Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03422 and MPMX19_03423 are separated by 46 nucleotides MPMX19_03423 and MPMX19_03424 are separated by 206 nucleotides MPMX19_03424 and MPMX19_03425 are separated by 16 nucleotides MPMX19_03425 and MPMX19_03426 are separated by 12 nucleotides
MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190
_03422
MPMX19_03423: MPMX19_03423 - hypothetical protein, at 815,237 to 815,779
_03423
MPMX19_03424: MPMX19_03424 - hypothetical protein, at 815,986 to 816,651
_03424
MPMX19_03425: MPMX19_03425 - hypothetical protein, at 816,668 to 816,979
_03425
MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419
_03426
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 815.090 kb on + strand at 815.185 kb on - strand at 815.217 kb on + strand at 815.718 kb on + strand, within MPMX19_03423 at 815.718 kb on + strand, within MPMX19_03423 at 815.718 kb on + strand, within MPMX19_03423 at 815.718 kb on + strand, within MPMX19_03423 at 815.718 kb on + strand, within MPMX19_03423 at 815.718 kb on + strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.719 kb on - strand, within MPMX19_03423 at 815.860 kb on + strand at 815.873 kb on + strand at 815.873 kb on + strand at 815.873 kb on + strand at 815.874 kb on - strand at 815.902 kb on - strand at 815.921 kb on + strand at 815.921 kb on + strand at 815.921 kb on + strand at 815.921 kb on + strand at 815.921 kb on + strand at 815.921 kb on + strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.922 kb on - strand at 815.924 kb on + strand at 815.987 kb on + strand at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.447 kb on - strand, within MPMX19_03424 at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.663 kb on - strand at 816.663 kb on - strand at 816.663 kb on - strand at 816.834 kb on + strand, within MPMX19_03425 at 816.835 kb on - strand, within MPMX19_03425 at 816.835 kb on - strand, within MPMX19_03425 at 817.033 kb on - strand at 817.033 kb on - strand at 817.033 kb on - strand at 817.033 kb on - strand at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.141 kb on - strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.496 kb on + strand, within MPMX19_03426 at 817.525 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.593 kb on + strand, within MPMX19_03426 at 817.593 kb on + strand, within MPMX19_03426 at 817.594 kb on - strand, within MPMX19_03426 at 817.594 kb on - strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 815,090 + +0.7 815,185 - +1.5 815,217 + -0.3 815,718 + MPMX19_03423 0.89 -0.1 815,718 + MPMX19_03423 0.89 -1.1 815,718 + MPMX19_03423 0.89 -0.1 815,718 + MPMX19_03423 0.89 -1.0 815,718 + MPMX19_03423 0.89 +0.1 815,718 + MPMX19_03423 0.89 -1.5 815,719 - MPMX19_03423 0.89 +0.4 815,719 - MPMX19_03423 0.89 -0.8 815,719 - MPMX19_03423 0.89 -0.7 815,719 - MPMX19_03423 0.89 +0.0 815,719 - MPMX19_03423 0.89 -1.1 815,719 - MPMX19_03423 0.89 -0.3 815,860 + -2.1 815,873 + +0.9 815,873 + -0.1 815,873 + -0.5 815,874 - -2.1 815,902 - -0.0 815,921 + +0.0 815,921 + -0.5 815,921 + -0.6 815,921 + -0.8 815,921 + +0.5 815,921 + -0.5 815,922 - -0.0 815,922 - +0.8 815,922 - +0.3 815,922 - -1.6 815,922 - +0.4 815,922 - -0.3 815,922 - -2.2 815,924 + -0.8 815,987 + -1.3 816,077 + MPMX19_03424 0.14 -2.7 816,077 + MPMX19_03424 0.14 -1.8 816,077 + MPMX19_03424 0.14 +0.3 816,077 + MPMX19_03424 0.14 -0.2 816,077 + MPMX19_03424 0.14 +0.6 816,077 + MPMX19_03424 0.14 -0.5 816,077 + MPMX19_03424 0.14 -0.5 816,077 + MPMX19_03424 0.14 -1.8 816,077 + MPMX19_03424 0.14 -0.1 816,077 + MPMX19_03424 0.14 +0.2 816,077 + MPMX19_03424 0.14 -1.0 816,077 + MPMX19_03424 0.14 -0.4 816,077 + MPMX19_03424 0.14 -1.5 816,077 + MPMX19_03424 