Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00318 and MPMX19_00319 are separated by 31 nucleotides MPMX19_00319 and MPMX19_00320 are separated by 146 nucleotides MPMX19_00320 and MPMX19_00321 are separated by 25 nucleotides
MPMX19_00318: MPMX19_00318 - hypothetical protein, at 322,552 to 323,880
_00318
MPMX19_00319: MPMX19_00319 - hypothetical protein, at 323,912 to 324,544
_00319
MPMX19_00320: MPMX19_00320 - hypothetical protein, at 324,691 to 325,335
_00320
MPMX19_00321: MPMX19_00321 - hypothetical protein, at 325,361 to 326,713
_00321
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 323.070 kb on + strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.071 kb on - strand, within MPMX19_00318 at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.793 kb on + strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.794 kb on - strand at 323.816 kb on - strand at 323.816 kb on - strand at 323.912 kb on - strand at 324.194 kb on + strand, within MPMX19_00319 at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.485 kb on + strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.486 kb on - strand at 324.487 kb on + strand at 324.488 kb on - strand at 324.488 kb on - strand at 324.586 kb on + strand at 324.586 kb on + strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.587 kb on - strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.600 kb on + strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.601 kb on - strand at 324.652 kb on + strand at 324.653 kb on - strand at 324.653 kb on - strand at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.195 kb on + strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.196 kb on - strand, within MPMX19_00320 at 325.288 kb on + strand at 325.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 323,070 + MPMX19_00318 0.39 -0.3 323,071 - MPMX19_00318 0.39 +1.2 323,071 - MPMX19_00318 0.39 -0.0 323,793 + -1.3 323,793 + -1.3 323,793 + +0.1 323,793 + +0.2 323,793 + +0.1 323,793 + +0.4 323,793 + -0.5 323,793 + -1.7 323,793 + -1.5 323,793 + -0.3 323,793 + -1.6 323,794 - +1.0 323,794 - -0.1 323,794 - -1.6 323,794 - -0.5 323,794 - -0.5 323,794 - +0.4 323,794 - +1.0 323,794 - +1.3 323,794 - -0.8 323,794 - +0.8 323,794 - +1.2 323,794 - +1.0 323,794 - +0.1 323,816 - -2.3 323,816 - -1.0 323,912 - +0.7 324,194 + MPMX19_00319 0.45 -1.1 324,485 + -0.1 324,485 + +1.2 324,485 + +0.2 324,485 + -1.0 324,485 + -0.0 324,485 + -0.0 324,485 + +0.5 324,485 + -0.3 324,485 + -0.2 324,485 + -1.1 324,485 + -1.6 324,485 + -0.5 324,486 - -0.0 324,486 - -1.4 324,486 - -0.4 324,486 - -0.8 324,486 - -0.2 324,486 - -0.0 324,486 - -0.1 324,486 - +1.2 324,486 - -0.0 324,486 - +0.4 324,486 - -1.8 324,486 - +0.7 324,486 - -1.7 324,487 + +0.5 324,488 - +0.2 324,488 - -1.0 324,586 + -0.0 324,586 + -2.5 324,587 - -0.2 324,587 - +1.0 324,587 - +0.2 324,600 + +0.1 324,600 + -0.2 324,600 + -1.1 324,600 + +1.1 324,600 + -1.5 324,600 + -0.5 324,601 - +0.5 324,601 - +0.5 324,601 - -1.6 324,601 - +0.7 324,601 - -1.1 324,601 - -1.0 324,601 - -0.1 324,601 - +0.0 324,601 - -0.5 324,601 - +0.7 324,652 + -1.7 324,653 - -0.6 324,653 - +0.6 325,195 + MPMX19_00320 0.78 -0.9 325,195 + MPMX19_00320 0.78 -2.8 325,195 + MPMX19_00320 0.78 +0.5 325,195 + MPMX19_00320 0.78 -1.4 325,196 - MPMX19_00320 0.78 -0.3 325,196 - MPMX19_00320 0.78 +0.9 325,288 + -0.4 325,289 - -0.9
Or see this region's nucleotide sequence