Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03801 and MPMX19_03802 are separated by 10 nucleotides MPMX19_03802 and MPMX19_03803 overlap by 4 nucleotides MPMX19_03803 and MPMX19_03804 overlap by 4 nucleotides MPMX19_03804 and MPMX19_03805 overlap by 1 nucleotides MPMX19_03805 and MPMX19_03806 are separated by 3 nucleotides
MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238
_03801
MPMX19_03802: MPMX19_03802 - hypothetical protein, at 37,249 to 37,623
_03802
MPMX19_03803: MPMX19_03803 - hypothetical protein, at 37,620 to 38,057
_03803
MPMX19_03804: MPMX19_03804 - hypothetical protein, at 38,054 to 38,587
_03804
MPMX19_03805: MPMX19_03805 - hypothetical protein, at 38,587 to 38,997
_03805
MPMX19_03806: MPMX19_03806 - hypothetical protein, at 39,001 to 39,180
_03806
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.825 kb on - strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.993 kb on + strand, within MPMX19_03801 at 36.993 kb on + strand, within MPMX19_03801 at 36.994 kb on - strand, within MPMX19_03801 at 36.994 kb on - strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.048 kb on - strand, within MPMX19_03801 at 37.048 kb on - strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.087 kb on - strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.137 kb on + strand, within MPMX19_03801 at 37.137 kb on + strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.164 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.771 kb on - strand, within MPMX19_03803 at 37.771 kb on - strand, within MPMX19_03803 at 37.857 kb on + strand, within MPMX19_03803 at 37.857 kb on + strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.900 kb on - strand, within MPMX19_03803 at 37.900 kb on - strand, within MPMX19_03803 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.266 kb on + strand, within MPMX19_03804 at 38.266 kb on + strand, within MPMX19_03804 at 38.327 kb on + strand, within MPMX19_03804 at 38.327 kb on + strand, within MPMX19_03804 at 38.328 kb on - strand, within MPMX19_03804 at 38.328 kb on - strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.912 kb on - strand, within MPMX19_03805 at 38.912 kb on - strand, within MPMX19_03805
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 36,681 + MPMX19_03801 0.40 -0.3 36,681 + MPMX19_03801 0.40 +0.5 36,681 + MPMX19_03801 0.40 -0.2 36,717 + MPMX19_03801 0.44 +2.2 36,717 + MPMX19_03801 0.44 -1.6 36,717 + MPMX19_03801 0.44 -1.0 36,717 + MPMX19_03801 0.44 +1.2 36,718 - MPMX19_03801 0.44 -1.8 36,718 - MPMX19_03801 0.44 +1.6 36,825 - MPMX19_03801 0.55 -0.7 36,912 + MPMX19_03801 0.65 -0.7 36,912 + MPMX19_03801 0.65 +1.3 36,912 + MPMX19_03801 0.65 -0.7 36,912 + MPMX19_03801 0.65 -0.3 36,912 + MPMX19_03801 0.65 -1.5 36,912 + MPMX19_03801 