Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03117 and MPMX19_03118 are separated by 206 nucleotides MPMX19_03118 and MPMX19_03119 are separated by 103 nucleotides MPMX19_03119 and MPMX19_03120 overlap by 35 nucleotides
MPMX19_03117: MPMX19_03117 - Catabolite control protein A, at 402,642 to 403,649
_03117
MPMX19_03118: MPMX19_03118 - hypothetical protein, at 403,856 to 404,062
_03118
MPMX19_03119: MPMX19_03119 - Transcriptional regulatory protein QseB, at 404,166 to 404,876
_03119
MPMX19_03120: MPMX19_03120 - Adaptive-response sensory-kinase SasA, at 404,842 to 407,397
_03120
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.979 kb on + strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.980 kb on - strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.985 kb on + strand, within MPMX19_03117 at 402.986 kb on - strand, within MPMX19_03117 at 402.986 kb on - strand, within MPMX19_03117 at 403.093 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.294 kb on + strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.295 kb on - strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.405 kb on + strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.406 kb on - strand, within MPMX19_03117 at 403.565 kb on + strand at 403.565 kb on + strand at 403.594 kb on - strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.684 kb on + strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.685 kb on - strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.769 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.855 kb on + strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.856 kb on - strand at 403.894 kb on - strand, within MPMX19_03118 at 404.162 kb on + strand at 404.162 kb on + strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.163 kb on - strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.173 kb on + strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.174 kb on - strand at 404.238 kb on + strand, within MPMX19_03119 at 404.239 kb on - strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.298 kb on + strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.299 kb on - strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.457 kb on + strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.458 kb on - strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.742 kb on + strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.743 kb on - strand, within MPMX19_03119 at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.811 kb on + strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.812 kb on - strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.910 kb on + strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 404.911 kb on - strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.001 kb on + strand at 405.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 402,979 + MPMX19_03117 0.33 +0.3 402,979 + MPMX19_03117 0.33 +0.6 402,979 + MPMX19_03117 0.33 -1.2 402,979 + MPMX19_03117 0.33 +0.6 402,980 - MPMX19_03117 0.34 -0.3 402,980 - MPMX19_03117 0.34 -0.7 402,980 - MPMX19_03117 0.34 -0.8 402,980 - MPMX19_03117 0.34 -1.1 402,985 + MPMX19_03117 0.34 -0.2 402,985 + MPMX19_03117 0.34 +1.6 402,985 + MPMX19_03117 0.34 -2.1 402,985 + MPMX19_03117 0.34 -1.1 402,986 - MPMX19_03117 0.34 -0.1 402,986 - MPMX19_03117 0.34 -0.2 403,093 + MPMX19_03117 0.45 -0.6 403,294 + MPMX19_03117 0.65 -0.5 403,294 + MPMX19_03117 0.65 +0.9 