Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02939

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02937 and MPMX19_02938 are separated by 24 nucleotidesMPMX19_02938 and MPMX19_02939 are separated by 71 nucleotidesMPMX19_02939 and MPMX19_02940 are separated by 10 nucleotides MPMX19_02937: MPMX19_02937 - hypothetical protein, at 192,531 to 193,034 _02937 MPMX19_02938: MPMX19_02938 - hypothetical protein, at 193,059 to 193,502 _02938 MPMX19_02939: MPMX19_02939 - Putative formate dehydrogenase, at 193,574 to 196,345 _02939 MPMX19_02940: MPMX19_02940 - hypothetical protein, at 196,356 to 198,143 _02940 Position (kb) 193 194 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937at 193.146 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.299 kb on + strand, within MPMX19_02938at 193.299 kb on + strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.306 kb on - strand, within MPMX19_02938at 193.306 kb on - strand, within MPMX19_02938at 193.501 kb on - strandat 193.501 kb on - strandat 193.576 kb on - strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 194.071 kb on - strand, within MPMX19_02939at 194.071 kb on - strand, within MPMX19_02939at 194.167 kb on + strand, within MPMX19_02939at 194.167 kb on + strand, within MPMX19_02939at 194.167 kb on + strand, within MPMX19_02939at 194.168 kb on - strand, within MPMX19_02939at 194.168 kb on - strand, within MPMX19_02939at 194.168 kb on - strand, within MPMX19_02939at 194.168 kb on - strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.169 kb on + strand, within MPMX19_02939at 194.170 kb on - strand, within MPMX19_02939at 194.170 kb on - strand, within MPMX19_02939at 194.170 kb on - strand, within MPMX19_02939at 194.170 kb on - strand, within MPMX19_02939at 194.457 kb on + strand, within MPMX19_02939at 194.457 kb on + strand, within MPMX19_02939at 194.457 kb on + strand, within MPMX19_02939at 194.457 kb on + strand, within MPMX19_02939at 194.457 kb on + strand, within MPMX19_02939at 194.545 kb on - strand, within MPMX19_02939at 194.553 kb on + strand, within MPMX19_02939at 194.553 kb on + strand, within MPMX19_02939at 194.554 kb on - strand, within MPMX19_02939at 194.554 kb on - strand, within MPMX19_02939at 194.589 kb on + strand, within MPMX19_02939at 194.589 kb on + strand, within MPMX19_02939at 194.589 kb on + strand, within MPMX19_02939at 194.590 kb on - strand, within MPMX19_02939at 194.598 kb on + strand, within MPMX19_02939at 194.598 kb on + strand, within MPMX19_02939at 194.598 kb on + strand, within MPMX19_02939at 194.599 kb on - strand, within MPMX19_02939at 194.599 kb on - strand, within MPMX19_02939at 194.865 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.919 