Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00256 and MPMX19_00257 are separated by 118 nucleotides MPMX19_00257 and MPMX19_00258 are separated by 121 nucleotides MPMX19_00258 and MPMX19_00259 are separated by 20 nucleotides
MPMX19_00256: MPMX19_00256 - hypothetical protein, at 257,439 to 257,933
_00256
MPMX19_00257: MPMX19_00257 - hypothetical protein, at 258,052 to 258,627
_00257
MPMX19_00258: MPMX19_00258 - Protein ImuB, at 258,749 to 260,293
_00258
MPMX19_00259: MPMX19_00259 - hypothetical protein, at 260,314 to 262,377
_00259
Position (kb) 258
259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.973 kb on - strand at 258.017 kb on + strand at 258.017 kb on + strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.707 kb on - strand at 258.729 kb on - strand at 258.895 kb on - strand at 259.053 kb on - strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.186 kb on + strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.187 kb on - strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.189 kb on + strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.190 kb on - strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.243 kb on + strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.244 kb on - strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.351 kb on + strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.352 kb on - strand at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.876 kb on + strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.877 kb on - strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.927 kb on + strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.928 kb on - strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.987 kb on + strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 260.988 kb on - strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.005 kb on + strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.006 kb on - strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.023 kb on + strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.024 kb on - strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.266 kb on + strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259 at 261.267 kb on - strand, within MPMX19_00259
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 257,749 - MPMX19_00256 0.63 +0.9 257,749 - MPMX19_00256 0.63 -0.4 257,749 - MPMX19_00256 0.63 -0.5 257,749 - MPMX19_00256 0.63 -1.4 257,749 - MPMX19_00256 0.63 +0.1 257,749 - MPMX19_00256 0.63 -0.6 257,973 - -2.5 258,017 + +0.5 258,017 + -0.1 258,018 - -0.4 258,018 - +0.7 258,018 - +0.6 258,482 + MPMX19_00257 0.75 +0.4 258,482 + MPMX19_00257 0.75 +0.0 258,482 + MPMX19_00257 0.75 -0.5 258,482 + MPMX19_00257 0.75 -0.3 258,482 + MPMX19_00257 0.75 -0.8 258,482 + MPMX19_00257 0.75 +0.6 258,483 - MPMX19_00257 0.75 -0.4 258,483 - MPMX19_00257 0.75 -0.8 258,483 - MPMX19_00257 0.75 -0.7 258,483 - MPMX19_00257 0.75 -0.1 258,483 - MPMX19_00257 0.75 +0.2 258,483 - MPMX19_00257 0.75 -1.1 258,483 - MPMX19_00257 0.75 -1.0 258,483 - MPMX19_00257 0.75 -0.2 258,483 - MPMX19_00257 0.75 -1.7 258,483 - MPMX19_00257 0.75 +0.6 258,629 + +0.4 258,629 + +0.4 258,629 + -1.1 258,629 + -1.5 258,629 + +0.2 258,629 + +0.7 258,629 + +0.8 258,629 + +0.3 258,629 + +0.2 