Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03576 and MPMX19_03577 are separated by 63 nucleotides MPMX19_03577 and MPMX19_03578 are separated by 92 nucleotides
MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425
_03576
MPMX19_03577: MPMX19_03577 - Pyridoxine 4-dehydrogenase, at 998,489 to 999,379
_03577
MPMX19_03578: MPMX19_03578 - HTH-type transcriptional regulator PgrR, at 999,472 to 1,000,377
_03578
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.932 kb on - strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.965 kb on - strand, within MPMX19_03576 at 998.141 kb on + strand, within MPMX19_03576 at 998.141 kb on + strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.142 kb on - strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.222 kb on + strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.223 kb on - strand, within MPMX19_03576 at 998.354 kb on + strand at 998.355 kb on - strand at 998.423 kb on + strand at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.736 kb on + strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.737 kb on - strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.799 kb on + strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.800 kb on - strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.980 kb on + strand, within MPMX19_03577 at 998.981 kb on - strand, within MPMX19_03577 at 998.981 kb on - strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.177 kb on + strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.178 kb on - strand, within MPMX19_03577 at 999.391 kb on + strand at 999.392 kb on - strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.408 kb on + strand at 999.409 kb on - strand at 999.409 kb on - strand at 999.409 kb on - strand at 999.409 kb on - strand at 999.431 kb on + strand at 999.432 kb on - strand at 999.432 kb on - strand at 999.827 kb on - strand, within MPMX19_03578 at 999.907 kb on + strand, within MPMX19_03578 at 999.991 kb on + strand, within MPMX19_03578 at 999.991 kb on + strand, within MPMX19_03578 at 999.992 kb on - strand, within MPMX19_03578 at 999.992 kb on - strand, within MPMX19_03578 at 999.992 kb on - strand, within MPMX19_03578 at 1000.223 kb on + strand, within MPMX19_03578 at 1000.223 kb on + strand, within MPMX19_03578 at 1000.224 kb on - strand, within MPMX19_03578 at 1000.300 kb on + strand at 1000.300 kb on + strand at 1000.301 kb on - strand at 1000.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 997,925 + MPMX19_03576 0.58 +0.7 997,925 + MPMX19_03576 0.58 -1.3 997,925 + MPMX19_03576 0.58 -0.2 997,925 + MPMX19_03576 0.58 +0.4 997,925 + MPMX19_03576 0.58 -0.4 997,925 + MPMX19_03576 0.58 -0.3 997,925 + MPMX19_03576 0.58 -1.0 997,925 + MPMX19_03576 0.58 -0.9 997,925 + MPMX19_03576 0.58 -1.3 997,926 - MPMX19_03576 0.58 +0.5 997,926 - MPMX19_03576 0.58 -0.2 997,926 - MPMX19_03576 0.58 +0.6 997,926 - MPMX19_03576 0.58 -1.5 997,926 - MPMX19_03576 0.58 +0.8 997,926 - MPMX19_03576 0.58 +1.5 997,926 - MPMX19_03576 0.58 -0.1 997,926 - MPMX19_03576 0.58 -2.7 997,926 - MPMX19_03576 0.58 -0.4 997,931 + MPMX19_03576 0.59 -1.7 997,931 + MPMX19_03576 0.59 -0.1 997,932 - MPMX19_03576 0.59 -0.5 997,952 + MPMX19_03576 0.60 -0.3 997,952 + MPMX19_03576 0.60 +0.1 997,952 + MPMX19_03576 0.60 +0.1 997,952 + MPMX19_03576 0.60 -0.6 997,952 + MPMX19_03576 0.60 +0.9 997,953 - MPMX19_03576 0.60 +0.8 997,953 - MPMX19_03576 0.60 -0.9 997,953 - MPMX19_03576 0.60 -0.6 997,953 - MPMX19_03576 0.60 +0.5 997,953 - MPMX19_03576 0.60 +1.7 997,953 - MPMX19_03576 0.60 -0.2 997,953 - MPMX19_03576 0.60 -0.5 997,955 + MPMX19_03576 0.61 -1.3 