403,294 + MPMX19_03117 0.65 -0.1 403,295 - MPMX19_03117 0.65 -0.4 403,295 - MPMX19_03117 0.65 -1.2 403,295 - MPMX19_03117 0.65 -0.2 403,295 - MPMX19_03117 0.65 -0.7 403,405 + MPMX19_03117 0.76 -0.4 403,405 + MPMX19_03117 0.76 -1.2 403,406 - MPMX19_03117 0.76 -0.9 403,406 - MPMX19_03117 0.76 -0.3 403,406 - MPMX19_03117 0.76 -0.4 403,406 - MPMX19_03117 0.76 +0.8 403,406 - MPMX19_03117 0.76 -2.1 403,406 - MPMX19_03117 0.76 -1.4 403,406 - MPMX19_03117 0.76 +0.1 403,406 - MPMX19_03117 0.76 -0.5 403,565 + -1.6 403,565 + -0.0 403,594 - -0.7 403,684 + -0.4 403,684 + +1.2 403,684 + +0.4 403,684 + +0.2 403,684 + -0.6 403,685 - -0.6 403,685 - -0.9 403,685 - -0.6 403,685 - -0.7 403,685 - -0.0 403,685 - +1.0 403,769 + -0.6 403,769 + +0.7 403,769 + -0.2 403,769 + -1.2 403,855 + -0.9 403,855 + +0.1 403,855 + -0.7 403,855 + +0.2 403,855 + -0.0 403,855 + +0.2 403,855 + -1.0 403,856 - +0.3 403,856 - -0.1 403,856 - -2.0 403,856 - -0.8 403,856 - +0.9 403,856 - -0.0 403,856 - +0.5 403,856 - -1.7 403,856 - -0.0 403,894 - MPMX19_03118 0.18 +1.0 404,162 + +0.6 404,162 + -2.4 404,163 - -0.2 404,163 - -0.6 404,163 - +0.6 404,163 - -1.2 404,173 + -0.0 404,173 + -0.0 404,173 + -0.6 404,173 + -0.7 404,174 - -1.7 404,174 - -0.4 404,174 - +0.6 404,174 - +0.9 404,174 - +0.2 404,174 - +0.5 404,174 - +1.2 404,174 - -1.0 404,174 - -1.2 404,238 + MPMX19_03119 0.10 -0.2 404,239 - MPMX19_03119 0.10 -1.5 404,298 + MPMX19_03119 0.19 -1.2 404,298 + MPMX19_03119 0.19 -1.4 404,298 + MPMX19_03119 0.19 +0.1 404,298 + MPMX19_03119 0.19 -0.6 404,299 - MPMX19_03119 0.19 -1.7 404,299 - MPMX19_03119 0.19 -1.0 404,299 - MPMX19_03119 0.19 -0.0 404,299 - MPMX19_03119 0.19 -0.6 404,299 - MPMX19_03119 0.19 -0.1 404,299 - MPMX19_03119 0.19 -1.6 404,299 - MPMX19_03119 0.19 +1.7 404,299 - MPMX19_03119 0.19 -0.4 404,299 - MPMX19_03119 0.19 -0.3 404,457 + MPMX19_03119 0.41 +1.2 404,457 + MPMX19_03119 0.41 -1.4 404,457 + MPMX19_03119 0.41 +0.4 404,457 + MPMX19_03119 0.41 +0.6 404,457 + MPMX19_03119 0.41 +0.2 404,457 + MPMX19_03119 0.41 +0.2 404,457 + MPMX19_03119 0.41 -0.2 404,457 + MPMX19_03119 0.41 +0.7 404,457 + MPMX19_03119 0.41 -0.0 404,457 + MPMX19_03119 0.41 -0.2 404,458 - MPMX19_03119 0.41 -2.0 404,458 - MPMX19_03119 0.41 -0.0 404,458 - MPMX19_03119 0.41 +0.3 404,458 - MPMX19_03119 0.41 -0.5 404,458 - MPMX19_03119 0.41 +1.3 404,742 + MPMX19_03119 0.81 -1.0 404,742 + MPMX19_03119 0.81 -1.7 404,742 + MPMX19_03119 0.81 -1.5 404,742 + MPMX19_03119 0.81 -1.0 404,742 + MPMX19_03119 0.81 -1.1 404,742 + MPMX19_03119 0.81 -0.6 404,742 + MPMX19_03119 0.81 -0.2 404,742 + MPMX19_03119 0.81 -1.6 404,742 + MPMX19_03119 0.81 +0.5 404,742 + MPMX19_03119 0.81 +1.6 404,743 - MPMX19_03119 0.81 +0.2 404,743 - MPMX19_03119 0.81 -2.1 404,743 - MPMX19_03119 0.81 -1.6 404,743 - MPMX19_03119 0.81 -2.9 404,811 + +0.1 404,811 + -0.8 404,811 + -2.0 404,811 + +0.2 404,811 + -3.1 404,811 + -0.9 404,811 + -0.2 404,811 + +0.9 404,812 - -0.5 404,812 - +0.0 404,812 - -0.9 404,812 - +0.1 404,812 - -0.7 404,812 - +0.1 404,812 - +1.7 404,812 - -1.1 404,812 - +0.0 404,812 - +0.3 404,812 - -1.9 404,812 - -0.1 404,812 - +0.2 404,812 - +0.1 404,910 + -0.3 404,910 + -0.0 404,910 + -0.6 404,910 + +0.6 404,911 - -1.0 404,911 - -1.9 404,911 - +0.8 404,911 - -2.9 404,911 - -1.7 405,001 + +0.4 405,001 + +0.1 405,001 + -0.6 405,001 + +1.1 405,001 + -0.6 405,001 + +1.0 405,001 + -1.2 405,001 + -1.2 405,001 + -0.7 405,002 - +0.8
Or see this region's nucleotide sequence