0.14 -1.4 816,078 - MPMX19_03424 0.14 -1.0 816,078 - MPMX19_03424 0.14 -0.3 816,078 - MPMX19_03424 0.14 -0.5 816,078 - MPMX19_03424 0.14 +0.1 816,078 - MPMX19_03424 0.14 +0.5 816,078 - MPMX19_03424 0.14 -1.1 816,078 - MPMX19_03424 0.14 -0.9 816,078 - MPMX19_03424 0.14 -1.1 816,078 - MPMX19_03424 0.14 -0.5 816,078 - MPMX19_03424 0.14 -0.4 816,078 - MPMX19_03424 0.14 -0.7 816,078 - MPMX19_03424 0.14 +0.4 816,078 - MPMX19_03424 0.14 -1.5 816,078 - MPMX19_03424 0.14 -0.7 816,155 + MPMX19_03424 0.25 +1.5 816,155 + MPMX19_03424 0.25 -1.0 816,155 + MPMX19_03424 0.25 -0.8 816,155 + MPMX19_03424 0.25 -0.5 816,155 + MPMX19_03424 0.25 +0.2 816,155 + MPMX19_03424 0.25 +0.3 816,155 + MPMX19_03424 0.25 -0.6 816,155 + MPMX19_03424 0.25 -0.8 816,155 + MPMX19_03424 0.25 +0.2 816,155 + MPMX19_03424 0.25 +1.3 816,155 + MPMX19_03424 0.25 -0.6 816,156 - MPMX19_03424 0.26 -0.9 816,156 - MPMX19_03424 0.26 +0.2 816,156 - MPMX19_03424 0.26 -0.8 816,156 - MPMX19_03424 0.26 +0.9 816,156 - MPMX19_03424 0.26 -0.6 816,156 - MPMX19_03424 0.26 -1.0 816,156 - MPMX19_03424 0.26 -0.3 816,156 - MPMX19_03424 0.26 +0.2 816,447 - MPMX19_03424 0.69 -0.5 816,662 + +0.9 816,662 + -0.7 816,662 + +0.4 816,662 + -1.2 816,662 + +0.6 816,663 - +0.0 816,663 - -2.9 816,663 - -1.2 816,834 + MPMX19_03425 0.53 -0.8 816,835 - MPMX19_03425 0.54 -2.1 816,835 - MPMX19_03425 0.54 +0.2 817,033 - +0.3 817,033 - +0.8 817,033 - -0.2 817,033 - -0.8 817,140 + MPMX19_03426 0.10 +0.6 817,140 + MPMX19_03426 0.10 -0.8 817,140 + MPMX19_03426 0.10 +0.7 817,140 + MPMX19_03426 0.10 +0.8 817,141 - MPMX19_03426 0.10 -1.1 817,263 + MPMX19_03426 0.19 -0.3 817,263 + MPMX19_03426 0.19 -2.0 817,263 + MPMX19_03426 0.19 -0.1 817,263 + MPMX19_03426 0.19 -0.1 817,263 + MPMX19_03426 0.19 +0.4 817,264 - MPMX19_03426 0.19 -0.8 817,264 - MPMX19_03426 0.19 +0.4 817,264 - MPMX19_03426 0.19 -0.2 817,271 + MPMX19_03426 0.20 +1.1 817,271 + MPMX19_03426 0.20 -1.7 817,271 + MPMX19_03426 0.20 -1.2 817,271 + MPMX19_03426 0.20 +2.2 817,271 + MPMX19_03426 0.20 -0.1 817,271 + MPMX19_03426 0.20 -1.8 817,271 + MPMX19_03426 0.20 -0.2 817,271 + MPMX19_03426 0.20 +0.1 817,272 - MPMX19_03426 0.20 +0.2 817,272 - MPMX19_03426 0.20 -1.5 817,272 - MPMX19_03426 0.20 -0.9 817,272 - MPMX19_03426 0.20 -1.0 817,353 + MPMX19_03426 0.25 -0.4 817,353 + MPMX19_03426 0.25 +0.2 817,353 + MPMX19_03426 0.25 -0.3 817,353 + MPMX19_03426 0.25 -0.9 817,354 - MPMX19_03426 0.25 -1.3 817,354 - MPMX19_03426 0.25 -0.5 817,354 - MPMX19_03426 0.25 -0.4 817,354 - MPMX19_03426 0.25 -0.2 817,496 + MPMX19_03426 0.35 +0.2 817,525 + MPMX19_03426 0.37 +0.7 817,551 + MPMX19_03426 0.39 -0.5 817,551 + MPMX19_03426 0.39 +0.2 817,551 + MPMX19_03426 0.39 -1.1 817,551 + MPMX19_03426 0.39 -1.0 817,552 - MPMX19_03426 0.39 -0.3 817,552 - MPMX19_03426 0.39 -1.1 817,552 - MPMX19_03426 0.39 +2.6 817,552 - MPMX19_03426 0.39 +1.1 817,552 - MPMX19_03426 0.39 -0.3 817,593 + MPMX19_03426 0.42 -0.8 817,593 + MPMX19_03426 0.42 -2.3 817,594 - MPMX19_03426 0.42 +0.1 817,594 - MPMX19_03426 0.42 -0.1 817,617 + MPMX19_03426 0.44 +0.9 817,617 + MPMX19_03426 0.44 -0.4 817,617 + MPMX19_03426 0.44 +0.2 817,617 + MPMX19_03426 0.44 -0.5 817,617 + MPMX19_03426 0.44 +0.6 817,617 + MPMX19_03426 0.44 -0.4 817,617 + MPMX19_03426 0.44 -0.5 817,618 - MPMX19_03426 0.44 -0.3 817,618 - MPMX19_03426 0.44 -1.5 817,618 - MPMX19_03426 0.44 -1.1 817,618 - MPMX19_03426 0.44 -0.3 817,618 - MPMX19_03426 0.44 -1.0 817,618 - MPMX19_03426 0.44 -0.1 817,618 - MPMX19_03426 0.44 -0.8 817,618 - MPMX19_03426 0.44 -1.1 817,618 - MPMX19_03426 0.44 -0.8 817,618 - MPMX19_03426 0.44 -1.7 817,618 - MPMX19_03426 0.44 -0.1 817,618 - MPMX19_03426 0.44 -0.3 817,618 - MPMX19_03426 0.44 -0.1
Or see this region's nucleotide sequence