Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01732

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01730 and MPMX19_01731 overlap by 4 nucleotidesMPMX19_01731 and MPMX19_01732 are separated by 46 nucleotidesMPMX19_01732 and MPMX19_01733 are separated by 10 nucleotides MPMX19_01730: MPMX19_01730 - Ribonuclease J1, at 1,820,656 to 1,822,371 _01730 MPMX19_01731: MPMX19_01731 - Type III pantothenate kinase, at 1,822,368 to 1,823,141 _01731 MPMX19_01732: MPMX19_01732 - Bifunctional ligase/repressor BirA, at 1,823,188 to 1,824,000 _01732 MPMX19_01733: MPMX19_01733 - NADH-quinone oxidoreductase subunit N, at 1,824,011 to 1,825,459 _01733 Position (kb) 1823 1824 1825Strain fitness (log2 ratio) -2 -1 0 1 2at 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.241 kb on + strandat 1822.242 kb on - strandat 1822.242 kb on - strandat 1822.242 kb on - strandat 1822.242 kb on - strandat 1822.242 kb on - strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.292 kb on + strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strandat 1822.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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1,822,241 + -0.1
1,822,241 + +1.8
1,822,241 + -0.6
1,822,241 + +0.5
1,822,241 + -0.2
1,822,241 + +0.2
1,822,241 + +0.4
1,822,241 + +0.1
1,822,241 + +0.4
1,822,242 - -0.2
1,822,242 - -1.5
1,822,242 - +0.7
1,822,242 - -2.7
1,822,242 - -0.5
1,822,292 + -2.3
1,822,292 + +0.9
1,822,292 + +0.1
1,822,292 + -0.8
1,822,292 + +0.0
1,822,292 + +0.3
1,822,292 + -0.5
1,822,292 + +0.6
1,822,292 + -1.1
1,822,292 + -0.1
1,822,292 + -0.4
1,822,292 + -0.9
1,822,292 + -0.9
1,822,293 - -1.1
1,822,293 - +0.9
1,822,293 - -0.5
1,822,293 - +0.5
1,822,293 - +0.1
1,822,293 - -0.6
1,822,293 - -0.1
1,822,293 - +0.2
1,822,293 - +0.4
1,822,293 - -1.2
1,822,293 - -0.7
1,822,293 - -1.5
1,822,293 - -2.1
1,822,293 - -1.8
1,822,293 - -0.8

Or see this region's nucleotide sequence