Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00259 and MPMX19_00260 are separated by 346 nucleotides MPMX19_00260 and MPMX19_00261 overlap by 4 nucleotides MPMX19_00261 and MPMX19_00262 are separated by 120 nucleotides
MPMX19_00259: MPMX19_00259 - hypothetical protein, at 260,314 to 262,377
_00259
MPMX19_00260: MPMX19_00260 - Hydrogen cyanide synthase subunit HcnC, at 262,724 to 263,905
_00260
MPMX19_00261: MPMX19_00261 - hypothetical protein, at 263,902 to 264,123
_00261
MPMX19_00262: MPMX19_00262 - Thiazole synthase, at 264,244 to 265,041
_00262
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.770 kb on + strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 261.771 kb on - strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.040 kb on + strand, within MPMX19_00259 at 262.041 kb on - strand, within MPMX19_00259 at 262.454 kb on + strand at 262.455 kb on - strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.477 kb on + strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.517 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.625 kb on + strand at 262.626 kb on - strand at 262.626 kb on - strand at 262.626 kb on - strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.637 kb on + strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.638 kb on - strand at 262.699 kb on + strand at 262.699 kb on + strand at 262.751 kb on + strand at 262.751 kb on + strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 262.752 kb on - strand at 263.445 kb on + strand, within MPMX19_00260 at 263.446 kb on - strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.531 kb on + strand, within MPMX19_00260 at 263.532 kb on - strand, within MPMX19_00260 at 263.532 kb on - strand, within MPMX19_00260 at 264.661 kb on + strand, within MPMX19_00262 at 264.661 kb on + strand, within MPMX19_00262 at 264.661 kb on + strand, within MPMX19_00262 at 264.662 kb on - strand, within MPMX19_00262 at 264.662 kb on - strand, within MPMX19_00262
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 261,770 + MPMX19_00259 0.71 +0.1 261,770 + MPMX19_00259 0.71 +0.5 261,770 + MPMX19_00259 0.71 +0.3 261,770 + MPMX19_00259 0.71 +0.2 261,771 - MPMX19_00259 0.71 -0.3 261,771 - MPMX19_00259 0.71 -2.1 261,771 - MPMX19_00259 0.71 -0.6 261,771 - MPMX19_00259 0.71 -1.2 262,040 + MPMX19_00259 0.84 +0.6 262,040 + MPMX19_00259 0.84 -0.7 262,040 + MPMX19_00259 0.84 +0.8 262,041 - MPMX19_00259 0.84 -1.0 262,454 + -0.6 262,455 - -2.2 262,477 + +1.3 262,477 + +0.6 262,477 + -0.9 262,477 + -0.2 262,477 + -0.4 262,477 + -0.1 262,477 + -0.2 262,477 + +0.6 262,477 + -1.0 262,477 + +0.7 262,478 - -0.1 262,478 - -0.1 262,478 - +0.3 262,478 - -0.1 262,478 - +0.7 262,478 - -1.7 262,478 - +0.9 262,478 - -0.4 262,517 + +0.7 262,625 + +0.6 262,625 + -1.4 262,625 + +0.3 262,625 + -1.5 262,625 + -1.7 262,625 + -1.6 262,625 + +1.1 262,626 - +0.6 262,626 - -1.2 262,626 - -0.7 262,637 + -0.4 262,637 + -1.0 262,637 + -0.8 262,637 + -0.6 262,637 + -2.0 262,637 + -0.8 262,637 + -0.3 262,638 - +3.2 262,638 - -0.3 262,638 - -0.8 262,638 - +1.8 262,638 - -0.2 262,638 - +0.0 262,699 + -1.2 262,699 + +0.0 262,751 + -1.7 262,751 + +0.6 262,752 - +0.4 262,752 - -1.2 262,752 - -0.6 262,752 - -0.7 262,752 - +0.6 263,445 + MPMX19_00260 0.61 -1.2 263,446 - MPMX19_00260 0.61 -0.7 263,531 + MPMX19_00260 0.68 -1.4 263,531 + MPMX19_00260 0.68 -0.6 263,531 + MPMX19_00260 0.68 +1.6 263,531 + MPMX19_00260 0.68 -0.9 263,532 - MPMX19_00260 0.68 +0.0 263,532 - MPMX19_00260 0.68 -0.4 264,661 + MPMX19_00262 0.52 -0.6 264,661 + MPMX19_00262 0.52 -0.7 264,661 + MPMX19_00262 0.52 -1.7 264,662 - MPMX19_00262 0.52 -2.7 264,662 - MPMX19_00262 0.52 -1.2
Or see this region's nucleotide sequence