Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04110 and MPMX19_04111 are separated by 271 nucleotides MPMX19_04111 and MPMX19_04112 overlap by 4 nucleotides MPMX19_04112 and MPMX19_04113 overlap by 1 nucleotides MPMX19_04113 and MPMX19_04114 are separated by 48 nucleotides
MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042
_04110
MPMX19_04111: MPMX19_04111 - hypothetical protein, at 418,314 to 418,877
_04111
MPMX19_04112: MPMX19_04112 - hypothetical protein, at 418,874 to 420,349
_04112
MPMX19_04113: MPMX19_04113 - hypothetical protein, at 420,349 to 421,029
_04113
MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766
_04114
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 418.132 kb on + strand at 418.132 kb on + strand at 418.133 kb on - strand at 418.133 kb on - strand at 418.209 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.551 kb on + strand, within MPMX19_04111 at 418.551 kb on + strand, within MPMX19_04111 at 418.970 kb on + strand at 419.144 kb on + strand, within MPMX19_04112 at 419.261 kb on + strand, within MPMX19_04112 at 419.261 kb on + strand, within MPMX19_04112 at 419.262 kb on - strand, within MPMX19_04112 at 419.526 kb on - strand, within MPMX19_04112 at 419.579 kb on + strand, within MPMX19_04112 at 419.580 kb on - strand, within MPMX19_04112 at 420.068 kb on + strand, within MPMX19_04112 at 420.137 kb on + strand, within MPMX19_04112 at 420.168 kb on - strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 421.048 kb on + strand at 421.048 kb on + strand at 421.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 418,132 + -1.0 418,132 + -0.3 418,133 - +0.5 418,133 - -1.0 418,209 + -2.4 418,295 + -2.1 418,295 + -0.3 418,295 + -0.5 418,295 + -1.2 418,295 + +0.2 418,295 + -0.3 418,295 + +0.4 418,295 + -1.2 418,295 + -0.5 418,295 + -0.3 418,295 + -0.2 418,295 + -1.0 418,295 + -1.2 418,551 + MPMX19_04111 0.42 +0.3 418,551 + MPMX19_04111 0.42 -0.6 418,970 + -0.4 419,144 + MPMX19_04112 0.18 -3.8 419,261 + MPMX19_04112 0.26 -0.8 419,261 + MPMX19_04112 0.26 -2.2 419,262 - MPMX19_04112 0.26 -2.1 419,526 - MPMX19_04112 0.44 -0.4 419,579 + MPMX19_04112 0.48 -0.7 419,580 - MPMX19_04112 0.48 -1.5 420,068 + MPMX19_04112 0.81 -3.5 420,137 + MPMX19_04112 0.86 -3.2 420,168 - MPMX19_04112 0.88 -1.5 420,185 + MPMX19_04112 0.89 -3.0 420,185 + MPMX19_04112 0.89 -2.1 420,185 + MPMX19_04112 0.89 -4.1 421,048 + +0.0 421,048 + -1.1 421,227 + -0.3
Or see this region's nucleotide sequence