Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03485

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03484 and MPMX19_03485 are separated by 253 nucleotidesMPMX19_03485 and MPMX19_03486 are separated by 30 nucleotides MPMX19_03484: MPMX19_03484 - hypothetical protein, at 895,882 to 896,853 _03484 MPMX19_03485: MPMX19_03485 - (S)-mandelate dehydrogenase, at 897,107 to 898,282 _03485 MPMX19_03486: MPMX19_03486 - Pca regulon regulatory protein, at 898,313 to 899,170 _03486 Position (kb) 897 898 899Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.250 kb on - strand, within MPMX19_03484at 896.250 kb on - strand, within MPMX19_03484at 896.321 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.534 kb on + strand, within MPMX19_03484at 896.534 kb on + strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.552 kb on + strand, within MPMX19_03484at 896.553 kb on - strand, within MPMX19_03484at 896.553 kb on - strand, within MPMX19_03484at 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 897.030 kb on - strandat 897.050 kb on + strandat 897.640 kb on - strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.775 kb on + strand, within MPMX19_03485at 897.777 kb on + strand, within MPMX19_03485at 897.778 kb on - strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.888 kb on + strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 897.889 kb on - strand, within MPMX19_03485at 898.014 kb on + strand, within MPMX19_03485at 898.014 kb on + strand, within MPMX19_03485at 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.200 kb on + strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.201 kb on - strandat 898.323 kb on + strandat 898.323 kb on + strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.522 kb on - strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.818 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.948 kb on - strand, within MPMX19_03486

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
896,240 + MPMX19_03484 0.37 +2.2
896,240 + MPMX19_03484 0.37 +0.3
896,240 + MPMX19_03484 0.37 +0.8
896,240 + MPMX19_03484 0.37 +0.7
896,240 + MPMX19_03484 0.37 -1.5
896,240 + MPMX19_03484 0.37 -1.5
896,240 + MPMX19_03484 0.37 -0.1
896,241 - MPMX19_03484 0.37 -1.1
896,241 - MPMX19_03484 0.37 -0.1
896,241 - MPMX19_03484 0.37 -0.3
896,249 + MPMX19_03484 0.38 -1.7
896,249 + MPMX19_03484 0.38 +0.9
896,249 + MPMX19_03484 0.38 -1.5
896,249 + MPMX19_03484 0.38 +0.5
896,249 + MPMX19_03484 0.38 -1.4
896,250 - MPMX19_03484 0.38 +0.8
896,250 - MPMX19_03484 0.38 -1.9
896,321 + MPMX19_03484 0.45 -1.0
896,330 + MPMX19_03484 0.46 -0.3
896,330 + MPMX19_03484 0.46 +0.5
896,330 + MPMX19_03484 0.46 +0.9
