Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03279 and MPMX19_03280 are separated by 29 nucleotides MPMX19_03280 and MPMX19_03281 overlap by 4 nucleotides MPMX19_03281 and MPMX19_03282 are separated by 39 nucleotides MPMX19_03282 and MPMX19_03283 are separated by 101 nucleotides
MPMX19_03279: MPMX19_03279 - hypothetical protein, at 624,971 to 626,230
_03279
MPMX19_03280: MPMX19_03280 - Inner membrane ABC transporter permease protein YdcV, at 626,260 to 627,075
_03280
MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818
_03281
MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541
_03282
MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956
_03283
Position (kb) 627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.087 kb on + strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.088 kb on - strand, within MPMX19_03279 at 626.099 kb on + strand, within MPMX19_03279 at 626.099 kb on + strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.100 kb on - strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.102 kb on + strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.103 kb on - strand, within MPMX19_03279 at 626.177 kb on + strand at 626.177 kb on + strand at 626.300 kb on - strand at 626.300 kb on - strand at 626.389 kb on + strand, within MPMX19_03280 at 626.390 kb on - strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.419 kb on + strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.420 kb on - strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.629 kb on + strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.630 kb on - strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.665 kb on + strand, within MPMX19_03280 at 626.666 kb on - strand, within MPMX19_03280 at 626.666 kb on - strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.770 kb on + strand, within MPMX19_03280 at 626.771 kb on - strand, within MPMX19_03280 at 627.501 kb on + strand, within MPMX19_03281 at 627.501 kb on + strand, within MPMX19_03281 at 627.501 kb on + strand, within MPMX19_03281 at 627.502 kb on - strand, within MPMX19_03281 at 627.502 kb on - strand, within MPMX19_03281 at 627.738 kb on + strand, within MPMX19_03281 at 627.738 kb on + strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.739 kb on - strand, within MPMX19_03281 at 627.791 kb on + strand at 627.792 kb on - strand at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.012 kb on + strand, within MPMX19_03282 at 628.013 kb on - strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.036 kb on + strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.037 kb on - strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.149 kb on + strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.150 kb on - strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.300 kb on + strand, within MPMX19_03282 at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.495 kb on + strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.496 kb on - strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.622 kb on + strand at 628.623 kb on - strand at 628.623 kb on - strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.624 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.629 kb on + strand at 628.630 kb on - strand at 628.630 kb on - strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.743 kb on + strand at 628.744 kb on - strand at 628.