0.65 -1.2 36,912 + MPMX19_03801 0.65 -0.5 36,912 + MPMX19_03801 0.65 +0.0 36,913 - MPMX19_03801 0.65 -0.6 36,913 - MPMX19_03801 0.65 -1.0 36,913 - MPMX19_03801 0.65 -1.7 36,913 - MPMX19_03801 0.65 +0.6 36,913 - MPMX19_03801 0.65 +0.0 36,913 - MPMX19_03801 0.65 -2.1 36,913 - MPMX19_03801 0.65 +2.6 36,913 - MPMX19_03801 0.65 +0.1 36,993 + MPMX19_03801 0.73 +0.9 36,993 + MPMX19_03801 0.73 -0.4 36,994 - MPMX19_03801 0.74 +0.8 36,994 - MPMX19_03801 0.74 +1.6 37,021 + MPMX19_03801 0.76 -0.5 37,021 + MPMX19_03801 0.76 +0.3 37,021 + MPMX19_03801 0.76 -2.6 37,021 + MPMX19_03801 0.76 -0.4 37,021 + MPMX19_03801 0.76 -0.7 37,021 + MPMX19_03801 0.76 -0.8 37,021 + MPMX19_03801 0.76 -0.5 37,021 + MPMX19_03801 0.76 +0.9 37,022 - MPMX19_03801 0.77 -0.4 37,022 - MPMX19_03801 0.77 +0.2 37,022 - MPMX19_03801 0.77 -0.2 37,022 - MPMX19_03801 0.77 -0.6 37,047 + MPMX19_03801 0.79 -1.0 37,047 + MPMX19_03801 0.79 +0.6 37,047 + MPMX19_03801 0.79 +0.8 37,047 + MPMX19_03801 0.79 +0.0 37,047 + MPMX19_03801 0.79 -0.7 37,047 + MPMX19_03801 0.79 +0.4 37,048 - MPMX19_03801 0.79 -0.6 37,048 - MPMX19_03801 0.79 -0.4 37,086 + MPMX19_03801 0.83 -0.5 37,086 + MPMX19_03801 0.83 -0.1 37,086 + MPMX19_03801 0.83 +1.6 37,086 + MPMX19_03801 0.83 +0.5 37,086 + MPMX19_03801 0.83 -2.4 37,086 + MPMX19_03801 0.83 +0.3 37,087 - MPMX19_03801 0.84 +0.3 37,092 + MPMX19_03801 0.84 -0.4 37,092 + MPMX19_03801 0.84 +1.0 37,092 + MPMX19_03801 0.84 -1.0 37,093 - MPMX19_03801 0.84 -1.0 37,093 - MPMX19_03801 0.84 +1.1 37,093 - MPMX19_03801 0.84 -0.2 37,093 - MPMX19_03801 0.84 -1.6 37,093 - MPMX19_03801 0.84 -1.6 37,093 - MPMX19_03801 0.84 +0.4 37,098 + MPMX19_03801 0.85 +0.0 37,098 + MPMX19_03801 0.85 -0.4 37,098 + MPMX19_03801 0.85 -0.7 37,098 + MPMX19_03801 0.85 +0.6 37,098 + MPMX19_03801 0.85 -2.5 37,098 + MPMX19_03801 0.85 -1.4 37,098 + MPMX19_03801 0.85 -0.9 37,098 + MPMX19_03801 0.85 -1.1 37,098 + MPMX19_03801 0.85 -0.2 37,098 + MPMX19_03801 0.85 +0.4 37,098 + MPMX19_03801 0.85 -2.3 37,098 + MPMX19_03801 0.85 -0.6 37,099 - MPMX19_03801 0.85 +0.3 37,099 - MPMX19_03801 0.85 -0.6 37,099 - MPMX19_03801 0.85 +0.4 37,099 - MPMX19_03801 0.85 -0.6 37,099 - MPMX19_03801 0.85 -0.5 37,099 - MPMX19_03801 0.85 -0.4 37,099 - MPMX19_03801 0.85 -1.0 37,099 - MPMX19_03801 0.85 -1.6 37,134 + MPMX19_03801 0.89 -0.3 37,134 + MPMX19_03801 0.89 -0.7 37,134 + MPMX19_03801 0.89 -0.7 37,134 + MPMX19_03801 0.89 -1.8 37,134 + MPMX19_03801 0.89 -0.3 37,134 + MPMX19_03801 0.89 -0.7 37,134 + MPMX19_03801 0.89 -0.4 37,135 - MPMX19_03801 0.89 -1.2 37,135 - MPMX19_03801 0.89 -0.4 37,135 - MPMX19_03801 0.89 -0.7 37,135 - MPMX19_03801 0.89 -1.8 37,135 - MPMX19_03801 0.89 +0.3 37,135 - MPMX19_03801 0.89 -1.2 37,135 - MPMX19_03801 0.89 -0.3 37,135 - MPMX19_03801 0.89 +0.0 37,137 + MPMX19_03801 0.89 -0.5 