Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00333 and MPMX19_00334 are separated by 32 nucleotides MPMX19_00334 and MPMX19_00335 are separated by 39 nucleotides MPMX19_00335 and MPMX19_00336 are separated by 342 nucleotides
MPMX19_00333: MPMX19_00333 - Acetylglutamate kinase, at 335,681 to 336,580
_00333
MPMX19_00334: MPMX19_00334 - hypothetical protein, at 336,613 to 336,897
_00334
MPMX19_00335: MPMX19_00335 - Magnesium transport protein CorA, at 336,937 to 337,920
_00335
MPMX19_00336: MPMX19_00336 - Phosphomethylpyrimidine synthase, at 338,263 to 339,990
_00336
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 337.430 kb on - strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.918 kb on + strand at 337.918 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.034 kb on + strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.035 kb on - strand at 338.102 kb on + strand at 338.205 kb on + strand at 338.205 kb on + strand at 338.205 kb on + strand at 338.206 kb on - strand at 338.206 kb on - strand at 338.206 kb on - strand at 338.268 kb on + strand at 338.268 kb on + strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.269 kb on - strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.416 kb on + strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.417 kb on - strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.434 kb on + strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.578 kb on + strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.579 kb on - strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.614 kb on + strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336 at 338.615 kb on - strand, within MPMX19_00336
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 336,721 + MPMX19_00334 0.38 -0.1 336,721 + MPMX19_00334 0.38 -0.5 336,721 + MPMX19_00334 0.38 +1.2 336,721 + MPMX19_00334 0.38 +1.7 336,722 - MPMX19_00334 0.38 -0.1 336,722 - MPMX19_00334 0.38 -0.5 336,722 - MPMX19_00334 0.38 +0.5 336,722 - MPMX19_00334 0.38 -0.6 336,895 + -0.3 336,895 + -0.8 336,895 + -0.8 336,895 + +0.3 336,895 + -1.7 336,895 + -1.1 336,895 + +1.4 336,895 + -1.5 336,895 + +0.5 336,896 - +0.4 336,896 - +1.2 336,896 - -1.3 336,896 - +0.7 337,430 - MPMX19_00335 0.50 -1.3 337,654 + MPMX19_00335 0.73 -0.1 337,654 + MPMX19_00335 0.73 -0.5 337,654 + MPMX19_00335 0.73 -0.1 337,655 - MPMX19_00335 0.73 -1.9 337,655 - MPMX19_00335 0.73 -2.1 337,894 + -0.9 337,894 + +1.7 337,894 + +1.2 337,894 + -1.5 337,894 + -1.1 337,894 + -0.5 337,895 - +0.4 337,895 - +0.2 337,895 - -0.1 337,895 - +0.8 337,895 - +0.5 337,895 - -0.5 337,895 - -0.1 337,895 - -0.1 337,895 - -1.0 337,918 + +0.8 337,918 + +0.6 338,034 + +0.5 338,034 + -0.8 338,034 + +0.4 338,034 + -0.9 338,034 + +0.5 338,034 + +0.2 338,034 + -0.7 338,035 - -0.7 338,035 - +0.9 338,035 - -1.2 338,035 - -0.1 338,035 - +0.3 338,035 - -0.1 338,102 + -2.5 338,205 + -0.4 338,205 + -0.4 338,205 + -0.8 338,206 - -1.6 338,206 - +0.6 338,206 - +0.9 338,268 + -0.8 338,268 + -0.4 338,269 - -0.8 338,269 - -0.3 338,269 - -0.7 338,269 - -1.1 338,269 - +2.1 338,269 - -0.7 338,416 + -1.5 338,416 + -0.1 338,416 + +0.0 338,416 + -0.8 338,416 + -0.5 338,416 + +0.3 338,416 + +0.2 338,416 + -0.5 338,417 - -1.1 338,417 - -0.1 338,417 - -0.6 338,417 - -0.0 338,417 - +0.4 338,417 - -1.2 338,417 - +0.2 338,417 - +0.8 338,417 - -0.5 338,434 + -2.4 338,434 + -0.5 338,434 + -0.6 338,434 + +0.2 338,435 - -0.1 338,435 - -0.4 338,578 + MPMX19_00336 0.18 -0.1 338,579 - MPMX19_00336 0.18 +0.5 338,579 - MPMX19_00336 0.18 +0.0 338,579 - MPMX19_00336 0.18 -1.6 338,579 - MPMX19_00336 0.18 -0.5 338,579 - MPMX19_00336 0.18 -0.5 338,614 + MPMX19_00336 0.20 +0.7 338,614 + MPMX19_00336 0.20 +1.3 338,614 + MPMX19_00336 0.20 -0.2 338,614 + MPMX19_00336 0.20 -0.2 338,614 + MPMX19_00336 0.20 -0.5 338,614 + MPMX19_00336 0.20 +1.1 338,614 + MPMX19_00336 0.20 +0.6 338,614 + MPMX19_00336 0.20 -1.9 338,614 + MPMX19_00336 0.20 +0.8 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 +0.4 338,614 + MPMX19_00336 0.20 -1.1 338,614 + MPMX19_00336 0.20 -1.4 338,614 + MPMX19_00336 0.20 -1.0 338,614 + MPMX19_00336 0.20 -0.3 338,614 + MPMX19_00336 0.20 +0.2 338,614 + MPMX19_00336 0.20 +1.9 338,614 + MPMX19_00336 0.20 -1.8 338,615 - MPMX19_00336 0.20 -0.5 338,615 - MPMX19_00336 0.20 -1.1 338,615 - MPMX19_00336 0.20 +0.1 338,615 - MPMX19_00336 0.20 -1.1 338,615 - MPMX19_00336 0.20 +0.0 338,615 - MPMX19_00336 0.20 -1.1 338,615 - MPMX19_00336 0.20 -0.6 338,615 - MPMX19_00336 0.20 -1.3 338,615 - MPMX19_00336 0.20 -0.8 338,615 - MPMX19_00336 0.20 +0.1 338,615 - MPMX19_00336 0.20 -0.4 338,615 - MPMX19_00336 0.20 -2.2 338,615 - MPMX19_00336 0.20 -2.6 338,615 - MPMX19_00336 0.20 -0.1
Or see this region's nucleotide sequence