Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03375 and MPMX19_03376 are separated by 136 nucleotides MPMX19_03376 and MPMX19_03377 are separated by 148 nucleotides
MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560
_03375
MPMX19_03376: MPMX19_03376 - hypothetical protein, at 754,697 to 760,675
_03376
MPMX19_03377: MPMX19_03377 - D-allose transport system permease protein AlsC, at 760,824 to 761,873
_03377
Position (kb) 754
755
756
757
758
759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 753.713 kb on + strand, within MPMX19_03375 at 753.713 kb on + strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.732 kb on - strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 754.018 kb on - strand, within MPMX19_03375 at 754.028 kb on + strand, within MPMX19_03375 at 754.133 kb on + strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.365 kb on - strand, within MPMX19_03375 at 754.554 kb on + strand at 754.554 kb on + strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.620 kb on - strand at 754.620 kb on - strand at 754.633 kb on + strand at 754.633 kb on + strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.643 kb on + strand at 754.669 kb on - strand at 754.671 kb on + strand at 754.671 kb on + strand at 754.698 kb on + strand at 754.712 kb on - strand at 754.729 kb on + strand at 754.729 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.818 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 755.092 kb on + strand at 755.613 kb on + strand, within MPMX19_03376 at 755.614 kb on - strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.067 kb on - strand, within MPMX19_03376 at 756.067 kb on - strand, within MPMX19_03376 at 756.171 kb on + strand, within MPMX19_03376 at 756.171 kb on + strand, within MPMX19_03376 at 756.474 kb on + strand, within MPMX19_03376 at 756.474 kb on + strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.488 kb on - strand, within MPMX19_03376 at 756.488 kb on - strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 757.011 kb on + strand, within MPMX19_03376 at 757.011 kb on + strand, within MPMX19_03376 at 757.012 kb on - strand, within MPMX19_03376 at 757.415 kb on + strand, within MPMX19_03376 at 757.415 kb on + strand, within MPMX19_03376 at 757.476 kb on + strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.655 kb on - strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.422 kb on - strand, within MPMX19_03376 at 758.422 kb on - strand, within MPMX19_03376 at 759.065 kb on - strand, within MPMX19_03376 at 760.720 kb on + strand at 760.720 kb on + strand at 760.721 kb on - strand at 760.747 kb on + strand at 760.772 kb on - strand at 760.788 kb on + strand at 760.909 kb on + strand at 760.909 kb on + strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.663 kb on - strand, within MPMX19_03377