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 626,087 + MPMX19_03279 0.89 +0.2 626,087 + MPMX19_03279 0.89 -1.6 626,087 + MPMX19_03279 0.89 -2.7 626,087 + MPMX19_03279 0.89 -0.5 626,087 + MPMX19_03279 0.89 -0.7 626,087 + MPMX19_03279 0.89 +1.0 626,087 + MPMX19_03279 0.89 +1.0 626,087 + MPMX19_03279 0.89 -0.0 626,087 + MPMX19_03279 0.89 -0.3 626,088 - MPMX19_03279 0.89 -0.2 626,088 - MPMX19_03279 0.89 +0.5 626,088 - MPMX19_03279 0.89 +1.2 626,088 - MPMX19_03279 0.89 -0.1 626,088 - MPMX19_03279 0.89 +0.5 626,088 - MPMX19_03279 0.89 +1.3 626,088 - MPMX19_03279 0.89 -2.9 626,088 - MPMX19_03279 0.89 +1.0 626,099 + MPMX19_03279 0.90 -1.0 626,099 + MPMX19_03279 0.90 -1.8 626,100 - MPMX19_03279 0.90 -1.3 626,100 - MPMX19_03279 0.90 +0.2 626,100 - MPMX19_03279 0.90 -1.0 626,102 + MPMX19_03279 0.90 -0.5 626,102 + MPMX19_03279 0.90 -1.1 626,102 + MPMX19_03279 0.90 +2.0 626,102 + MPMX19_03279 0.90 -1.1 626,103 - MPMX19_03279 0.90 -0.6 626,103 - MPMX19_03279 0.90 +0.2 626,103 - MPMX19_03279 0.90 -1.0 626,177 + +0.5 626,177 + -0.9 626,300 - -0.1 626,300 - -0.5 626,389 + MPMX19_03280 0.16 -0.6 626,390 - MPMX19_03280 0.16 -0.8 626,419 + MPMX19_03280 0.19 -0.7 626,419 + MPMX19_03280 0.19 +0.7 626,419 + MPMX19_03280 0.19 +0.2 626,419 + MPMX19_03280 0.19 -1.0 626,420 - MPMX19_03280 0.20 -0.3 626,420 - MPMX19_03280 0.20 +0.5 626,420 - MPMX19_03280 0.20 -0.0 626,420 - MPMX19_03280 0.20 -0.1 626,629 + MPMX19_03280 0.45 -2.2 626,629 + MPMX19_03280 0.45 +1.1 626,629 + MPMX19_03280 0.45 -0.8 626,629 + MPMX19_03280 0.45 -1.2 626,629 + MPMX19_03280 0.45 +0.0 626,629 + MPMX19_03280 0.45 +0.5 626,629 + MPMX19_03280 0.45 -0.9 626,629 + MPMX19_03280 0.45 +0.1 626,630 - MPMX19_03280 0.45 -0.5 626,630 - MPMX19_03280 0.45 +0.6 626,630 - MPMX19_03280 0.45 -0.4 626,630 - MPMX19_03280 0.45 -0.2 626,630 - MPMX19_03280 0.45 +0.4 626,630 - MPMX19_03280 0.45 -1.4 626,665 + MPMX19_03280 0.50 -0.1 626,665 + MPMX19_03280 0.50 +1.1 626,665 + MPMX19_03280 0.50 -1.9 626,665 + MPMX19_03280 0.50 -1.2 626,665 + MPMX19_03280 0.50 -0.2 626,666 - MPMX19_03280 0.50 +0.3 626,666 - MPMX19_03280 0.50 -0.2 626,770 + MPMX19_03280 0.62 -0.9 626,770 + MPMX19_03280 0.62 -1.2 626,770 + MPMX19_03280 0.62 -1.0 626,771 - MPMX19_03280 0.63 -1.0 627,501 + MPMX19_03281 0.57 -1.5 627,501 + MPMX19_03281 0.57 -0.7 627,501 + MPMX19_03281 0.57 -1.8 627,502 - MPMX19_03281 0.58 -0.3 627,502 - MPMX19_03281 0.58 -0.6 627,738 + MPMX19_03281 0.89 -1.0 627,738 + MPMX19_03281 0.89 -2.1 627,739 - MPMX19_03281 0.89 -0.8 627,739 - MPMX19_03281 0.89 -1.0 627,739 - MPMX19_03281 0.89 -0.0 627,791 + -1.9 627,792 - +0.4 628,012 + MPMX19_03282 0.23 +1.5 628,012 + MPMX19_03282 0.23 -0.7 628,012 + MPMX19_03282 0.23 -0.0 628,012 + MPMX19_03282 0.23 -2.7 628,012 + MPMX19_03282 0.23 -1.6 628,013 - MPMX19_03282 0.23 -1.1 628,036 + MPMX19_03282 0.26 -0.3 628,036 + MPMX19_03282 0.26 -0.8 628,036 + MPMX19_03282 0.26 -0.8 628,037 - MPMX19_03282 0.26 -1.0 628,037 - MPMX19_03282 0.26 -0.3 628,037 - MPMX19_03282 0.26 -0.3 628,149 + MPMX19_03282 0.43 +0.8 628,149 + MPMX19_03282 0.43 -1.2 628,149 + MPMX19_03282 0.43 -0.0 628,149 + MPMX19_03282 0.43 -0.0 628,150 - MPMX19_03282 0.43 +0.5 628,150 - MPMX19_03282 0.43 +0.5 628,150 - MPMX19_03282 0.43 -1.1 628,150 - MPMX19_03282 0.43 -0.0 628,150 - MPMX19_03282 0.43 -1.5 628,300 + MPMX19_03282 0.65 -0.8 628,300 + MPMX19_03282 0.65 -1.3 628,495 + -2.3 628,495 + +0.6 628,495 + +1.0 628,495 + -0.7 628,495 + -2.8 628,495 + +1.5 628,495 + +0.3 628,495 + -0.6 628,495 + -0.4 628,496 - -0.3 628,496 - -0.2 628,496 - -1.5 628,496 - +0.5 628,496 - -1.9 628,496 - -0.0 628,496 - -0.5 628,496 - -0.3 628,496 - -0.4 628,496 - -1.0 628,622 + +1.0 628,622 + +0.1 628,622 + +0.3 628,623 - -0.5 628,623 - -3.2 628,624 + -1.0 628,624 + -0.3 628,624 + -1.3 628,629 + +0.1 628,629 + -2.2 628,629 + -0.8 628,629 + -0.5 628,629 + -0.8 628,630 - +0.6 628,630 - -1.3 628,743 + -0.6 628,743 + -0.3 628,743 + -0.7 628,743 + +0.3 628,743 + -0.7 628,744 - +1.3 628,744 - +2.3
Or see this region's nucleotide sequence