Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02978 and MPMX19_02979 are separated by 13 nucleotides MPMX19_02979 and MPMX19_02980 overlap by 4 nucleotides MPMX19_02980 and MPMX19_02981 overlap by 20 nucleotides
MPMX19_02978: MPMX19_02978 - Hydrogen cyanide synthase subunit HcnC, at 239,784 to 240,926
_02978
MPMX19_02979: MPMX19_02979 - Hydrogen cyanide synthase subunit HcnB, at 240,940 to 242,397
_02979
MPMX19_02980: MPMX19_02980 - Hydrogen cyanide synthase subunit HcnA, at 242,394 to 242,696
_02980
MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810
_02981
Position (kb) 240
241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.354 kb on + strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 240.355 kb on - strand, within MPMX19_02978 at 241.035 kb on - strand at 241.037 kb on + strand at 241.037 kb on + strand at 241.038 kb on - strand at 241.038 kb on - strand at 241.038 kb on - strand at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.268 kb on + strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.269 kb on - strand, within MPMX19_02979 at 241.631 kb on + strand, within MPMX19_02979 at 241.632 kb on - strand, within MPMX19_02979 at 241.632 kb on - strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.856 kb on + strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 241.857 kb on - strand, within MPMX19_02979 at 242.259 kb on - strand at 242.259 kb on - strand at 242.375 kb on - strand at 242.506 kb on + strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.507 kb on - strand, within MPMX19_02980 at 242.528 kb on - strand, within MPMX19_02980 at 242.846 kb on + strand, within MPMX19_02981 at 242.846 kb on + strand, within MPMX19_02981 at 242.847 kb on - strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.044 kb on + strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.045 kb on - strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 240,354 + MPMX19_02978 0.50 -1.3 240,354 + MPMX19_02978 0.50 +0.3 240,354 + MPMX19_02978 0.50 -0.6 240,354 + MPMX19_02978 0.50 +0.2 240,355 - MPMX19_02978 0.50 +0.1 240,355 - MPMX19_02978 0.50 -1.5 240,355 - MPMX19_02978 0.50 -0.4 240,355 - MPMX19_02978 0.50 -0.4 240,355 - MPMX19_02978 0.50 +0.3 241,035 - -0.7 241,037 + +0.7 241,037 + +0.2 241,038 - +0.3 241,038 - -1.0 241,038 - -2.2 241,268 + MPMX19_02979 0.22 -0.6 241,268 + MPMX19_02979 0.22 -0.2 241,268 + MPMX19_02979 0.22 -0.2 241,268 + MPMX19_02979 0.22 -2.4 241,268 + MPMX19_02979 0.22 -0.3 241,268 + MPMX19_02979 0.22 -1.6 241,269 - MPMX19_02979 0.23 -0.3 241,269 - MPMX19_02979 0.23 +0.4 241,269 - MPMX19_02979 0.23 -1.9 241,269 - MPMX19_02979 0.23 +1.1 241,631 + MPMX19_02979 0.47 -3.0 241,632 - MPMX19_02979 0.47 -1.5 241,632 - MPMX19_02979 0.47 +0.2 241,856 + MPMX19_02979 0.63 -0.0 241,856 + MPMX19_02979 0.63 -0.4 241,856 + MPMX19_02979 0.63 -1.4 241,856 + MPMX19_02979 0.63 -1.6 241,856 + MPMX19_02979 0.63 -0.2 241,857 - MPMX19_02979 0.63 -2.0 241,857 - MPMX19_02979 0.63 -1.6 242,259 - -0.5 242,259 - -2.1 242,375 - -0.7 242,506 + MPMX19_02980 0.37 -1.2 242,507 - MPMX19_02980 0.37 -0.7 242,507 - MPMX19_02980 0.37 -2.0 242,528 - MPMX19_02980 0.44 -0.6 242,846 + MPMX19_02981 0.15 -0.7 242,846 + MPMX19_02981 0.15 +0.6 242,847 - MPMX19_02981 0.15 -1.7 243,044 + MPMX19_02981 0.32 -2.1 243,044 + MPMX19_02981 0.32 -1.4 243,045 - MPMX19_02981 0.32 -1.4 243,045 - MPMX19_02981 0.32 -2.2 243,045 - MPMX19_02981 0.32 -0.2 243,347 + MPMX19_02981 0.59 -2.1 243,347 + MPMX19_02981 0.59 -1.0 243,347 + MPMX19_02981 0.59 -0.7 243,347 + MPMX19_02981 0.59 -2.5 243,347 + MPMX19_02981 0.59 -2.7 243,347 + MPMX19_02981 0.59 -0.0 243,347 + MPMX19_02981 0.59 -1.7 243,347 + MPMX19_02981 0.59 -2.2 243,348 - MPMX19_02981 0.59 -1.0 243,348 - MPMX19_02981 0.59 -0.3 243,348 - MPMX19_02981 0.59 -0.3 243,348 - MPMX19_02981 0.59 -1.0 243,348 - MPMX19_02981 0.59 +0.8 243,348 - MPMX19_02981 0.59 -1.6 243,348 - MPMX19_02981 0.59 -1.2
Or see this region's nucleotide sequence