0.2 507,121 - MPMX19_04180 0.82 +0.4 507,121 - MPMX19_04180 0.82 -1.6 507,121 - MPMX19_04180 0.82 -0.5 507,122 + MPMX19_04180 0.82 +1.6 507,122 + MPMX19_04180 0.82 -0.9 507,122 + MPMX19_04180 0.82 +1.0 507,122 + MPMX19_04180 0.82 -0.8 507,122 + MPMX19_04180 0.82 -0.8 507,122 + MPMX19_04180 0.82 -0.0 507,122 + MPMX19_04180 0.82 -1.0 507,122 + MPMX19_04180 0.82 +0.0 507,122 + MPMX19_04180 0.82 -1.1 507,122 + MPMX19_04180 0.82 -0.2 507,122 + MPMX19_04180 0.82 -0.6 507,122 + MPMX19_04180 0.82 -0.4 507,122 + MPMX19_04180 0.82 -0.1 507,122 + MPMX19_04180 0.82 +0.8 507,122 + MPMX19_04180 0.82 +0.8 507,122 + MPMX19_04180 0.82 -0.4 507,122 + MPMX19_04180 0.82 -0.9 507,122 + MPMX19_04180 0.82 -0.4 507,122 + MPMX19_04180 0.82 +0.2 507,122 + MPMX19_04180 0.82 -0.9 507,122 + MPMX19_04180 0.82 -1.6 507,122 + MPMX19_04180 0.82 +0.5 507,122 + MPMX19_04180 0.82 -1.6 507,122 + MPMX19_04180 0.82 -1.4 507,122 + MPMX19_04180 0.82 -2.3 507,122 + MPMX19_04180 0.82 -0.1 507,122 + MPMX19_04180 0.82 +0.2 507,122 + MPMX19_04180 0.82 -0.6 507,122 + MPMX19_04180 0.82 -0.5 507,122 + MPMX19_04180 0.82 +0.0 507,122 + MPMX19_04180 0.82 -0.8 507,122 + MPMX19_04180 0.82 +0.0 507,122 + MPMX19_04180 0.82 +1.9 507,122 + MPMX19_04180 0.82 -1.2 507,122 + MPMX19_04180 0.82 +0.0 507,122 + MPMX19_04180 0.82 -0.2 507,123 - MPMX19_04180 0.82 -0.4 507,123 - MPMX19_04180 0.82 +0.5 507,123 - MPMX19_04180 0.82 +0.5 507,123 - MPMX19_04180 0.82 -0.1 507,123 - MPMX19_04180 0.82 -2.6 507,123 - MPMX19_04180 0.82 -0.8 507,123 - MPMX19_04180 0.82 -0.5 507,123 - MPMX19_04180 0.82 -1.8 507,123 - MPMX19_04180 0.82 -0.5 507,123 - MPMX19_04180 0.82 -1.0 507,123 - MPMX19_04180 0.82 -1.6 507,123 - MPMX19_04180 0.82 -1.9 507,123 - MPMX19_04180 0.82 +1.2 507,123 - MPMX19_04180 0.82 -0.8 507,123 - MPMX19_04180 0.82 -1.2 507,123 - MPMX19_04180 0.82 -1.7 507,123 - MPMX19_04180 0.82 -0.1 507,123 - MPMX19_04180 0.82 -0.1 507,123 - MPMX19_04180 0.82 -0.3 507,123 - MPMX19_04180 0.82 -1.6 507,123 - MPMX19_04180 0.82 -1.0 507,123 - MPMX19_04180 0.82 +0.6 507,123 - MPMX19_04180 0.82 -2.3 507,123 - MPMX19_04180 0.82 -0.2 507,123 - MPMX19_04180 0.82 -0.4 507,123 - MPMX19_04180 0.82 -1.2 507,123 - MPMX19_04180 0.82 -2.6 507,123 - MPMX19_04180 0.82 -1.6 507,123 - MPMX19_04180 0.82 -0.8 507,123 - MPMX19_04180 0.82 -0.4 507,123 - MPMX19_04180 0.82 -1.0 507,123 - MPMX19_04180 0.82 -0.5 507,123 - MPMX19_04180 0.82 -0.2 507,123 - MPMX19_04180 0.82 +0.6 507,123 - MPMX19_04180 0.82 +0.3 507,123 - MPMX19_04180 0.82 -2.8 507,123 - MPMX19_04180 0.82 -1.6 507,123 - MPMX19_04180 0.82 -0.7 507,123 - MPMX19_04180 0.82 -0.8 507,123 - MPMX19_04180 0.82 +0.0 507,123 - MPMX19_04180 