896,330 + MPMX19_03484 0.46 +1.0
896,331 - MPMX19_03484 0.46 -0.1
896,331 - MPMX19_03484 0.46 -0.6
896,331 - MPMX19_03484 0.46 -1.4
896,331 - MPMX19_03484 0.46 +0.7
896,372 + MPMX19_03484 0.50 -1.5
896,372 + MPMX19_03484 0.50 +1.0
896,372 + MPMX19_03484 0.50 -0.6
896,372 + MPMX19_03484 0.50 +0.7
896,372 + MPMX19_03484 0.50 -1.7
896,372 + MPMX19_03484 0.50 -0.5
896,372 + MPMX19_03484 0.50 +0.7
896,372 + MPMX19_03484 0.50 -0.4
896,372 + MPMX19_03484 0.50 +0.1
896,372 + MPMX19_03484 0.50 -0.7
896,373 - MPMX19_03484 0.51 -1.0
896,373 - MPMX19_03484 0.51 -0.1
896,373 - MPMX19_03484 0.51 +0.3
896,373 - MPMX19_03484 0.51 +0.6
896,373 - MPMX19_03484 0.51 +0.5
896,373 - MPMX19_03484 0.51 +0.8
896,373 - MPMX19_03484 0.51 -1.2
896,373 - MPMX19_03484 0.51 -1.2
896,373 - MPMX19_03484 0.51 +1.1
896,373 - MPMX19_03484 0.51 -0.5
896,373 - MPMX19_03484 0.51 -0.0
896,373 - MPMX19_03484 0.51 +0.6
896,474 + MPMX19_03484 0.61 -0.5
896,474 + MPMX19_03484 0.61 -1.7
896,474 + MPMX19_03484 0.61 -1.3
896,474 + MPMX19_03484 0.61 -0.3
896,474 + MPMX19_03484 0.61 -1.0
896,474 + MPMX19_03484 0.61 -1.3
896,474 + MPMX19_03484 0.61 +1.8
896,474 + MPMX19_03484 0.61 +0.4
896,474 + MPMX19_03484 0.61 -0.5
896,474 + MPMX19_03484 0.61 +0.2
896,474 + MPMX19_03484 0.61 -2.1
896,474 + MPMX19_03484 0.61 -0.4
896,475 - MPMX19_03484 0.61 +0.3
896,475 - MPMX19_03484 0.61 +1.5
896,475 - MPMX19_03484 0.61 +0.3
896,475 - MPMX19_03484 0.61 -0.1
896,475 - MPMX19_03484 0.61 -1.1
896,475 - MPMX19_03484 0.61 -2.3
896,475 - MPMX19_03484 0.61 +0.2
896,475 - MPMX19_03484 0.61 -1.0
896,475 - MPMX19_03484 0.61 +0.1
896,475 - MPMX19_03484 0.61 +0.9
896,475 - MPMX19_03484 0.61 +0.9
896,534 + MPMX19_03484 0.67 +0.4
896,534 + MPMX19_03484 0.67 +1.3
896,535 - MPMX19_03484 0.67 -0.1
896,535 - MPMX19_03484 0.67 -0.8
896,535 - MPMX19_03484 0.67 +1.0
896,535 - MPMX19_03484 0.67 +0.5
896,535 - MPMX19_03484 0.67 -0.5
896,552 + MPMX19_03484 0.69 -2.0
896,553 - MPMX19_03484 0.69 +0.7
896,553 - MPMX19_03484 0.69 +0.5
896,849 + -0.6
896,849 + +0.0
896,849 + -0.5
896,849 + -1.3
896,849 + -0.6
896,849 + -0.2
896,849 + -0.5
896,849 + +0.4
896,849 + +0.8
896,849 + -0.5
896,850 - -0.6
896,850 - -0.0
896,850 - -0.1
896,850 - -2.6
896,850 - -0.7
896,850 - +0.3
897,030 - +0.5
897,050 + -0.3
897,640 - MPMX19_03485 0.45 -0.8
897,648 + MPMX19_03485 0.46 -0.9
897,648 + MPMX19_03485 0.46 +1.5
897,775 + MPMX19_03485 0.57 -0.6
897,777 + MPMX19_03485 0.57 -0.3
897,778 - MPMX19_03485 0.57 -0.7
897,888 + MPMX19_03485 0.66 +0.1
897,888 + MPMX19_03485 0.66 -0.9
897,888 + MPMX19_03485 0.66 +0.1
897,888 + MPMX19_03485 0.66 +0.2
897,888 + MPMX19_03485 0.66 -1.5
897,888 + MPMX19_03485 0.66 -2.0
