Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00473 and MPMX19_00474 are separated by 193 nucleotides MPMX19_00474 and MPMX19_00475 are separated by 165 nucleotides MPMX19_00475 and MPMX19_00476 are separated by 3 nucleotides
MPMX19_00473: MPMX19_00473 - hypothetical protein, at 471,560 to 472,072
_00473
MPMX19_00474: MPMX19_00474 - N-ethylmaleimide reductase, at 472,266 to 473,396
_00474
MPMX19_00475: MPMX19_00475 - hypothetical protein, at 473,562 to 474,224
_00475
MPMX19_00476: MPMX19_00476 - Protein RarD, at 474,228 to 475,154
_00476
Position (kb) 472
473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 471.301 kb on + strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.746 kb on + strand, within MPMX19_00473 at 471.747 kb on - strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 472.087 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.324 kb on + strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.498 kb on + strand, within MPMX19_00474 at 472.498 kb on + strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 473.167 kb on + strand, within MPMX19_00474 at 473.168 kb on - strand, within MPMX19_00474 at 473.168 kb on - strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.236 kb on + strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.237 kb on - strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.239 kb on + strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.240 kb on - strand, within MPMX19_00474 at 473.405 kb on + strand at 473.405 kb on + strand at 473.406 kb on - strand at 473.406 kb on - strand at 473.422 kb on + strand at 473.422 kb on + strand at 473.422 kb on + strand at 473.423 kb on - strand at 473.423 kb on - strand at 473.450 kb on - strand at 473.461 kb on + strand at 473.462 kb on - strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.491 kb on + strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.492 kb on - strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.495 kb on + strand at 473.496 kb on - strand at 473.496 kb on - strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.503 kb on + strand at 473.504 kb on - strand at 473.504 kb on - strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.507 kb on + strand at 473.508 kb on - strand at 473.508 kb on - strand at 473.510 kb on + strand at 473.511 kb on - strand at 473.522 kb on + strand at 473.522 kb on + strand at 473.523 kb on - strand at 473.772 kb on + strand, within MPMX19_00475 at 473.772 kb on + strand, within MPMX19_00475 at 473.772 kb on + strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.773 kb on - strand, within MPMX19_00475 at 473.817 kb on + strand, within MPMX19_00475 at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.229 kb on + strand at 474.230 kb on - strand at 474.230 kb on - strand at 474.230 kb on - strand at 474.355 kb on + strand, within MPMX19_00476 at 474.355 kb on + strand, within MPMX19_00476 at 474.355 kb on + strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476 at 474.356 kb on - strand, within MPMX19_00476
