Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03518 and MPMX19_03519 are separated by 176 nucleotides MPMX19_03519 and MPMX19_03520 are separated by 155 nucleotides
MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020
_03518
MPMX19_03519: MPMX19_03519 - Hydrogenase maturation factor HybF, at 938,197 to 938,439
_03519
MPMX19_03520: MPMX19_03520 - Hydrogen peroxide-inducible genes activator, at 938,595 to 939,494
_03520
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.246 kb on + strand, within MPMX19_03518 at 937.246 kb on + strand, within MPMX19_03518 at 937.247 kb on - strand, within MPMX19_03518 at 937.320 kb on - strand, within MPMX19_03518 at 937.331 kb on + strand, within MPMX19_03518 at 937.331 kb on + strand, within MPMX19_03518 at 937.332 kb on - strand, within MPMX19_03518 at 937.332 kb on - strand, within MPMX19_03518 at 937.339 kb on + strand, within MPMX19_03518 at 937.339 kb on + strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.386 kb on - strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.949 kb on + strand at 938.013 kb on - strand at 938.013 kb on - strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.313 kb on - strand, within MPMX19_03519 at 938.443 kb on + strand at 938.443 kb on + strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.460 kb on - strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.084 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 937,246 + MPMX19_03518 0.64 -0.6 937,246 + MPMX19_03518 0.64 -0.3 937,247 - MPMX19_03518 0.64 +0.2 937,320 - MPMX19_03518 0.68 +0.7 937,331 + MPMX19_03518 0.68 -0.1 937,331 + MPMX19_03518 0.68 -0.8 937,332 - MPMX19_03518 0.68 +0.8 937,332 - MPMX19_03518 0.68 +1.1 937,339 + MPMX19_03518 0.69 +1.3 937,339 + MPMX19_03518 0.69 +0.0 937,340 - MPMX19_03518 0.69 +0.0 937,340 - MPMX19_03518 0.69 +1.1 937,340 - MPMX19_03518 0.69 -1.2 937,385 + MPMX19_03518 0.71 -0.1 937,385 + MPMX19_03518 0.71 -0.8 937,385 + MPMX19_03518 0.71 +1.9 937,386 - MPMX19_03518 0.71 +0.7 937,466 + MPMX19_03518 0.74 -0.1 937,466 + MPMX19_03518 0.74 -0.9 937,466 + MPMX19_03518 0.74 +1.0 937,466 + MPMX19_03518 0.74 -0.5 937,467 - MPMX19_03518 0.74 -0.8 937,467 - MPMX19_03518 0.74 +0.9 937,467 - MPMX19_03518 0.74 +0.1 937,467 - MPMX19_03518 0.74 -0.3 937,467 - MPMX19_03518 0.74 +0.2 937,467 - MPMX19_03518 0.74 -1.1 937,467 - MPMX19_03518 0.74 -1.1 937,467 - MPMX19_03518 0.74 +0.5 937,473 - MPMX19_03518 0.75 -0.8 937,473 - MPMX19_03518 0.75 -1.4 937,473 - MPMX19_03518 0.75 -0.1 937,601 + MPMX19_03518 0.81 -0.9 937,601 + MPMX19_03518 0.81 -1.5 937,601 + MPMX19_03518 0.81 -0.5 937,601 + MPMX19_03518 0.81 -1.5 937,602 - MPMX19_03518 0.81 +0.3 937,602 - MPMX19_03518 0.81 +0.2 937,602 - MPMX19_03518 0.81 -0.1 937,602 - MPMX19_03518 0.81 -0.1 937,664 + MPMX19_03518 0.84 -1.3 937,664 + MPMX19_03518 0.84 +0.6 937,664 + MPMX19_03518 0.84 +0.1 937,665 - MPMX19_03518 0.84 -1.0 937,665 - MPMX19_03518 0.84 -0.3 937,665 - MPMX19_03518 0.84 +1.5 937,665 - MPMX19_03518 0.84 -1.8 937,665 - MPMX19_03518 0.84 -1.0 937,665 - MPMX19_03518 0.84 -0.6 937,665 - MPMX19_03518 0.84 -0.1 937,796 + MPMX19_03518 0.90 -1.5 937,796 + MPMX19_03518 0.90 -0.1 937,796 + MPMX19_03518 0.90 -0.7 937,796 + MPMX19_03518 0.90 -1.2 937,796 + MPMX19_03518 0.90 -2.0 937,796 + MPMX19_03518 0.90 -0.3 937,796 + MPMX19_03518 0.90 -0.5 937,796 + MPMX19_03518 0.90 -0.7 937,796 + MPMX19_03518 0.90 +0.3 937,797 - MPMX19_03518 0.90 +0.0 937,797 - MPMX19_03518 0.90 +0.0 937,797 - MPMX19_03518 0.90 +0.8 937,797 - MPMX19_03518 0.90 +0.2 937,797 - MPMX19_03518 0.90 -0.8 937,797 - MPMX19_03518 0.90 +0.0 937,797 - MPMX19_03518 0.90 +0.5 937,797 - MPMX19_03518 0.90 -1.1 937,797 - MPMX19_03518 0.90 +0.1 937,797 - MPMX19_03518 0.90 -1.7 937,797 - MPMX19_03518 0.90 -0.3 937,797 - MPMX19_03518 0.90 -0.2 937,797 - MPMX19_03518 0.90 -0.0 937,797 - MPMX19_03518 0.90 -2.0 937,798 + MPMX19_03518 0.90 -0.1 937,798 + MPMX19_03518 0.90 -1.2 937,798 + MPMX19_03518 0.90 -0.1 937,798 + MPMX19_03518 0.90 -2.3 937,798 + MPMX19_03518 0.90 +2.2 937,798 + MPMX19_03518 0.90 -1.1 937,799 - MPMX19_03518 0.90 +1.7 937,799 - MPMX19_03518 0.90 -0.5 937,799 - MPMX19_03518 0.90 +0.1 937,799 - MPMX19_03518 0.90 -0.6 937,799 - MPMX19_03518 0.90 +0.2 937,799 - MPMX19_03518 0.90 +0.1 937,799 - MPMX19_03518 0.90 +0.2 937,805 + -2.2 937,805 + +0.5 937,805 + +0.2 937,805 + -0.4 937,806 - +0.0 937,806 - -0.5 937,806 - -0.9 937,806 - -0.6 937,806 - -1.7 937,806 - +0.8 937,878 - +0.4 937,878 - +0.8 937,883 + -2.7 937,883 + -0.2 937,883 + +1.2 937,884 - -1.2 937,884 - +0.4 937,884 - -0.7 937,884 - -1.2 937,884 - -0.2 937,884 - -0.1 937,884 - +0.1 937,934 + -2.6 937,934 + -2.5 937,934 + +1.8 937,934 + +0.1 937,934 + -1.1 937,935 - -0.9 937,935 - -1.4 937,935 - -1.5 937,935 - -1.5 937,935 - -0.5 937,935 - -1.7 937,949 + -2.2 938,013 - -1.9 938,013 - -0.4 938,065 + +0.3 938,065 + +1.4 938,065 + -2.6 938,065 + -0.6 938,065 + +0.4 938,065 + +0.3 938,065 + -0.5 938,065 + -0.3 938,065 + -0.1 938,065 + +1.1 938,065 + +0.9 938,065 + -0.3 938,123 - +0.4 938,123 - -0.8 938,123 - -1.2 938,313 - MPMX19_03519 0.48 +0.8 938,443 + -1.3 938,443 + -0.2 938,444 - -0.3 938,444 - -0.5 938,444 - +0.3 938,459 + +0.4 938,459 + -2.5 938,459 + -0.1 938,460 - +0.9 938,508 + -2.2 938,508 + -1.2 938,508 + +1.1 938,508 + -2.3 938,508 + -0.1 938,508 + -0.5 938,508 + -1.2 938,508 + -1.6 938,508 + -1.0 938,508 + -1.0 938,508 + -0.2 938,508 + +0.9 938,508 + -2.0 938,508 + -2.8 938,508 + +1.0 938,509 - -1.0 938,509 - +0.9 938,509 - -1.1 938,509 - +0.5 938,509 - +0.0 938,509 - -1.0 938,509 - -1.7 938,509 - +0.3 938,509 - -0.8 938,509 - -1.5 938,509 - +0.5 938,509 - +0.3 938,509 - -1.1 938,509 - -0.9 938,509 - -0.5 938,547 + -1.1 938,547 + +0.5 938,547 + -1.7 938,548 - -0.3 938,548 - -0.1 938,548 - -0.3 938,548 - -0.5 938,548 - +0.2 938,548 - -0.8 938,548 - -1.7 938,548 - -0.1 938,814 + MPMX19_03520 0.24 +0.1 938,814 + MPMX19_03520 0.24 -1.0 938,814 + MPMX19_03520 0.24 -1.1 938,814 + MPMX19_03520 0.24 +0.3 938,815 - MPMX19_03520 0.24 -1.0 938,815 - MPMX19_03520 0.24 -1.7 939,027 + MPMX19_03520 0.48 +0.6 939,027 + MPMX19_03520 0.48 -1.2 939,027 + MPMX19_03520 0.48 -0.1 939,027 + MPMX19_03520 0.48 -1.3 939,027 + MPMX19_03520 0.48 +1.0 939,027 + MPMX19_03520 0.48 +0.2 939,028 - MPMX19_03520 0.48 +0.2 939,028 - MPMX19_03520 0.48 -0.8 939,028 - MPMX19_03520 0.48 +0.5 939,028 - MPMX19_03520 0.48 +0.0 939,028 - MPMX19_03520 0.48 -0.3 939,028 - MPMX19_03520 0.48 +0.8 939,028 - MPMX19_03520 0.48 +0.4 939,073 - MPMX19_03520 0.53 +0.3 939,073 - MPMX19_03520 0.53 +0.9 939,084 + MPMX19_03520 0.54 -1.1 939,293 + MPMX19_03520 0.78 -1.9 939,293 + MPMX19_03520 0.78 -1.0
Or see this region's nucleotide sequence