Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00952 and MPMX19_00953 are separated by 79 nucleotides MPMX19_00953 and MPMX19_00954 are separated by 213 nucleotides MPMX19_00954 and MPMX19_00955 are separated by 127 nucleotides MPMX19_00955 and MPMX19_00956 are separated by 43 nucleotides MPMX19_00956 and MPMX19_00957 are separated by 261 nucleotides
MPMX19_00952: MPMX19_00952 - hypothetical protein, at 992,441 to 993,295
_00952
MPMX19_00953: MPMX19_00953 - hypothetical protein, at 993,375 to 993,776
_00953
MPMX19_00954: MPMX19_00954 - Cyclic AMP receptor protein, at 993,990 to 994,724
_00954
MPMX19_00955: MPMX19_00955 - hypothetical protein, at 994,852 to 995,049
_00955
MPMX19_00956: MPMX19_00956 - hypothetical protein, at 995,093 to 995,287
_00956
MPMX19_00957: MPMX19_00957 - Phosphoribosyl-ATP pyrophosphatase, at 995,549 to 995,998
_00957
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.009 kb on + strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.010 kb on - strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.024 kb on + strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.025 kb on - strand, within MPMX19_00952 at 993.050 kb on - strand, within MPMX19_00952 at 993.050 kb on - strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.051 kb on + strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.052 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.086 kb on - strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.087 kb on + strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.088 kb on - strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.135 kb on + strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.136 kb on - strand, within MPMX19_00952 at 993.197 kb on - strand, within MPMX19_00952 at 993.311 kb on + strand at 993.311 kb on + strand at 993.311 kb on + strand at 993.312 kb on - strand at 993.312 kb on - strand at 993.347 kb on + strand at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.499 kb on + strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.500 kb on - strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.586 kb on + strand, within MPMX19_00953 at 993.587 kb on - strand, within MPMX19_00953 at 993.587 kb on - strand, within MPMX19_00953 at 993.879 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.932 kb on + strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.933 kb on - strand at 993.934 kb on - strand at 994.744 kb on + strand at 994.744 kb on + strand at 994.744 kb on + strand at 994.744 kb on + strand at 994.744 kb on + strand at 994.744 kb on + strand at 994.787 kb on + strand at 994.787 kb on + strand at 994.787 kb on + strand at 994.788 kb on - strand at 995.091 kb on + strand at 995.091 kb on + strand at 995.119 kb on - strand, within MPMX19_00956 at 995.119 kb on - strand, within MPMX19_00956 at 995.119 kb on - strand, within MPMX19_00956 at 995.119 kb on - strand, within MPMX19_00956 at 995.181 kb on + strand, within MPMX19_00956 at 995.181 kb on + strand, within MPMX19_00956 at 995.181 kb on + strand, within MPMX19_00956 at 995.181 kb on + strand, within MPMX19_00956 at 995.182 kb on - strand, within MPMX19_00956 at 995.182 kb on - strand, within MPMX19_00956 at 995.182 kb on - strand, within MPMX19_00956 at 995.182 kb on - strand, within MPMX19_00956 at 995.182 kb on - strand, within MPMX19_00956 at 995.317 kb on + strand at 995.317 kb on + strand at 995.317 kb on + strand at 995.317 kb on + strand