Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00856 and MPMX19_00857 are separated by 32 nucleotides MPMX19_00857 and MPMX19_00858 are separated by 115 nucleotides MPMX19_00858 and MPMX19_00859 overlap by 4 nucleotides MPMX19_00859 and MPMX19_00860 are separated by 22 nucleotides MPMX19_00860 and MPMX19_00861 overlap by 4 nucleotides
MPMX19_00856: MPMX19_00856 - Low affinity potassium transport system protein kup, at 889,377 to 891,275
_00856
MPMX19_00857: MPMX19_00857 - hypothetical protein, at 891,308 to 891,436
_00857
MPMX19_00858: MPMX19_00858 - Flagellar biosynthetic protein FliP, at 891,552 to 892,340
_00858
MPMX19_00859: MPMX19_00859 - hypothetical protein, at 892,337 to 892,678
_00859
MPMX19_00860: MPMX19_00860 - hypothetical protein, at 892,701 to 893,186
_00860
MPMX19_00861: MPMX19_00861 - hypothetical protein, at 893,183 to 893,566
_00861
Position (kb) 891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.555 kb on - strand, within MPMX19_00856 at 890.555 kb on - strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.908 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.087 kb on + strand at 891.088 kb on - strand at 891.166 kb on + strand at 891.166 kb on + strand at 891.167 kb on - strand at 891.266 kb on + strand at 891.267 kb on - strand at 891.426 kb on + strand at 891.427 kb on - strand at 891.427 kb on - strand at 891.427 kb on - strand at 891.449 kb on + strand at 891.449 kb on + strand at 891.449 kb on + strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.596 kb on - strand at 891.596 kb on - strand at 891.596 kb on - strand at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.709 kb on + strand at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 893.139 kb on + strand at 893.250 kb on + strand, within MPMX19_00861 at 893.250 kb on + strand, within MPMX19_00861 at 893.250 kb on + strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 890,554 + MPMX19_00856 0.62 -0.4 890,554 + MPMX19_00856 0.62 -1.7 890,554 + MPMX19_00856 0.62 +0.0 890,554 + MPMX19_00856 0.62 -0.1 890,554 + MPMX19_00856 0.62 -0.4 890,555 - MPMX19_00856 0.62 +1.4 890,555 - MPMX19_00856 0.62 +0.0 890,644 + MPMX19_00856 0.67 -0.6 890,644 + MPMX19_00856 0.67 +0.9 890,644 + MPMX19_00856 0.67 -2.1 890,645 - MPMX19_00856 0.67 -0.1 890,645 - MPMX19_00856 0.67 +0.4 890,645 - MPMX19_00856 0.67 -0.1 890,908 + MPMX19_00856 0.81 -0.4 891,052 + MPMX19_00856 0.88 -1.1 891,052 + MPMX19_00856 0.88 +1.4 891,052 + MPMX19_00856 0.88 +1.0 891,052 + MPMX19_00856 0.88 -0.4 891,052 + MPMX19_00856 0.88 -2.1 891,052 + MPMX19_00856 0.88 +0.6 891,052 + MPMX19_00856 0.88 -1.3 891,052 + MPMX19_00856 0.88 +0.9 891,052 + MPMX19_00856 0.88 +1.9 891,052 + MPMX19_00856 0.88 -0.6 891,052 + MPMX19_00856 0.88 -0.0 891,052 + MPMX19_00856 0.88 -0.6 891,052 + MPMX19_00856 0.88 -1.1 891,052 + MPMX19_00856 0.88 -0.7 891,053 - MPMX19_00856 0.88 -0.1 891,053 - MPMX19_00856 0.88 -1.9 891,053 - MPMX19_00856 0.88 -1.7 891,053 - MPMX19_00856 0.88 -1.4 891,053 - MPMX19_00856 0.88 -0.4 891,053 - MPMX19_00856 0.88 +0.3 891,053 - MPMX19_00856 0.88 -1.4 891,053 - MPMX19_00856 0.88 +0.3 891,053 - MPMX19_00856 0.88 -2.0 891,087 + +0.6 891,088 - -1.4 891,166 + -1.1 891,166 + -0.1 891,167 - -0.0 891,266 + -0.7 891,267 - -0.8 891,426 + +0.6 891,427 - -0.1 891,427 - +2.0 891,427 - -1.5 891,449 + +0.9 891,449 + -0.4 891,449 + +0.4 891,450 - -1.1 891,450 - -1.3 891,450 - -1.7 891,450 - -0.6 891,450 - -3.3 891,450 - +0.0 891,450 - -1.4 891,450 - +0.4 891,450 - +0.3 891,450 - -0.9 891,450 - -0.4 891,450 - +0.7 891,450 - -0.7 891,596 - -1.5 891,596 - -1.6 891,596 - -0.6 891,967 + MPMX19_00858 0.53 -1.7 891,967 + MPMX19_00858 0.53 -2.6 891,967 + MPMX19_00858 0.53 -0.7 891,967 + MPMX19_00858 0.53 -0.1 891,967 + MPMX19_00858 0.53 -2.0 891,967 + MPMX19_00858 0.53 -0.9 891,967 + MPMX19_00858 0.53 -1.7 891,967 + MPMX19_00858 0.53 -0.1 891,967 + MPMX19_00858 0.53 -1.5 891,967 + MPMX19_00858 0.53 -1.3 891,967 + MPMX19_00858 0.53 -1.6 891,967 + MPMX19_00858 0.53 -2.0 891,968 - MPMX19_00858 0.53 -0.1 891,968 - MPMX19_00858 0.53 -1.9 891,968 - MPMX19_00858 0.53 -1.9 891,968 - MPMX19_00858 0.53 -0.6 891,968 - MPMX19_00858 0.53 -1.6 891,968 - MPMX19_00858 0.53 -0.1 891,968 - MPMX19_00858 0.53 -2.0 891,968 - MPMX19_00858 0.53 -1.5 891,968 - MPMX19_00858 0.53 -1.3 891,968 - MPMX19_00858 0.53 -1.9 891,968 - MPMX19_00858 0.53 -2.1 892,660 + -2.9 892,660 + -2.9 892,660 + -2.7 892,660 + -2.9 892,660 + -1.9 892,660 + -0.4 892,660 + -1.6 892,660 + -0.8 892,661 - -2.3 892,661 - -0.9 892,661 - -0.6 892,661 - -1.1 892,661 - -0.1 892,661 - -1.0 892,661 - -1.6 892,662 + -1.1 892,662 + -1.3 892,662 + -1.6 892,662 + -0.4 892,662 + -1.6 892,662 + +0.4 892,662 + -1.9 892,662 + -3.1 892,662 + -1.3 892,662 + -1.7 892,662 + -2.9 892,662 + -1.0 892,662 + -4.0 892,662 + -1.7 892,662 + -1.1 892,662 + -0.3 892,662 + -1.6 892,662 + -2.3 892,662 + -0.6 892,662 + -1.3 892,662 + -1.1 892,662 + -1.9 892,662 + -1.4 892,662 + -0.6 892,662 + -2.6 892,663 - -2.6 892,663 - -0.5 892,663 - -1.6 892,663 - -0.6 892,663 - -1.0 892,663 - -2.1 892,663 - -1.9 892,663 - -0.8 892,663 - -1.1 892,663 - -1.6 892,663 - -2.8 892,663 - -2.3 892,663 - -0.1 892,663 - -2.3 892,663 - -1.4 892,663 - -1.1 892,663 - -1.9 892,663 - -2.0 892,663 - -1.2 892,663 - -1.7 892,663 - -2.0 892,663 - -1.1 892,663 - -1.5 892,663 - -2.9 892,709 + -0.4 892,783 + MPMX19_00860 0.17 -1.4 892,783 + MPMX19_00860 0.17 -0.7 892,783 + MPMX19_00860 0.17 +0.2 892,783 + MPMX19_00860 0.17 -1.5 892,784 - MPMX19_00860 0.17 -0.3 892,784 - MPMX19_00860 0.17 -0.3 892,784 - MPMX19_00860 0.17 +0.0 893,139 + -0.1 893,250 + MPMX19_00861 0.17 -0.7 893,250 + MPMX19_00861 0.17 +0.6 893,250 + MPMX19_00861 0.17 +0.2 893,251 - MPMX19_00861 0.18 -1.0 893,251 - MPMX19_00861 0.18 -0.6 893,251 - MPMX19_00861 0.18 -0.8 893,256 + MPMX19_00861 0.19 -1.5 893,256 + MPMX19_00861 0.19 -1.5 893,256 + MPMX19_00861 0.19 -0.9 893,256 + MPMX19_00861 0.19 +0.3 893,256 + MPMX19_00861 0.19 -0.3 893,256 + MPMX19_00861 0.19 +0.2 893,256 + MPMX19_00861 0.19 +0.3 893,256 + MPMX19_00861 0.19 -0.0 893,256 + MPMX19_00861 0.19 +0.0 893,256 + MPMX19_00861 0.19 +1.3 893,256 + MPMX19_00861 0.19 +0.3 893,256 + MPMX19_00861 0.19 -0.7 893,256 + MPMX19_00861 0.19 -0.6 893,256 + MPMX19_00861 0.19 -3.0 893,256 + MPMX19_00861 0.19 -1.4 893,256 + MPMX19_00861 0.19 -0.1 893,256 + MPMX19_00861 0.19 -0.7 893,256 + MPMX19_00861 0.19 -1.9 893,256 + MPMX19_00861 0.19 -0.8 893,256 + MPMX19_00861 0.19 -2.2 893,256 + MPMX19_00861 0.19 -2.1 893,256 + MPMX19_00861 0.19 -0.9 893,256 + MPMX19_00861 0.19 -1.5 893,256 + MPMX19_00861 0.19 -2.3 893,256 + MPMX19_00861 0.19 -1.1 893,256 + MPMX19_00861 0.19 -2.6 893,257 - MPMX19_00861 0.19 -1.9 893,257 - MPMX19_00861 0.19 -0.0 893,257 - MPMX19_00861 0.19 -1.4 893,257 - MPMX19_00861 0.19 -0.7 893,257 - MPMX19_00861 0.19 -0.5 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 -0.1 893,257 - MPMX19_00861 0.19 -1.2 893,257 - MPMX19_00861 0.19 -0.4 893,257 - MPMX19_00861 0.19 -0.8 893,257 - MPMX19_00861 0.19 +0.2 893,257 - MPMX19_00861 0.19 +0.3 893,257 - MPMX19_00861 0.19 +1.3 893,257 - MPMX19_00861 0.19 +0.8 893,257 - MPMX19_00861 0.19 -0.5 893,257 - MPMX19_00861 0.19 -0.2 893,257 - MPMX19_00861 0.19 -1.1 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 +1.0 893,257 - MPMX19_00861 0.19 +0.4 893,257 - MPMX19_00861 0.19 -1.1 893,257 - MPMX19_00861 0.19 -1.7 893,257 - MPMX19_00861 0.19 -1.2 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 +0.2 893,257 - MPMX19_00861 0.19 -0.5 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 +0.2 893,257 - MPMX19_00861 0.19 +0.1 893,257 - MPMX19_00861 0.19 +0.0 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 -0.7 893,257 - MPMX19_00861 0.19 +0.1
Or see this region's nucleotide sequence