kb on + strand, within MPMX19_02939at 194.920 kb on - strand, within MPMX19_02939at 194.920 kb on - strand, within MPMX19_02939at 194.920 kb on - strand, within MPMX19_02939at 194.920 kb on - strand, within MPMX19_02939at 194.920 kb on - strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.931 kb on + strand, within MPMX19_02939at 194.932 kb on - strand, within MPMX19_02939at 195.297 kb on + strand, within MPMX19_02939at 195.297 kb on + strand, within MPMX19_02939at 195.297 kb on + strand, within MPMX19_02939at 195.297 kb on + strand, within MPMX19_02939at 195.297 kb on + strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.298 kb on - strand, within MPMX19_02939at 195.522 kb on + strand, within MPMX19_02939at 195.522 kb on + strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.645 kb on + strand, within MPMX19_02939at 195.645 kb on + strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.688 kb on - strand, within MPMX19_02939at 195.688 kb on - strand, within MPMX19_02939at 196.357 kb on + strandat 196.358 kb on - strandat 196.358 kb on - strandat 196.783 kb on + strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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192,729 + MPMX19_02937 0.39 -1.6
192,729 + MPMX19_02937 0.39 +0.4
192,729 + MPMX19_02937 0.39 +0.2
192,730 - MPMX19_02937 0.39 +0.9
192,730 - MPMX19_02937 0.39 +2.1
193,146 + MPMX19_02938 0.20 +0.3
193,167 + MPMX19_02938 0.24 +0.2
193,167 + MPMX19_02938 0.24 +2.8
193,167 + MPMX19_02938 0.24 +0.4
193,167 + MPMX19_02938 0.24 -2.2
193,168 - MPMX19_02938 0.25 -0.7
193,168 - MPMX19_02938 0.25 -1.9
193,168 - MPMX19_02938 0.25 -1.2
193,168 - MPMX19_02938 0.25 +1.6
193,168 - MPMX19_02938 0.25 -2.0
193,299 + MPMX19_02938 0.54 -0.3
193,299 + MPMX19_02938 0.54 -1.0
193,300 - MPMX19_02938 0.54 +1.2
193,300 - MPMX19_02938 0.54 -3.1
193,300 - MPMX19_02938 0.54 +0.9
193,305 + MPMX19_02938 0.55 -0.6
193,305 + MPMX19_02938 0.55 -1.0
193,305 + MPMX19_02938 0.55 +0.1
193,305 + MPMX19_02938 0.55 -1.2
193,305 + MPMX19_02938 0.55 -0.4
193,305 + MPMX19_02938 0.55 +0.0
193,306 - MPMX19_02938 0.56 -1.6
193,306 - MPMX19_02938 0.56 -1.0
193,501 - +0.2
193,501 - +1.2
193,576 - -0.1
193,788 + -1.9
193,788 + -1.2
193,788 + -0.9
193,788 + +0.3
193,788 + -0.5
193,788 + -0.2
193,788 + -1.6
193,788 + -0.1
193,788 + -0.4
193,789 - -2.1
193,789 - -0.2
193,789 - -1.0
193,789 - +0.2
193,789 - -1.6
193,789 - -0.7
193,789 - -0.4
193,789 - +0.4
193,789 - +0.3
193,789 - +0.6
193,836 + -0.1
193,836 + +0.8
193,836 + -0.4
193,836 + -1.4
193,836 + +0.4
193,836 + -2.1
193,836 + +0.7
193,836 + -0.5
193,836 + -0.4
193,836 + -1.1
193,836 + +0.5
193,836 + -0.4
193,836 + -1.7
193,836 + -0.3
193,837 - +1.4