at 995.317 kb on + strand at 995.317 kb on + strand at 995.317 kb on + strand at 995.318 kb on - strand at 995.318 kb on - strand at 995.318 kb on - strand at 995.318 kb on - strand at 995.318 kb on - strand at 995.319 kb on + strand at 995.384 kb on + strand at 995.384 kb on + strand at 995.384 kb on + strand at 995.384 kb on + strand at 995.384 kb on + strand at 995.384 kb on + strand at 995.385 kb on - strand at 995.385 kb on - strand at 995.385 kb on - strand at 995.385 kb on - strand at 995.386 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.558 kb on + strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.560 kb on + strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.588 kb on + strand at 995.589 kb on - strand at 995.589 kb on - strand at 995.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 993,009 + MPMX19_00952 0.66 -0.6 993,009 + MPMX19_00952 0.66 -1.4 993,009 + MPMX19_00952 0.66 -0.6 993,009 + MPMX19_00952 0.66 -0.6 993,009 + MPMX19_00952 0.66 -0.6 993,010 - MPMX19_00952 0.67 +0.1 993,010 - MPMX19_00952 0.67 -1.6 993,010 - MPMX19_00952 0.67 -1.2 993,010 - MPMX19_00952 0.67 +0.0 993,024 + MPMX19_00952 0.68 +0.4 993,024 + MPMX19_00952 0.68 -0.4 993,024 + MPMX19_00952 0.68 -0.0 993,024 + MPMX19_00952 0.68 +0.8 993,024 + MPMX19_00952 0.68 -1.7 993,025 - MPMX19_00952 0.68 -0.1 993,025 - MPMX19_00952 0.68 +0.4 993,025 - MPMX19_00952 0.68 -0.1 993,025 - MPMX19_00952 0.68 -0.3 993,050 - MPMX19_00952 0.71 -1.2 993,050 - MPMX19_00952 0.71 -0.2 993,051 + MPMX19_00952 0.71 -1.4 993,051 + MPMX19_00952 0.71 -0.6 993,051 + MPMX19_00952 0.71 -0.6 993,051 + MPMX19_00952 0.71 -0.3 993,052 - MPMX19_00952 0.71 +0.4 993,052 - MPMX19_00952 0.71 +0.9 993,052 - MPMX19_00952 0.71 +0.4 993,052 - MPMX19_00952 0.71 -1.6 993,052 - MPMX19_00952 0.71 +1.4 993,052 - MPMX19_00952 0.71 -1.2 993,052 - MPMX19_00952 0.71 -0.2 993,052 - MPMX19_00952 0.71 +0.3 993,086 - MPMX19_00952 0.75 -0.9 993,086 - MPMX19_00952 0.75 +0.1 993,086 - MPMX19_00952 0.75 -0.4 993,087 + MPMX19_00952 0.76 +0.4 993,087 + MPMX19_00952 0.76 +0.1 993,087 + MPMX19_00952 0.76 -3.2 993,087 + MPMX19_00952 0.76 -0.2 993,087 + MPMX19_00952 0.76 +0.1 993,087 + MPMX19_00952 0.76 -0.2 993,087 + MPMX19_00952 0.76 +0.3 993,087 + MPMX19_00952 0.76 +0.9 993,087 + MPMX19_00952 0.76 +1.2 993,087 + MPMX19_00952 0.76 +0.2 993,087 + MPMX19_00952 0.76 -1.4 993,087 + MPMX19_00952 0.76 -0.2 993,087 + MPMX19_00952 0.76 -0.7 993,087 + MPMX19_00952 0.76 +0.4 993,087 + MPMX19_00952 0.76 -0.4 993,087 + MPMX19_00952 0.76 -2.2 993,087 + MPMX19_00952 0.76 +0.3 993,087 + MPMX19_00952 0.76 -0.2 993,088 - MPMX19_00952 0.76 -1.4 993,088 - MPMX19_00952 0.76 -2.2 993,088 - MPMX19_00952 0.76 -0.4 993,088 - MPMX19_00952 0.76 -2.4 993,088 - MPMX19_00952 0.76 -0.7 993,088 - MPMX19_00952 0.76 -1.6 993,088 - MPMX19_00952 0.76 +0.0 993,088 - MPMX19_00952 0.76 -0.2 993,088 - MPMX19_00952 0.76 -0.2 993,088 - MPMX19_00952 0.76 -1.9 993,135 + MPMX19_00952 0.81 -0.4 993,135 + MPMX19_00952 0.81 +0.4 993,135 + MPMX19_00952 0.81 -3.2 993,136 - MPMX19_00952 0.81 -0.9 993,136 - MPMX19_00952 0.81 -0.9 993,136 - MPMX19_00952 0.81 +1.8 993,197 - MPMX19_00952 0.88 -0.1 993,311 + +0.2 993,311 + +1.0 993,311 + -0.5 993,312 - -0.6 993,312 - -0.2 993,347 + -1.6 993,499 + MPMX19_00953 0.31 +1.0 993,499 + MPMX19_00953 0.31 +0.4 993,499 + MPMX19_00953 0.31 +0.6 993,499 + MPMX19_00953 0.31 -2.9 993,499 + MPMX19_00953 0.31 -1.7 993,499 + MPMX19_00953 0.31 -0.4 993,499 + MPMX19_00953 0.31 +0.8 993,500 - MPMX19_00953 0.31 +0.4 993,500 - MPMX19_00953 0.31 -1.4 993,500 - MPMX19_00953 0.31 +0.5 993,500 - MPMX19_00953 0.31 +0.6 993,500 - MPMX19_00953 0.31 -0.4 993,500 - MPMX19_00953 0.31 -0.9 993,500 - MPMX19_00953 0.31 -0.6 993,500 - MPMX19_00953 0.31 -1.4 993,500 - MPMX19_00953 0.31 -0.2 993,500 - MPMX19_00953 0.31 -1.9 993,586 + MPMX19_00953 0.52 -0.8 993,586 + MPMX19_00953 0.52 -0.7 993,586 + MPMX19_00953 0.52 -2.2 993,586 + MPMX19_00953 0.52 -0.8 993,587 - MPMX19_00953 0.53 -0.4 993,587 - MPMX19_00953 0.53 -0.7 993,879 + +0.5 993,932 + -1.0 993,932 + +0.6 993,932 + +0.2 993,932 + -1.0 993,932 + +0.1 993,932 + +0.8 993,932 + -0.2 993,932 + -0.8 993,932 + +0.4 993,932 + +0.2 993,932 + -1.6 993,932 + -0.4 993,932 + +0.7 993,932 + -2.4 993,932 + +0.1 993,932 + +0.9 993,932 + -0.5 993,932 + +0.0 993,932 + -1.7 993,932 + -0.7 993,932 + -0.7 993,932 + -0.1 993,932 + -0.2 993,932 + +0.1 993,933 - -1.7 993,933 - +0.0 993,933 - +0.1 993,933 - -1.2 993,933 - -0.3 993,933 - +0.6 993,933 - +0.2 993,933 - -0.1 993,933 - -1.0 993,933 - -1.7 993,933 - +0.1 993,933 - -0.2 993,933 - -1.6 993,933 - -0.9 993,933 - +0.0 993,933 - +1.4 993,933 - +0.2 993,933 - -1.7 993,933 - +0.1 993,933 - +0.3 993,933 - +1.2 993,933 - -3.1 993,933 - -1.1 993,933 - +0.4 993,933 - -0.7 993,933 - -1.2 993,933 - +0.3 993,933 - -0.5 993,933 - -1.1 993,934 - -0.3 994,744 + +0.8 994,744 + +0.7 994,744 + +0.2 994,744 + -0.6 994,744 + -0.2 994,744 + -0.3 994,787 + -2.2 994,787 + -0.8 994,787 + -1.1 994,788 - -0.8 995,091 + -0.2 995,091 + +1.8 995,119 - MPMX19_00956 0.13 -1.3 995,119 - MPMX19_00956 0.13 -1.6 995,119 - MPMX19_00956 0.13 -0.6 995,119 - MPMX19_00956 0.13 -2.3 995,181 + MPMX19_00956 0.45 +0.4 995,181 + MPMX19_00956 0.45 +1.0 995,181 + MPMX19_00956 0.45 +2.1 995,181 + MPMX19_00956 0.45 +1.2 995,182 - MPMX19_00956 0.46 -1.6 995,182 - MPMX19_00956 0.46 +0.1 995,182 - MPMX19_00956 0.46 +1.1 995,182 - MPMX19_00956 0.46 -0.3 995,182 - MPMX19_00956 0.46 -0.2 995,317 + -1.7 995,317 + -0.3 995,317 + +0.0 995,317 + -1.9 995,317 + -1.2 995,317 + +0.3 995,317 + +0.1 995,318 - +0.2 995,318 - +2.2 995,318 - -0.9 995,318 - -0.2 995,318 - +0.8 995,319 + -0.6 995,384 + -1.0 995,384 + +0.0 995,384 + +0.7 995,384 + +0.1 995,384 + -1.2 995,384 + -0.4 995,385 - -2.0 995,385 - -0.9 995,385 - -1.2 995,385 - -2.7 995,386 + +0.0 995,558 + -1.6 995,558 + +0.0 995,558 + -0.2 995,558 + -0.4 995,558 + -0.2 995,558 + -0.3 995,558 + -0.9 995,558 + +0.4 995,558 + -0.2 995,558 + +0.1 995,558 + +0.8 995,558 + -0.1 995,558 + -0.4 995,558 + +0.7 995,558 + +0.7 995,558 + -0.0 995,558 + -0.3 995,558 + +0.1 995,558 + -0.5 995,558 + -1.4 995,558 + -1.6 995,558 + -0.2 995,559 - -0.2 995,559 - +1.4 995,559 - +0.7 995,559 - -0.7 995,559 - -0.3 995,559 - +0.7 995,559 - +0.2 995,559 - +0.0 995,559 - +0.8 995,559 - +0.1 995,559 - -1.6 995,559 - -3.2 995,559 - -0.3 995,559 - -0.5 995,559 - -1.5 995,559 - -0.9 995,559 - -2.5 995,559 - -2.2 995,559 - +1.2 995,559 - -2.2 995,559 - -0.4 995,559 - -0.8 995,559 - -1.6 995,559 - -0.2 995,559 - -1.2 995,559 - +0.6 995,559 - +2.1 995,560 + +1.4 995,560 + +0.1 995,560 + -2.2 995,560 + -0.2 995,560 + -1.2 995,560 + -0.2 995,560 + -2.2 995,560 + -0.7 995,560 + -0.3 995,561 - -0.8 995,561 - -0.6 995,561 - +0.9 995,561 - -0.2 995,561 - -0.3 995,588 + +0.8 995,588 + -0.2 995,588 + -1.4 995,588 + -1.2 995,588 + +0.0 995,588 + -0.3 995,588 + +0.1 995,589 - +0.9 995,589 - +0.6 995,589 - -0.7
Or see this region's nucleotide sequence