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 753,713 + MPMX19_03375 0.40 +0.2 753,713 + MPMX19_03375 0.40 +0.8 753,714 - MPMX19_03375 0.41 -2.3 753,714 - MPMX19_03375 0.41 -0.2 753,714 - MPMX19_03375 0.41 -2.0 753,714 - MPMX19_03375 0.41 +0.7 753,732 - MPMX19_03375 0.42 -0.1 753,917 + MPMX19_03375 0.55 +1.0 753,917 + MPMX19_03375 0.55 -0.3 753,917 + MPMX19_03375 0.55 -0.6 753,917 + MPMX19_03375 0.55 -0.6 753,918 - MPMX19_03375 0.55 -0.4 753,918 - MPMX19_03375 0.55 +0.5 753,918 - MPMX19_03375 0.55 +0.6 754,018 - MPMX19_03375 0.62 +0.2 754,028 + MPMX19_03375 0.63 +0.2 754,133 + MPMX19_03375 0.70 +0.0 754,134 - MPMX19_03375 0.70 +1.1 754,134 - MPMX19_03375 0.70 -1.0 754,365 - MPMX19_03375 0.86 +0.8 754,554 + +0.2 754,554 + -1.0 754,555 - +0.7 754,555 - +0.5 754,555 - -0.5 754,555 - +0.5 754,555 - -0.2 754,555 - -1.1 754,595 - -0.2 754,595 - +0.5 754,595 - +1.0 754,620 - -0.1 754,620 - +0.5 754,633 + +0.5 754,633 + -0.5 754,634 - +2.2 754,634 - +0.2 754,634 - -0.6 754,635 + +0.5 754,635 + +0.0 754,635 + -1.2 754,636 - +0.1 754,636 - -1.1 754,636 - +0.3 754,636 - -0.1 754,643 + +0.4 754,669 - +0.3 754,671 + +1.3 754,671 + +0.2 754,698 + -0.1 754,712 - -0.8 754,729 + +1.8 754,729 + -0.6 754,817 + +0.2 754,817 + -0.1 754,817 + -1.7 754,817 + -0.6 754,817 + -0.1 754,818 - -1.1 754,820 - -1.3 754,820 - -1.2 754,820 - +0.9 754,820 - -0.2 754,820 - -0.9 755,092 + +1.8 755,613 + MPMX19_03376 0.15 -2.0 755,614 - MPMX19_03376 0.15 -1.0 755,856 + MPMX19_03376 0.19 -0.2 755,856 + MPMX19_03376 0.19 -1.5 755,856 + MPMX19_03376 0.19 -1.3 755,856 + MPMX19_03376 0.19 -0.3 755,856 + MPMX19_03376 0.19 +0.8 755,856 + MPMX19_03376 0.19 +0.4 755,856 + MPMX19_03376 0.19 +0.5 755,856 + MPMX19_03376 0.19 +0.9 755,856 + MPMX19_03376 0.19 -0.5 755,856 + MPMX19_03376 0.19 -1.9 755,856 + MPMX19_03376 0.19 -0.1 755,857 - MPMX19_03376 0.19 +0.2 755,857 - MPMX19_03376 0.19 -1.7 755,857 - MPMX19_03376 0.19 +0.3 756,066 + MPMX19_03376 0.23 +0.6 756,066 + MPMX19_03376 0.23 +1.5 756,066 + MPMX19_03376 0.23 +0.0 756,067 - MPMX19_03376 0.23 -1.7 756,067 - MPMX19_03376 0.23 -0.5 756,171 + MPMX19_03376 0.25 -0.8 756,171 + MPMX19_03376 0.25 -1.2 756,474 + MPMX19_03376 0.30 -0.8 756,474 + MPMX19_03376 0.30 +1.1 756,475 - MPMX19_03376 0.30 -0.1 756,475 - MPMX19_03376 0.30 +0.0 756,475 - MPMX19_03376 0.30 +0.7 756,475 - MPMX19_03376 0.30 -0.3 756,475 - MPMX19_03376 0.30 +0.5 756,488 - MPMX19_03376 0.30 +1.2 756,488 - MPMX19_03376 0.30 -0.2 756,489 + MPMX19_03376 0.30 -0.6 756,489 + MPMX19_03376 0.30 +0.0 756,489 + MPMX19_03376 0.30 +1.7 756,489 + MPMX19_03376 0.30 -0.5 756,489 + MPMX19_03376 0.30 +1.2 756,489 + MPMX19_03376 0.30 +0.1 756,489 + MPMX19_03376 0.30 -0.2 756,489 + MPMX19_03376 0.30 +0.7 756,489 + MPMX19_03376 0.30 -1.4 756,489 + MPMX19_03376 0.30 -1.8 756,490 - MPMX19_03376 0.30 +0.5 756,490 - MPMX19_03376 0.30 +1.0 756,490 - MPMX19_03376 0.30 +0.2 756,490 - MPMX19_03376 0.30 -0.3 756,490 - MPMX19_03376 0.30 -0.3 756,490 - MPMX19_03376 0.30 +0.1 756,490 - MPMX19_03376 0.30 -0.5 756,490 - MPMX19_03376 0.30 -1.0 756,798 + MPMX19_03376 0.35 -0.6 756,798 + MPMX19_03376 0.35 +0.2 756,798 + MPMX19_03376 0.35 -0.3 756,798 + MPMX19_03376 0.35 +0.3 756,798 + MPMX19_03376 0.35 +0.9 756,798 + MPMX19_03376 0.35 -2.3 756,798 + MPMX19_03376 0.35 +0.0 756,798 + MPMX19_03376 0.35 -1.7 756,798 + MPMX19_03376 0.35 -0.2 756,798 + MPMX19_03376 0.35 -0.8 756,798 + MPMX19_03376 0.35 -1.5 756,798 + MPMX19_03376 0.35 -0.8 756,799 - MPMX19_03376 0.35 -0.9 756,799 - MPMX19_03376 0.35 +0.2 756,799 - MPMX19_03376 0.35 -1.5 756,933 - MPMX19_03376 0.37 -0.9 756,933 - MPMX19_03376 0.37 -0.4 756,933 - MPMX19_03376 0.37 +0.0 757,011 + MPMX19_03376 0.39 +0.1 757,011 + MPMX19_03376 0.39 -2.0 757,012 - MPMX19_03376 0.39 -1.1 757,415 + MPMX19_03376 0.45 +0.8 757,415 + MPMX19_03376 0.45 -0.9 757,476 + MPMX19_03376 0.46 -0.3 757,477 - MPMX19_03376 0.46 -1.4 757,477 - MPMX19_03376 0.46 -0.2 757,477 - MPMX19_03376 0.46 +0.3 757,655 - MPMX19_03376 0.49 -0.5 757,731 + MPMX19_03376 0.51 +1.1 757,731 + MPMX19_03376 0.51 -0.0 757,731 + MPMX19_03376 0.51 +0.5 757,732 - MPMX19_03376 0.51 -1.9 757,732 - MPMX19_03376 0.51 +0.5 757,732 - MPMX19_03376 0.51 -0.1 757,948 - MPMX19_03376 0.54 -3.1 757,948 - MPMX19_03376 0.54 +0.4 757,948 - MPMX19_03376 0.54 +0.1 757,948 - MPMX19_03376 0.54 -1.0 758,421 + MPMX19_03376 0.62 +0.5 758,421 + MPMX19_03376 0.62 -1.5 758,421 + MPMX19_03376 0.62 -0.3 758,421 + MPMX19_03376 0.62 -0.4 758,422 - MPMX19_03376 0.62 -0.3 758,422 - MPMX19_03376 0.62 -0.7 759,065 - MPMX19_03376 0.73 -1.4 760,720 + +0.5 760,720 + -0.8 760,721 - -0.6 760,747 + +1.0 760,772 - -1.3 760,788 + -1.3 760,909 + -0.3 760,909 + +1.1 760,910 - +0.2 760,910 - +0.3 760,910 - -0.9 760,910 - -0.8 760,910 - -0.9 761,137 + MPMX19_03377 0.30 +0.4 761,137 + MPMX19_03377 0.30 -1.8 761,137 + MPMX19_03377 0.30 -1.0 761,137 + MPMX19_03377 0.30 -0.5 761,137 + MPMX19_03377 0.30 -1.7 761,137 + MPMX19_03377 0.30 -1.7 761,137 + MPMX19_03377 0.30 +0.5 761,137 + MPMX19_03377 0.30 +0.3 761,137 + MPMX19_03377 0.30 -1.2 761,137 + MPMX19_03377 0.30 -0.1 761,137 + MPMX19_03377 0.30 -0.3 761,137 + MPMX19_03377 0.30 +0.2 761,137 + MPMX19_03377 0.30 -1.0 761,138 - MPMX19_03377 0.30 -2.0 761,138 - MPMX19_03377 0.30 +0.2 761,138 - MPMX19_03377 0.30 -0.1 761,138 - MPMX19_03377 0.30 -0.1 761,138 - MPMX19_03377 0.30 +0.5 761,138 - MPMX19_03377 0.30 -0.0 761,138 - MPMX19_03377 0.30 -0.1 761,138 - MPMX19_03377 0.30 +0.1 761,138 - MPMX19_03377 0.30 +1.1 761,138 - MPMX19_03377 0.30 -1.0 761,138 - MPMX19_03377 0.30 -0.3 761,138 - MPMX19_03377 0.30 +0.7 761,209 + MPMX19_03377 0.37 +0.0 761,209 + MPMX19_03377 0.37 -2.2 761,209 + MPMX19_03377 0.37 -0.0 761,210 - MPMX19_03377 0.37 -2.0 761,210 - MPMX19_03377 0.37 -2.0 761,210 - MPMX19_03377 0.37 +0.1 761,210 - MPMX19_03377 0.37 +0.0 761,210 - MPMX19_03377 0.37 -0.2 761,210 - MPMX19_03377 0.37 +0.2 761,210 - MPMX19_03377 0.37 +0.9 761,662 + MPMX19_03377 0.80 -1.7 761,662 + MPMX19_03377 0.80 -0.5 761,662 + MPMX19_03377 0.80 -1.6 761,663 - MPMX19_03377 0.80 +1.0
Or see this region's nucleotide sequence