193,837 - -0.6
193,837 - -0.6
193,837 - -1.6
193,837 - +0.4
193,837 - -2.0
193,837 - -1.1
194,071 - MPMX19_02939 0.18 -0.1
194,071 - MPMX19_02939 0.18 -0.4
194,167 + MPMX19_02939 0.21 -1.4
194,167 + MPMX19_02939 0.21 -1.6
194,167 + MPMX19_02939 0.21 -1.4
194,168 - MPMX19_02939 0.21 +0.2
194,168 - MPMX19_02939 0.21 -0.9
194,168 - MPMX19_02939 0.21 -0.9
194,168 - MPMX19_02939 0.21 -0.8
194,169 + MPMX19_02939 0.21 +0.4
194,169 + MPMX19_02939 0.21 -0.2
194,169 + MPMX19_02939 0.21 +0.9
194,169 + MPMX19_02939 0.21 +0.0
194,169 + MPMX19_02939 0.21 +0.0
194,169 + MPMX19_02939 0.21 -0.6
194,170 - MPMX19_02939 0.22 -0.5
194,170 - MPMX19_02939 0.22 +0.4
194,170 - MPMX19_02939 0.22 +0.0
194,170 - MPMX19_02939 0.22 -1.6
194,457 + MPMX19_02939 0.32 -1.1
194,457 + MPMX19_02939 0.32 +0.2
194,457 + MPMX19_02939 0.32 -1.6
194,457 + MPMX19_02939 0.32 +0.7
194,457 + MPMX19_02939 0.32 -1.1
194,545 - MPMX19_02939 0.35 -1.4
194,553 + MPMX19_02939 0.35 +0.8
194,553 + MPMX19_02939 0.35 -0.3
194,554 - MPMX19_02939 0.35 +0.4
194,554 - MPMX19_02939 0.35 +0.4
194,589 + MPMX19_02939 0.37 -0.1
194,589 + MPMX19_02939 0.37 +1.2
194,589 + MPMX19_02939 0.37 +0.2
194,590 - MPMX19_02939 0.37 -0.4
194,598 + MPMX19_02939 0.37 -1.2
194,598 + MPMX19_02939 0.37 +0.3
194,598 + MPMX19_02939 0.37 -1.3
194,599 - MPMX19_02939 0.37 -1.4
194,599 - MPMX19_02939 0.37 +1.6
194,865 + MPMX19_02939 0.47 -0.2
194,919 + MPMX19_02939 0.49 -0.3
194,919 + MPMX19_02939 0.49 +0.3
194,919 + MPMX19_02939 0.49 -1.0
194,919 + MPMX19_02939 0.49 +1.6
194,919 + MPMX19_02939 0.49 -0.6
194,919 + MPMX19_02939 0.49 -0.3
194,920 - MPMX19_02939 0.49 +1.0
194,920 - MPMX19_02939 0.49 -0.1
194,920 - MPMX19_02939 0.49 +0.2
194,920 - MPMX19_02939 0.49 +1.6
194,920 - MPMX19_02939 0.49 +0.0
194,931 + MPMX19_02939 0.49 -1.2
194,931 + MPMX19_02939 0.49 +0.3
194,931 + MPMX19_02939 0.49 -1.1
194,931 + MPMX19_02939 0.49 -0.6
194,931 + MPMX19_02939 0.49 +0.4
194,931 + MPMX19_02939 0.49 +0.3
194,931 + MPMX19_02939 0.49 +0.1
194,931 + MPMX19_02939 0.49 -0.3
194,932 - MPMX19_02939 0.49 +0.1
195,297 + MPMX19_02939 0.62 -2.3
195,297 + MPMX19_02939 0.62 -0.1
195,297 + MPMX19_02939 0.62 -1.6
195,297 + MPMX19_02939 0.62 +0.9
195,297 + MPMX19_02939 0.62 -0.7
195,298 - MPMX19_02939 0.62 +0.3
195,298 - MPMX19_02939 0.62 +0.5
195,298 - MPMX19_02939 0.62 +0.1
195,298 - MPMX19_02939 0.62 +0.6
195,298 - MPMX19_02939 0.62 -0.2
195,298 - MPMX19_02939 0.62 -1.4
195,298 - MPMX19_02939 0.62 -2.6
195,298 - MPMX19_02939 0.62 -0.6
195,298 - MPMX19_02939 0.62 +0.7
195,298 - MPMX19_02939 0.62 -1.0
195,522 + MPMX19_02939 0.70 -0.6
195,522 + MPMX19_02939 0.70 -0.3
195,523 - MPMX19_02939 0.70 -0.1
195,523 - MPMX19_02939 0.70 -1.0
195,523 - MPMX19_02939 0.70 -0.4