0.82 -1.2 507,123 - MPMX19_04180 0.82 -0.2 507,210 + MPMX19_04180 0.90 +0.4 507,210 + MPMX19_04180 0.90 +0.6 507,210 + MPMX19_04180 0.90 -0.2 507,210 + MPMX19_04180 0.90 +0.0 507,210 + MPMX19_04180 0.90 +1.0 507,210 + MPMX19_04180 0.90 +0.9 507,210 + MPMX19_04180 0.90 -0.1 507,210 + MPMX19_04180 0.90 +1.0 507,210 + MPMX19_04180 0.90 -1.1 507,210 + MPMX19_04180 0.90 +0.8 507,210 + MPMX19_04180 0.90 -2.2 507,211 - MPMX19_04180 0.90 +0.3 507,211 - MPMX19_04180 0.90 +0.9 507,211 - MPMX19_04180 0.90 -0.2 507,211 - MPMX19_04180 0.90 -0.4 507,211 - MPMX19_04180 0.90 +0.9 507,211 - MPMX19_04180 0.90 -1.3 507,211 - MPMX19_04180 0.90 +0.2 507,211 - MPMX19_04180 0.90 -0.9 507,211 - MPMX19_04180 0.90 -1.1 507,211 - MPMX19_04180 0.90 -0.1 507,334 + -0.5 507,334 + +0.9 507,334 + +0.1 507,334 + +1.3 507,334 + +0.6 507,335 - -1.8 507,560 + MPMX19_04181 0.21 -1.6 507,560 + MPMX19_04181 0.21 -1.5 507,560 + MPMX19_04181 0.21 -0.3 507,561 - MPMX19_04181 0.21 -0.6 507,561 - MPMX19_04181 0.21 -0.3 507,662 + MPMX19_04181 0.31 -0.8 507,662 + MPMX19_04181 0.31 -1.5 507,662 + MPMX19_04181 0.31 +0.2 507,662 + MPMX19_04181 0.31 -0.4 507,662 + MPMX19_04181 0.31 -0.6 507,662 + MPMX19_04181 0.31 -0.4 507,662 + MPMX19_04181 0.31 -0.3 507,663 - MPMX19_04181 0.31 -1.1 507,663 - MPMX19_04181 0.31 -0.1 507,663 - MPMX19_04181 0.31 +0.4 507,663 - MPMX19_04181 0.31 +0.4 507,663 - MPMX19_04181 0.31 -1.9 507,663 - MPMX19_04181 0.31 -1.0 507,663 - MPMX19_04181 0.31 +0.1 507,663 - MPMX19_04181 0.31 -1.2 507,663 - MPMX19_04181 0.31 -1.6 507,854 + MPMX19_04181 0.50 -0.6 507,854 + MPMX19_04181 0.50 +0.5 507,855 - MPMX19_04181 0.51 +0.9 507,855 - MPMX19_04181 0.51 +0.5 507,855 - MPMX19_04181 0.51 +0.5 507,855 - MPMX19_04181 0.51 +0.3 508,269 + +0.9 508,269 + -1.1 508,270 - +0.4 508,410 + -1.7 508,410 + +0.4 508,435 - +2.9 508,446 + -0.2 508,464 + +0.1 508,464 + -0.7 508,464 + +0.6 508,464 + -1.7 508,464 + +0.3 508,465 - -1.4 508,465 - -0.5 508,465 - -1.4 508,465 - -1.6 508,465 - -2.3 508,866 + MPMX19_04182 0.34 +0.4 508,866 + MPMX19_04182 0.34 +0.4 508,867 - MPMX19_04182 0.34 +0.8 508,867 - MPMX19_04182 0.34 +0.6 508,867 - MPMX19_04182 0.34 +0.2 508,881 + MPMX19_04182 0.35 +0.7 508,882 - MPMX19_04182 0.35 -0.7 508,882 - MPMX19_04182 0.35 -0.2 508,882 - MPMX19_04182 0.35 -0.2 508,882 - MPMX19_04182 0.35 -0.9 508,882 - MPMX19_04182 0.35 -1.0 508,882 - MPMX19_04182 0.35 -1.6 508,971 + MPMX19_04182 0.42 -0.8 508,971 + MPMX19_04182 0.42 -1.9 508,972 - MPMX19_04182 0.42 +0.2 508,972 - MPMX19_04182 0.42 +0.0 508,983 + MPMX19_04182 0.43 -1.0 508,983 + MPMX19_04182 0.43 +0.0 508,984 - MPMX19_04182 0.43 +0.9
Or see this region's nucleotide sequence