997,955 + MPMX19_03576 0.61 +0.9 997,955 + MPMX19_03576 0.61 -1.0 997,955 + MPMX19_03576 0.61 +1.4 997,955 + MPMX19_03576 0.61 +1.8 997,955 + MPMX19_03576 0.61 -0.4 997,955 + MPMX19_03576 0.61 -1.1 997,955 + MPMX19_03576 0.61 -0.3 997,955 + MPMX19_03576 0.61 -0.5 997,955 + MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 +0.7 997,956 - MPMX19_03576 0.61 -1.1 997,956 - MPMX19_03576 0.61 +1.3 997,956 - MPMX19_03576 0.61 -0.9 997,956 - MPMX19_03576 0.61 -1.5 997,956 - MPMX19_03576 0.61 -2.3 997,956 - MPMX19_03576 0.61 +0.3 997,956 - MPMX19_03576 0.61 -0.3 997,956 - MPMX19_03576 0.61 +1.3 997,956 - MPMX19_03576 0.61 +0.5 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 -0.8 997,964 + MPMX19_03576 0.61 +0.3 997,964 + MPMX19_03576 0.61 +3.5 997,964 + MPMX19_03576 0.61 -0.1 997,965 - MPMX19_03576 0.61 +0.1 998,141 + MPMX19_03576 0.76 +0.5 998,141 + MPMX19_03576 0.76 -0.0 998,142 - MPMX19_03576 0.76 +1.3 998,142 - MPMX19_03576 0.76 -0.4 998,142 - MPMX19_03576 0.76 -0.4 998,142 - MPMX19_03576 0.76 +0.1 998,222 + MPMX19_03576 0.83 -0.5 998,222 + MPMX19_03576 0.83 +1.3 998,222 + MPMX19_03576 0.83 +0.4 998,222 + MPMX19_03576 0.83 -0.1 998,222 + MPMX19_03576 0.83 -0.1 998,222 + MPMX19_03576 0.83 +0.1 998,222 + MPMX19_03576 0.83 -0.5 998,223 - MPMX19_03576 0.83 +0.2 998,223 - MPMX19_03576 0.83 -1.8 998,223 - MPMX19_03576 0.83 +0.3 998,223 - MPMX19_03576 0.83 +0.3 998,223 - MPMX19_03576 0.83 +0.3 998,223 - MPMX19_03576 0.83 +0.2 998,223 - MPMX19_03576 0.83 -1.3 998,223 - MPMX19_03576 0.83 +0.4 998,223 - MPMX19_03576 0.83 -0.8 998,354 + -0.2 998,355 - -1.7 998,423 + -1.7 998,736 + MPMX19_03577 0.28 +0.3 998,736 + MPMX19_03577 0.28 +0.9 998,736 + MPMX19_03577 0.28 -0.1 998,736 + MPMX19_03577 0.28 +0.3 998,737 - MPMX19_03577 0.28 +1.2 998,737 - MPMX19_03577 0.28 -2.7 998,737 - MPMX19_03577 0.28 +0.8 998,737 - MPMX19_03577 0.28 -1.3 998,737 - MPMX19_03577 0.28 +1.7 998,737 - MPMX19_03577 0.28 +0.1 998,737 - MPMX19_03577 0.28 +0.4 998,737 - MPMX19_03577 0.28 +0.3 998,737 - MPMX19_03577 0.28 -0.8 998,737 - MPMX19_03577 0.28 -0.5 998,737 - MPMX19_03577 0.28 -0.3 998,737 - MPMX19_03577 0.28 +0.5 998,737 - MPMX19_03577 0.28 -0.2 998,799 + MPMX19_03577 0.35 -2.6 998,799 + MPMX19_03577 0.35 -0.7 998,799 + MPMX19_03577 0.35 -1.7 998,800 - MPMX19_03577 0.35 -0.5 998,800 - MPMX19_03577 0.35 -1.8 998,800 - MPMX19_03577 0.35 -1.7 998,980 + MPMX19_03577 0.55 -1.5 998,980 + MPMX19_03577 0.55 +0.1 998,980 + MPMX19_03577 0.55 -1.1 998,980 + MPMX19_03577 0.55 -2.2 998,980 + MPMX19_03577 0.55 -0.9 998,981 - MPMX19_03577 0.55 -1.8 998,981 - MPMX19_03577 0.55 -0.9 999,177 + MPMX19_03577 0.77 +0.1 999,177 + MPMX19_03577 0.77 -1.5 999,177 + MPMX19_03577 0.77 -1.1 999,178 - MPMX19_03577 0.77 -0.7 999,178 - MPMX19_03577 0.77 -0.8 999,178 - MPMX19_03577 0.77 -0.7 999,178 - MPMX19_03577 0.77 -0.1 999,178 - MPMX19_03577 0.77 -0.7 999,178 - MPMX19_03577 0.77 -0.7 999,178 - MPMX19_03577 0.77 -0.6 999,178 - MPMX19_03577 0.77 -0.2 999,391 + -0.4 999,392 - -0.1 999,408 + -0.2 999,408 + -0.2 999,408 + +0.2 999,408 + -0.9 999,408 + -1.3 999,408 + +0.0 999,409 - +0.1 999,409 - +0.3 999,409 - -0.6 999,409 - -2.4 999,431 + -0.3 999,432 - -1.7 999,432 - -0.1 999,827 - MPMX19_03578 0.39 +1.4 999,907 + MPMX19_03578 0.48 +1.0 999,991 + MPMX19_03578 0.57 -0.6 999,991 + MPMX19_03578 0.57 +0.2 999,992 - MPMX19_03578 0.57 +0.3 999,992 - MPMX19_03578 0.57 -0.7 999,992 - MPMX19_03578 0.57 +1.0 1,000,223 + MPMX19_03578 0.83 -0.9 1,000,223 + MPMX19_03578 0.83 -0.8 1,000,224 - MPMX19_03578 0.83 -0.6 1,000,300 + +2.4 1,000,300 + -0.9 1,000,301 - -0.4 1,000,303 + -0.3
Or see this region's nucleotide sequence