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 471,301 + -1.3 471,302 - +0.5 471,302 - +0.3 471,302 - -0.2 471,302 - -0.5 471,490 + -1.3 471,490 + -1.6 471,490 + +0.8 471,490 + -0.1 471,490 + -0.5 471,490 + -0.1 471,491 - +0.5 471,491 - -0.7 471,491 - +0.2 471,491 - +0.1 471,491 - -1.1 471,491 - +0.5 471,491 - -0.8 471,491 - -0.1 471,491 - -1.1 471,737 + MPMX19_00473 0.35 +0.5 471,737 + MPMX19_00473 0.35 +0.2 471,737 + MPMX19_00473 0.35 -0.1 471,738 - MPMX19_00473 0.35 +0.5 471,738 - MPMX19_00473 0.35 -0.5 471,738 - MPMX19_00473 0.35 +0.1 471,746 + MPMX19_00473 0.36 -1.0 471,747 - MPMX19_00473 0.36 +1.2 471,755 + MPMX19_00473 0.38 -2.1 471,755 + MPMX19_00473 0.38 +0.3 471,755 + MPMX19_00473 0.38 +0.5 471,755 + MPMX19_00473 0.38 -1.6 471,755 + MPMX19_00473 0.38 +1.0 471,755 + MPMX19_00473 0.38 -1.1 471,756 - MPMX19_00473 0.38 +0.6 471,756 - MPMX19_00473 0.38 -0.6 471,756 - MPMX19_00473 0.38 -0.7 472,087 + -1.1 472,303 + -0.5 472,303 + -0.8 472,303 + -1.3 472,304 - -1.7 472,304 - +0.0 472,304 - -0.1 472,324 + -1.3 472,325 - -1.0 472,325 - +0.4 472,325 - -0.6 472,327 + +0.8 472,327 + +0.5 472,327 + +0.4 472,327 + -0.4 472,327 + -0.4 472,327 + +1.0 472,327 + -1.3 472,327 + +0.2 472,327 + -1.7 472,327 + +0.8 472,327 + +0.6 472,327 + -0.5 472,327 + -0.7 472,327 + +0.3 472,327 + +0.1 472,327 + +0.1 472,327 + -1.8 472,327 + +0.3 472,327 + +1.0 472,327 + +0.3 472,327 + -3.1 472,327 + -0.0 472,327 + +0.1 472,327 + -0.4 472,327 + -1.0 472,327 + -0.1 472,327 + -0.6 472,327 + -0.3 472,328 - +1.1 472,328 - -1.0 472,328 - +0.3 472,328 - +0.6 472,328 - -0.5 472,328 - +1.3 472,328 - +0.4 472,328 - +0.4 472,328 - -0.4 472,328 - -1.3 472,328 - -1.4 472,328 - +0.4 472,328 - -0.5 472,328 - -0.8 472,328 - -1.2 472,328 - -0.2 472,328 - +0.4 472,328 - -1.8 472,328 - +0.5 472,328 - -0.5 472,328 - -1.7 472,328 - -0.3 472,328 - -0.8 472,328 - +0.3 472,328 - +0.0 472,328 - +0.3 472,328 - -1.1 472,328 - -0.8 472,328 - -0.4 472,328 - +0.3 472,498 + MPMX19_00474 0.21 +0.7 472,498 + MPMX19_00474 0.21 +0.7 472,499 - MPMX19_00474 0.21 -0.4 472,499 - MPMX19_00474 0.21 +0.7 472,499 - MPMX19_00474 0.21 -0.4 472,499 - MPMX19_00474 0.21 -0.9 472,499 - MPMX19_00474 0.21 +0.9 472,585 + MPMX19_00474 0.28 -1.1 472,585 + MPMX19_00474 0.28 +1.1 472,585 + MPMX19_00474 0.28 -1.0 472,585 + MPMX19_00474 0.28 -1.5 472,585 + MPMX19_00474 0.28 +0.3 472,585 + MPMX19_00474 0.28 -1.3 472,585 + MPMX19_00474 0.28 -2.2 472,585 + MPMX19_00474 0.28 -1.5 472,585 + MPMX19_00474 0.28 -1.3 472,586 - MPMX19_00474 0.28 -0.2 472,586 - MPMX19_00474 0.28 -0.3 472,586 - MPMX19_00474 0.28 +1.2 472,586 - MPMX19_00474 0.28 -0.2 472,586 - MPMX19_00474 0.28 -1.1 472,586 - MPMX19_00474 0.28 +0.1 472,586 - MPMX19_00474 0.28 +0.2 472,774 + MPMX19_00474 0.45 -0.4 472,774 + MPMX19_00474 0.45 +0.1 472,774 + MPMX19_00474 0.45 +0.8 472,775 - MPMX19_00474 0.45 +0.1 472,775 - MPMX19_00474 0.45 -1.1 472,775 - MPMX19_00474 0.45 +0.1 472,775 - MPMX19_00474 0.45 +0.5 472,775 - MPMX19_00474 0.45 -2.1 472,825 + MPMX19_00474 0.49 -1.3 472,825 + MPMX19_00474 0.49 -0.5 472,825 + MPMX19_00474 0.49 -3.1 472,825 + MPMX19_00474 0.49 -0.1 472,826 - MPMX19_00474 0.50 -2.4 472,826 - MPMX19_00474 0.50 +0.1 472,975 + MPMX19_00474 0.63 -2.8 472,975 + MPMX19_00474 0.63 -1.2 472,975 + MPMX19_00474 0.63 -0.1 