897,888 + MPMX19_03485 0.66 -1.5
897,889 - MPMX19_03485 0.66 -0.5
897,889 - MPMX19_03485 0.66 -0.6
897,889 - MPMX19_03485 0.66 -0.7
897,889 - MPMX19_03485 0.66 -0.7
897,889 - MPMX19_03485 0.66 +1.2
897,889 - MPMX19_03485 0.66 -2.9
897,889 - MPMX19_03485 0.66 +0.0
897,889 - MPMX19_03485 0.66 +0.6
897,889 - MPMX19_03485 0.66 -1.7
897,889 - MPMX19_03485 0.66 -1.8
897,889 - MPMX19_03485 0.66 -0.4
898,014 + MPMX19_03485 0.77 -0.5
898,014 + MPMX19_03485 0.77 -0.4
898,200 + -1.1
898,200 + +0.9
898,200 + -1.0
898,200 + +0.2
898,200 + -2.2
898,201 - -0.5
898,201 - -0.6
898,201 - +0.5
898,201 - -0.4
898,201 - -0.1
898,201 - -0.6
898,201 - +0.5
898,201 - +0.9
898,323 + -1.2
898,323 + -0.4
898,324 - -0.2
898,324 - +0.3
898,324 - -1.8
898,324 - -0.2
898,521 + MPMX19_03486 0.24 -0.9
898,521 + MPMX19_03486 0.24 +1.0
898,521 + MPMX19_03486 0.24 -1.5
898,521 + MPMX19_03486 0.24 -0.6
898,522 - MPMX19_03486 0.24 -1.3
898,674 + MPMX19_03486 0.42 -0.8
898,674 + MPMX19_03486 0.42 +1.1
898,674 + MPMX19_03486 0.42 -0.7
898,674 + MPMX19_03486 0.42 -1.0
898,675 - MPMX19_03486 0.42 -0.6
898,675 - MPMX19_03486 0.42 +0.7
898,675 - MPMX19_03486 0.42 +0.1
898,675 - MPMX19_03486 0.42 -0.5
898,675 - MPMX19_03486 0.42 +0.2
898,677 + MPMX19_03486 0.42 -0.5
898,677 + MPMX19_03486 0.42 -2.3
898,678 - MPMX19_03486 0.43 -0.5
898,678 - MPMX19_03486 0.43 -1.3
898,678 - MPMX19_03486 0.43 -1.3
898,746 + MPMX19_03486 0.50 -2.0
898,746 + MPMX19_03486 0.50 -0.3
898,746 + MPMX19_03486 0.50 -0.4
898,746 + MPMX19_03486 0.50 -0.1
898,746 + MPMX19_03486 0.50 -0.5
898,746 + MPMX19_03486 0.50 +0.5
898,747 - MPMX19_03486 0.51 +0.2
898,747 - MPMX19_03486 0.51 -0.2
898,818 + MPMX19_03486 0.59 -1.3
898,857 + MPMX19_03486 0.63 -1.0
898,857 + MPMX19_03486 0.63 -0.4
898,857 + MPMX19_03486 0.63 +0.5
898,857 + MPMX19_03486 0.63 -1.6
898,857 + MPMX19_03486 0.63 +0.8
898,857 + MPMX19_03486 0.63 -1.0
898,857 + MPMX19_03486 0.63 -1.1
898,858 - MPMX19_03486 0.64 -1.2
898,858 - MPMX19_03486 0.64 +0.3
898,858 - MPMX19_03486 0.64 +1.1
898,858 - MPMX19_03486 0.64 +0.4
898,858 - MPMX19_03486 0.64 -0.1
898,858 - MPMX19_03486 0.64 +0.4
898,858 - MPMX19_03486 0.64 -1.8
898,858 - MPMX19_03486 0.64 -1.0
898,863 + MPMX19_03486 0.64 +0.5
898,863 + MPMX19_03486 0.64 -2.2
898,864 - MPMX19_03486 0.64 -0.6
898,864 - MPMX19_03486 0.64 -1.0
898,896 + MPMX19_03486 0.68 +0.1
898,896 + MPMX19_03486 0.68 -1.7
898,897 - MPMX19_03486 0.68 -0.3
898,897 - MPMX19_03486 0.68 -0.1
898,897 - MPMX19_03486 0.68 -1.2
898,926 + MPMX19_03486 0.71 +0.1
898,926 + MPMX19_03486 0.71 +1.2
898,947 + MPMX19_03486 0.74 -0.1
898,947 + MPMX19_03486 0.74 +1.1
898,948 - MPMX19_03486 0.74 -0.5

Or see this region's nucleotide sequence