195,616 + MPMX19_02939 0.74 +0.3
195,616 + MPMX19_02939 0.74 -0.4
195,616 + MPMX19_02939 0.74 +0.0
195,616 + MPMX19_02939 0.74 -1.0
195,616 + MPMX19_02939 0.74 +0.1
195,616 + MPMX19_02939 0.74 +0.6
195,616 + MPMX19_02939 0.74 -0.3
195,616 + MPMX19_02939 0.74 -0.6
195,616 + MPMX19_02939 0.74 +0.9
195,616 + MPMX19_02939 0.74 -2.1
195,617 - MPMX19_02939 0.74 -1.6
195,617 - MPMX19_02939 0.74 +1.0
195,617 - MPMX19_02939 0.74 +0.2
195,617 - MPMX19_02939 0.74 +0.3
195,617 - MPMX19_02939 0.74 -0.4
195,617 - MPMX19_02939 0.74 -0.4
195,617 - MPMX19_02939 0.74 +0.0
195,618 + MPMX19_02939 0.74 -1.9
195,618 + MPMX19_02939 0.74 -0.3
195,618 + MPMX19_02939 0.74 -0.5
195,618 + MPMX19_02939 0.74 +0.2
195,618 + MPMX19_02939 0.74 +0.1
195,618 + MPMX19_02939 0.74 -0.8
195,619 - MPMX19_02939 0.74 +0.1
195,619 - MPMX19_02939 0.74 -2.0
195,619 - MPMX19_02939 0.74 -0.4
195,619 - MPMX19_02939 0.74 -2.3
195,645 + MPMX19_02939 0.75 -1.4
195,645 + MPMX19_02939 0.75 -0.8
195,646 - MPMX19_02939 0.75 -1.2
195,646 - MPMX19_02939 0.75 -0.4
195,646 - MPMX19_02939 0.75 +0.3
195,646 - MPMX19_02939 0.75 -0.5
195,646 - MPMX19_02939 0.75 +1.2
195,687 + MPMX19_02939 0.76 +0.7
195,687 + MPMX19_02939 0.76 -1.0
195,687 + MPMX19_02939 0.76 -0.7
195,688 - MPMX19_02939 0.76 -2.4
195,688 - MPMX19_02939 0.76 -0.7
196,357 + +0.4
196,358 - +0.2
196,358 - -1.3
196,783 + MPMX19_02940 0.24 -0.2
196,784 - MPMX19_02940 0.24 -1.0
196,784 - MPMX19_02940 0.24 -1.4
196,784 - MPMX19_02940 0.24 -1.2
196,822 + MPMX19_02940 0.26 +0.1
196,822 + MPMX19_02940 0.26 -1.0
196,822 + MPMX19_02940 0.26 -0.4
196,822 + MPMX19_02940 0.26 -3.1
197,119 + MPMX19_02940 0.43 +0.3
197,119 + MPMX19_02940 0.43 +0.4
197,119 + MPMX19_02940 0.43 -1.6
197,119 + MPMX19_02940 0.43 +0.0
197,120 - MPMX19_02940 0.43 -1.0
197,120 - MPMX19_02940 0.43 -1.0
197,120 - MPMX19_02940 0.43 +0.5
197,120 - MPMX19_02940 0.43 -1.7
197,120 - MPMX19_02940 0.43 -0.9
197,120 - MPMX19_02940 0.43 +1.4
197,236 + MPMX19_02940 0.49 -0.5
197,236 + MPMX19_02940 0.49 -1.2
197,236 + MPMX19_02940 0.49 -0.4
197,236 + MPMX19_02940 0.49 -0.3
197,236 + MPMX19_02940 0.49 -0.5
197,236 + MPMX19_02940 0.49 +0.6
197,237 - MPMX19_02940 0.49 -1.1
197,237 - MPMX19_02940 0.49 -0.4
197,237 - MPMX19_02940 0.49 -0.8
197,237 - MPMX19_02940 0.49 +1.1
197,237 - MPMX19_02940 0.49 -1.6
197,237 - MPMX19_02940 0.49 -0.6
197,237 - MPMX19_02940 0.49 -0.5
197,242 + MPMX19_02940 0.50 -1.6
197,242 + MPMX19_02940 0.50 -0.5
197,242 + MPMX19_02940 0.50 -0.6
197,242 + MPMX19_02940 0.50 -0.7
197,243 - MPMX19_02940 0.50 -2.5
197,243 - MPMX19_02940 0.50 +1.0
197,243 - MPMX19_02940 0.50 -1.5
197,243 - MPMX19_02940 0.50 -1.6
197,243 - MPMX19_02940 0.50 -2.3

Or see this region's nucleotide sequence