Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00312 and MPMX19_00313 are separated by 47 nucleotides MPMX19_00313 and MPMX19_00314 are separated by 22 nucleotides MPMX19_00314 and MPMX19_00315 are separated by 138 nucleotides
MPMX19_00312: MPMX19_00312 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 315,920 to 316,945
_00312
MPMX19_00313: MPMX19_00313 - hypothetical protein, at 316,993 to 317,562
_00313
MPMX19_00314: MPMX19_00314 - Succinyl-diaminopimelate desuccinylase, at 317,585 to 318,733
_00314
MPMX19_00315: MPMX19_00315 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 318,872 to 319,714
_00315
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.944 kb on - strand at 316.944 kb on - strand at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.111 kb on + strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.112 kb on - strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.204 kb on + strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.205 kb on - strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.237 kb on + strand, within MPMX19_00313 at 317.238 kb on - strand, within MPMX19_00313 at 317.238 kb on - strand, within MPMX19_00313 at 317.238 kb on - strand, within MPMX19_00313 at 317.238 kb on - strand, within MPMX19_00313 at 317.258 kb on + strand, within MPMX19_00313 at 317.259 kb on - strand, within MPMX19_00313 at 317.287 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.330 kb on + strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.331 kb on - strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.414 kb on + strand, within MPMX19_00313 at 317.415 kb on - strand, within MPMX19_00313 at 317.415 kb on - strand, within MPMX19_00313 at 317.415 kb on - strand, within MPMX19_00313 at 317.415 kb on - strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.441 kb on + strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 317.442 kb on - strand, within MPMX19_00313 at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand at 318.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 316,944 - +1.0 316,944 - -1.5 317,111 + MPMX19_00313 0.21 -1.0 317,111 + MPMX19_00313 0.21 +1.8 317,111 + MPMX19_00313 0.21 +0.2 317,111 + MPMX19_00313 0.21 -0.5 317,111 + MPMX19_00313 0.21 -0.0 317,111 + MPMX19_00313 0.21 -1.2 317,111 + MPMX19_00313 0.21 +0.5 317,111 + MPMX19_00313 0.21 +0.0 317,112 - MPMX19_00313 0.21 +0.6 317,112 - MPMX19_00313 0.21 -0.6 317,112 - MPMX19_00313 0.21 +0.3 317,112 - MPMX19_00313 0.21 -1.3 317,112 - MPMX19_00313 0.21 -0.5 317,112 - MPMX19_00313 0.21 -1.5 317,112 - MPMX19_00313 0.21 -0.5 317,112 - MPMX19_00313 0.21 -0.4 317,112 - MPMX19_00313 0.21 -1.6 317,204 + MPMX19_00313 0.37 +0.4 317,204 + MPMX19_00313 0.37 +0.4 317,204 + MPMX19_00313 0.37 +0.2 317,204 + MPMX19_00313 0.37 -0.0 317,204 + MPMX19_00313 0.37 -0.4 317,204 + MPMX19_00313 0.37 +0.7 317,204 + MPMX19_00313 0.37 +0.3 317,204 + MPMX19_00313 0.37 +0.4 317,204 + MPMX19_00313 0.37 +0.1 