472,975 + MPMX19_00474 0.63 -2.1 472,975 + MPMX19_00474 0.63 -0.3 472,975 + MPMX19_00474 0.63 +0.0 472,975 + MPMX19_00474 0.63 -1.7 472,975 + MPMX19_00474 0.63 -0.7 472,975 + MPMX19_00474 0.63 -2.2 472,975 + MPMX19_00474 0.63 -1.1 472,975 + MPMX19_00474 0.63 -0.7 472,975 + MPMX19_00474 0.63 +1.3 472,976 - MPMX19_00474 0.63 -1.0 472,976 - MPMX19_00474 0.63 +0.9 472,976 - MPMX19_00474 0.63 -0.3 472,976 - MPMX19_00474 0.63 -1.5 472,976 - MPMX19_00474 0.63 +0.1 472,976 - MPMX19_00474 0.63 -0.5 472,976 - MPMX19_00474 0.63 -0.7 472,976 - MPMX19_00474 0.63 +0.9 472,976 - MPMX19_00474 0.63 -0.5 472,976 - MPMX19_00474 0.63 +0.6 472,976 - MPMX19_00474 0.63 -0.9 472,976 - MPMX19_00474 0.63 -0.2 473,167 + MPMX19_00474 0.80 +0.7 473,168 - MPMX19_00474 0.80 +1.1 473,168 - MPMX19_00474 0.80 -1.1 473,236 + MPMX19_00474 0.86 -1.8 473,236 + MPMX19_00474 0.86 -0.0 473,236 + MPMX19_00474 0.86 -2.0 473,236 + MPMX19_00474 0.86 -0.3 473,236 + MPMX19_00474 0.86 +0.3 473,236 + MPMX19_00474 0.86 -0.8 473,237 - MPMX19_00474 0.86 -0.8 473,237 - MPMX19_00474 0.86 -2.2 473,237 - MPMX19_00474 0.86 -0.3 473,237 - MPMX19_00474 0.86 -0.1 473,237 - MPMX19_00474 0.86 -0.7 473,237 - MPMX19_00474 0.86 -0.1 473,237 - MPMX19_00474 0.86 -2.1 473,237 - MPMX19_00474 0.86 -0.1 473,237 - MPMX19_00474 0.86 +0.2 473,239 + MPMX19_00474 0.86 -0.8 473,239 + MPMX19_00474 0.86 -2.0 473,239 + MPMX19_00474 0.86 -0.6 473,239 + MPMX19_00474 0.86 +1.0 473,240 - MPMX19_00474 0.86 -0.7 473,240 - MPMX19_00474 0.86 -0.1 473,240 - MPMX19_00474 0.86 -0.4 473,240 - MPMX19_00474 0.86 -1.1 473,405 + -0.1 473,405 + -0.6 473,406 - -0.8 473,406 - -1.8 473,422 + +0.3 473,422 + -2.2 473,422 + -0.8 473,423 - -0.7 473,423 - -1.6 473,450 - -1.3 473,461 + -1.5 473,462 - +0.2 473,491 + +0.3 473,491 + +0.8 473,491 + +0.4 473,491 + +0.4 473,491 + -1.0 473,491 + +0.9 473,491 + -1.5 473,491 + +0.5 473,492 - -1.3 473,492 - -0.8 473,492 - -0.9 473,492 - -2.3 473,492 - +0.7 473,492 - +0.3 473,492 - -0.4 473,495 + +0.7 473,495 + -0.7 473,495 + +1.0 473,495 + +0.5 473,495 + -0.4 473,495 + +0.2 473,495 + -1.2 473,495 + -0.1 473,496 - +1.5 473,496 - -0.4 473,503 + -1.3 473,503 + -0.4 473,503 + +1.3 473,503 + -0.7 473,503 + -0.1 473,504 - -0.8 473,504 - +0.4 473,507 + -0.3 473,507 + +0.6 473,507 + -0.2 473,507 + -1.3 473,507 + -1.8 473,507 + -0.1 473,508 - -2.6 473,508 - -0.1 473,510 + -1.7 473,511 - +0.5 473,522 + -0.1 473,522 + -0.9 473,523 - +0.6 473,772 + MPMX19_00475 0.32 -0.1 473,772 + MPMX19_00475 0.32 -1.0 473,772 + MPMX19_00475 0.32 +0.8 473,773 - MPMX19_00475 0.32 -0.8 473,773 - MPMX19_00475 0.32 -0.5 473,773 - MPMX19_00475 0.32 +1.1 473,773 - MPMX19_00475 0.32 +0.0 473,817 + MPMX19_00475 0.38 +0.5 474,229 + -1.7 474,229 + -1.8 474,229 + -1.3 474,229 + +1.5 474,229 + +1.0 474,230 - +0.4 474,230 - -0.6 474,230 - -1.1 474,355 + MPMX19_00476 0.14 -2.8 474,355 + MPMX19_00476 0.14 +0.6 474,355 + MPMX19_00476 0.14 +0.8 474,356 - MPMX19_00476 0.14 +0.7 474,356 - MPMX19_00476 0.14 -0.2 474,356 - MPMX19_00476 0.14 +0.3 474,356 - MPMX19_00476 0.14 +0.7 474,356 - MPMX19_00476 0.14 -0.9 474,356 - MPMX19_00476 0.14 -0.5 474,356 - MPMX19_00476 0.14 -1.5
Or see this region's nucleotide sequence