37,137 + MPMX19_03801 0.89 +0.3 37,138 - MPMX19_03801 0.89 -1.0 37,138 - MPMX19_03801 0.89 +0.6 37,138 - MPMX19_03801 0.89 -0.9 37,138 - MPMX19_03801 0.89 +0.0 37,138 - MPMX19_03801 0.89 -0.3 37,138 - MPMX19_03801 0.89 -0.3 37,138 - MPMX19_03801 0.89 +0.3 37,138 - MPMX19_03801 0.89 -1.2 37,138 - MPMX19_03801 0.89 -3.5 37,164 + +0.9 37,236 + -0.2 37,236 + -0.1 37,236 + +0.1 37,236 + +0.4 37,236 + +0.9 37,236 + +0.5 37,237 - -2.2 37,237 - +0.9 37,237 - -2.7 37,237 - +0.2 37,237 - +0.5 37,237 - -0.1 37,237 - -1.6 37,626 + -1.7 37,626 + -1.2 37,626 + -0.1 37,626 + -0.3 37,627 - -0.7 37,627 - +0.8 37,627 - -0.4 37,627 - -0.1 37,627 - +0.8 37,627 - +0.5 37,627 - -1.6 37,627 - -0.8 37,627 - -1.6 37,627 - -0.8 37,771 - MPMX19_03803 0.34 -1.1 37,771 - MPMX19_03803 0.34 -0.8 37,857 + MPMX19_03803 0.54 +0.2 37,857 + MPMX19_03803 0.54 -0.3 37,858 - MPMX19_03803 0.54 -0.7 37,858 - MPMX19_03803 0.54 -0.2 37,858 - MPMX19_03803 0.54 -0.9 37,900 - MPMX19_03803 0.64 -2.1 37,900 - MPMX19_03803 0.64 -0.7 38,163 + MPMX19_03804 0.20 +1.2 38,163 + MPMX19_03804 0.20 +0.5 38,163 + MPMX19_03804 0.20 -1.0 38,163 + MPMX19_03804 0.20 -1.6 38,164 - MPMX19_03804 0.21 +0.2 38,164 - MPMX19_03804 0.21 -0.6 38,164 - MPMX19_03804 0.21 +0.0 38,164 - MPMX19_03804 0.21 +0.9 38,164 - MPMX19_03804 0.21 +0.7 38,164 - MPMX19_03804 0.21 -1.3 38,164 - MPMX19_03804 0.21 +0.0 38,164 - MPMX19_03804 0.21 -0.6 38,164 - MPMX19_03804 0.21 -0.3 38,164 - MPMX19_03804 0.21 -0.7 38,164 - MPMX19_03804 0.21 -1.3 38,266 + MPMX19_03804 0.40 -2.8 38,266 + MPMX19_03804 0.40 +0.3 38,327 + MPMX19_03804 0.51 -0.2 38,327 + MPMX19_03804 0.51 -0.4 38,328 - MPMX19_03804 0.51 -1.4 38,328 - MPMX19_03804 0.51 -1.0 38,429 + MPMX19_03804 0.70 -0.8 38,429 + MPMX19_03804 0.70 -1.0 38,429 + MPMX19_03804 0.70 +0.0 38,429 + MPMX19_03804 0.70 -0.7 38,429 + MPMX19_03804 0.70 -0.2 38,429 + MPMX19_03804 0.70 -0.2 38,429 + MPMX19_03804 0.70 -0.8 38,429 + MPMX19_03804 0.70 -1.7 38,429 + MPMX19_03804 0.70 +0.6 38,429 + MPMX19_03804 0.70 +0.0 38,429 + MPMX19_03804 0.70 -0.4 38,429 + MPMX19_03804 0.70 -0.6 38,429 + MPMX19_03804 0.70 +1.0 38,429 + MPMX19_03804 0.70 -0.6 38,429 + MPMX19_03804 0.70 +0.2 38,430 - MPMX19_03804 0.70 +0.3 38,430 - MPMX19_03804 0.70 -1.6 38,430 - MPMX19_03804 0.70 +0.8 38,430 - MPMX19_03804 0.70 -1.2 38,430 - MPMX19_03804 0.70 +0.1 38,430 - MPMX19_03804 0.70 -0.5 38,430 - MPMX19_03804 0.70 -1.7 38,430 - MPMX19_03804 0.70 -1.8 38,430 - MPMX19_03804 0.70 -0.6 38,430 - MPMX19_03804 0.70 -0.8 38,430 - MPMX19_03804 0.70 +0.0 38,430 - MPMX19_03804 0.70 -0.8 38,430 - MPMX19_03804 0.70 -0.4 38,430 - MPMX19_03804 0.70 +0.5 38,430 - MPMX19_03804 0.70 -0.5 38,430 - MPMX19_03804 0.70 +0.0 38,912 - MPMX19_03805 0.79 -1.4 38,912 - MPMX19_03805 0.79 -0.4
Or see this region's nucleotide sequence