317,204 + MPMX19_00313 0.37 -0.6 317,204 + MPMX19_00313 0.37 -0.3 317,204 + MPMX19_00313 0.37 -0.3 317,204 + MPMX19_00313 0.37 -0.4 317,204 + MPMX19_00313 0.37 +0.1 317,204 + MPMX19_00313 0.37 +0.1 317,204 + MPMX19_00313 0.37 +0.8 317,204 + MPMX19_00313 0.37 +0.1 317,204 + MPMX19_00313 0.37 -1.2 317,204 + MPMX19_00313 0.37 +0.1 317,204 + MPMX19_00313 0.37 -0.2 317,205 - MPMX19_00313 0.37 +0.7 317,205 - MPMX19_00313 0.37 -0.2 317,205 - MPMX19_00313 0.37 -2.3 317,205 - MPMX19_00313 0.37 -0.8 317,205 - MPMX19_00313 0.37 -1.2 317,205 - MPMX19_00313 0.37 +0.1 317,205 - MPMX19_00313 0.37 +0.4 317,205 - MPMX19_00313 0.37 -0.3 317,205 - MPMX19_00313 0.37 -0.0 317,205 - MPMX19_00313 0.37 +0.3 317,205 - MPMX19_00313 0.37 +0.5 317,205 - MPMX19_00313 0.37 +0.1 317,205 - MPMX19_00313 0.37 -0.8 317,205 - MPMX19_00313 0.37 +1.2 317,205 - MPMX19_00313 0.37 +0.5 317,205 - MPMX19_00313 0.37 -1.9 317,205 - MPMX19_00313 0.37 +0.2 317,205 - MPMX19_00313 0.37 -0.3 317,205 - MPMX19_00313 0.37 -0.0 317,237 + MPMX19_00313 0.43 -0.2 317,237 + MPMX19_00313 0.43 -1.9 317,237 + MPMX19_00313 0.43 -0.8 317,237 + MPMX19_00313 0.43 -1.2 317,237 + MPMX19_00313 0.43 +1.2 317,237 + MPMX19_00313 0.43 -0.5 317,237 + MPMX19_00313 0.43 -0.2 317,237 + MPMX19_00313 0.43 -2.6 317,237 + MPMX19_00313 0.43 +0.8 317,238 - MPMX19_00313 0.43 -0.0 317,238 - MPMX19_00313 0.43 -0.5 317,238 - MPMX19_00313 0.43 -0.1 317,238 - MPMX19_00313 0.43 -1.0 317,258 + MPMX19_00313 0.46 -0.9 317,259 - MPMX19_00313 0.47 -1.2 317,287 + MPMX19_00313 0.52 +1.1 317,330 + MPMX19_00313 0.59 -0.4 317,330 + MPMX19_00313 0.59 +2.3 317,330 + MPMX19_00313 0.59 -1.3 317,330 + MPMX19_00313 0.59 +0.5 317,330 + MPMX19_00313 0.59 -2.2 317,330 + MPMX19_00313 0.59 +0.7 317,331 - MPMX19_00313 0.59 -0.3 317,331 - MPMX19_00313 0.59 -1.4 317,331 - MPMX19_00313 0.59 -0.9 317,331 - MPMX19_00313 0.59 -1.5 317,331 - MPMX19_00313 0.59 -0.2 317,331 - MPMX19_00313 0.59 +0.5 317,331 - MPMX19_00313 0.59 +0.5 317,331 - MPMX19_00313 0.59 +0.5 317,414 + MPMX19_00313 0.74 -0.4 317,414 + MPMX19_00313 0.74 -0.5 317,414 + MPMX19_00313 0.74 -0.6 317,414 + MPMX19_00313 0.74 -0.4 317,414 + MPMX19_00313 0.74 -0.5 317,414 + MPMX19_00313 0.74 -1.5 317,414 + MPMX19_00313 0.74 -1.5 317,415 - MPMX19_00313 0.74 +0.8 317,415 - MPMX19_00313 0.74 -0.0 317,415 - MPMX19_00313 0.74 -0.2 317,415 - MPMX19_00313 0.74 +0.4 317,441 + MPMX19_00313 0.79 +1.5 317,441 + MPMX19_00313 0.79 +0.5 317,441 + MPMX19_00313 0.79 -0.2 317,441 + MPMX19_00313 0.79 -0.3 317,441 + MPMX19_00313 0.79 +0.8 317,441 + MPMX19_00313 0.79 +0.3 317,442 - MPMX19_00313 0.79 +0.6 317,442 - MPMX19_00313 0.79 -0.2 317,442 - MPMX19_00313 0.79 -0.3 317,442 - MPMX19_00313 0.79 -1.5 317,442 - MPMX19_00313 0.79 -0.5 317,442 - MPMX19_00313 0.79 -2.0 318,818 - +0.3 318,818 - -0.5 318,818 - +0.2 318,818 - -1.6 318,818 - -1.0 318,818 - -0.0 318,818 - +0.3 318,818 - +0.8 318,818 - -1.5 318,818 - -2.0 318,818 - -0.5 318,818 - +1.0
Or see this region's nucleotide sequence