Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03771 and MPMX19_03772 are separated by 167 nucleotides MPMX19_03772 and MPMX19_03773 overlap by 8 nucleotides
MPMX19_03771: MPMX19_03771 - hypothetical protein, at 15,639 to 15,959
_03771
MPMX19_03772: MPMX19_03772 - hypothetical protein, at 16,127 to 16,612
_03772
MPMX19_03773: MPMX19_03773 - hypothetical protein, at 16,605 to 18,788
_03773
Position (kb) 16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.623 kb on - strand at 15.649 kb on - strand at 15.762 kb on - strand, within MPMX19_03771 at 15.762 kb on - strand, within MPMX19_03771 at 15.871 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 16.333 kb on + strand, within MPMX19_03772 at 16.333 kb on + strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.136 kb on + strand, within MPMX19_03773 at 17.137 kb on - strand, within MPMX19_03773 at 17.254 kb on - strand, within MPMX19_03773 at 17.334 kb on + strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.469 kb on + strand, within MPMX19_03773 at 17.470 kb on - strand, within MPMX19_03773
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 15,472 - -0.1 15,472 - -0.6 15,472 - -1.2 15,472 - -1.6 15,472 - -1.1 15,472 - -0.3 15,472 - -0.9 15,478 - -0.4 15,478 - +0.7 15,478 - -1.5 15,478 - +0.8 15,623 - +0.3 15,649 - -1.0 15,762 - MPMX19_03771 0.38 -0.8 15,762 - MPMX19_03771 0.38 +1.3 15,871 - MPMX19_03771 0.72 -0.1 15,912 - MPMX19_03771 0.85 +1.0 15,912 - MPMX19_03771 0.85 -0.5 15,912 - MPMX19_03771 0.85 -1.3 15,912 - MPMX19_03771 0.85 -0.4 15,912 - MPMX19_03771 0.85 -1.0 15,912 - MPMX19_03771 0.85 -0.8 15,912 - MPMX19_03771 0.85 +0.1 15,912 - MPMX19_03771 0.85 -1.6 15,958 - +0.9 15,958 - -0.1 15,958 - -0.9 15,958 - +0.8 15,990 - -1.1 15,990 - -0.4 15,990 - +0.9 15,990 - -1.4 15,990 - +0.8 15,990 - -1.8 16,333 + MPMX19_03772 0.42 -1.8 16,333 + MPMX19_03772 0.42 -0.4 16,334 - MPMX19_03772 0.43 -0.4 16,334 - MPMX19_03772 0.43 -1.2 16,334 - MPMX19_03772 0.43 -0.1 16,334 - MPMX19_03772 0.43 -0.8 16,334 - MPMX19_03772 0.43 -1.3 16,334 - MPMX19_03772 0.43 -1.8 16,334 - MPMX19_03772 0.43 -0.8 16,458 - MPMX19_03772 0.68 -0.9 16,458 - MPMX19_03772 0.68 +0.4 16,458 - MPMX19_03772 0.68 -1.2 17,120 - MPMX19_03773 0.24 -0.9 17,120 - MPMX19_03773 0.24 +0.2 17,120 - MPMX19_03773 0.24 +0.9 17,120 - MPMX19_03773 0.24 +0.2 17,120 - MPMX19_03773 0.24 -0.6 17,136 + MPMX19_03773 0.24 -0.3 17,137 - MPMX19_03773 0.24 +0.0 17,254 - MPMX19_03773 0.30 -1.7 17,334 + MPMX19_03773 0.33 +1.6 17,335 - MPMX19_03773 0.33 -0.0 17,335 - MPMX19_03773 0.33 +0.1 17,335 - MPMX19_03773 0.33 -0.5 17,427 + MPMX19_03773 0.38 +0.7 17,427 + MPMX19_03773 0.38 -1.0 17,428 - MPMX19_03773 0.38 +1.2 17,428 - MPMX19_03773 0.38 +0.0 17,428 - MPMX19_03773 0.38 -2.2 17,428 - MPMX19_03773 0.38 -1.4 17,469 + MPMX19_03773 0.40 -0.4 17,470 - MPMX19_03773 0.40 +0.0
Or see this region's nucleotide sequence