258,629 + -0.4 258,629 + -0.9 258,629 + +0.0 258,629 + -0.4 258,629 + -1.2 258,629 + +1.3 258,630 - -1.4 258,630 - +0.2 258,630 - -0.6 258,630 - -0.1 258,630 - -1.9 258,630 - +1.0 258,630 - -0.5 258,630 - -0.6 258,630 - -0.5 258,630 - -0.3 258,707 - -2.4 258,729 - +0.1 258,895 - -0.9 259,053 - MPMX19_00258 0.20 -0.1 259,415 + MPMX19_00258 0.43 -0.7 259,415 + MPMX19_00258 0.43 -2.1 259,415 + MPMX19_00258 0.43 -1.9 259,415 + MPMX19_00258 0.43 -0.4 259,416 - MPMX19_00258 0.43 -0.5 259,416 - MPMX19_00258 0.43 -0.4 259,416 - MPMX19_00258 0.43 -0.2 259,416 - MPMX19_00258 0.43 -1.7 259,416 - MPMX19_00258 0.43 -0.9 260,186 + -2.2 260,186 + -1.1 260,186 + +0.6 260,186 + +0.1 260,186 + +0.1 260,186 + +1.4 260,186 + -1.5 260,186 + +0.0 260,186 + +0.6 260,186 + -1.1 260,186 + -0.4 260,186 + +0.7 260,186 + +0.1 260,186 + +0.9 260,187 - +0.1 260,187 - -1.3 260,187 - -1.6 260,187 - -0.1 260,187 - +0.0 260,187 - -0.9 260,187 - -0.2 260,187 - -1.4 260,187 - +0.5 260,187 - +0.3 260,187 - +0.2 260,187 - -0.4 260,187 - +0.0 260,187 - -0.1 260,189 + +0.3 260,189 + -0.1 260,189 + -0.1 260,189 + -1.6 260,190 - -2.1 260,190 - +1.2 260,190 - +0.0 260,190 - +0.0 260,243 + +0.0 260,243 + -1.5 260,243 + -0.6 260,243 + +1.2 260,243 + -0.3 260,243 + +1.6 260,243 + -1.0 260,243 + +0.4 260,243 + -0.6 260,244 - +0.1 260,244 - -0.4 260,244 - +0.4 260,244 - +0.2 260,244 - -0.4 260,244 - +1.0 260,244 - +0.2 260,244 - -1.0 260,351 + -1.3 260,351 + -0.4 260,351 + +0.1 260,351 + +0.1 260,351 + +0.6 260,351 + +0.3 260,351 + +1.1 260,351 + +0.1 260,351 + +0.2 260,351 + +0.5 260,351 + -2.3 260,351 + -0.3 260,352 - -2.1 260,352 - -0.4 260,352 - -0.4 260,352 - +1.0 260,352 - +1.6 260,352 - +0.6 260,352 - -0.3 260,352 - -1.9 260,352 - -0.0 260,352 - -1.9 260,876 + MPMX19_00259 0.27 +1.1 260,876 + MPMX19_00259 0.27 +1.6 260,876 + MPMX19_00259 0.27 +0.4 260,876 + MPMX19_00259 0.27 -0.3 260,876 + MPMX19_00259 0.27 -0.1 260,876 + MPMX19_00259 0.27 +1.2 260,876 + MPMX19_00259 0.27 -0.9 260,876 + MPMX19_00259 0.27 -0.8 260,876 + MPMX19_00259 0.27 +1.4 260,876 + MPMX19_00259 0.27 -1.4 260,876 + MPMX19_00259 0.27 -1.2 260,876 + MPMX19_00259 0.27 -0.1 260,876 + MPMX19_00259 0.27 -0.3 260,877 - MPMX19_00259 0.27 -1.7 260,877 - MPMX19_00259 0.27 -2.3 260,877 - MPMX19_00259 0.27 -0.8 260,877 - MPMX19_00259 0.27 +0.2 260,877 - MPMX19_00259 0.27 +0.6 260,877 - MPMX19_00259 0.27 -1.1 260,877 - MPMX19_00259 0.27 -1.9 260,877 - MPMX19_00259 0.27 +0.1 260,877 - MPMX19_00259 0.27 -0.5 260,877 - MPMX19_00259 0.27 -0.7 260,877 - MPMX19_00259 0.27 -0.7 260,877 - MPMX19_00259 0.27 +1.1 260,877 - MPMX19_00259 0.27 +0.5 260,927 + MPMX19_00259 0.30 -0.5 260,927 + MPMX19_00259 0.30 -1.9 260,927 + MPMX19_00259 0.30 -1.0 260,927 + MPMX19_00259 0.30 +1.2 260,927 + MPMX19_00259 0.30 +0.6 260,927 + MPMX19_00259 0.30 -0.3 260,927 + MPMX19_00259 0.30 +0.1 260,927 + MPMX19_00259 0.30 -0.5 260,927 + MPMX19_00259 0.30 -0.7 260,927 + MPMX19_00259 0.30 -0.4 260,927 + MPMX19_00259 0.30 -2.7 260,927 + MPMX19_00259 0.30 +0.1 260,928 - MPMX19_00259 0.30 -0.1 260,928 - MPMX19_00259 0.30 +1.3 260,928 - MPMX19_00259 0.30 -0.4 260,928 - MPMX19_00259 0.30 -1.4 260,928 - MPMX19_00259 0.30 -1.5 260,928 - MPMX19_00259 0.30 -1.7 260,928 - MPMX19_00259 0.30 +2.8 260,928 - MPMX19_00259 0.30 -0.4 260,928 - MPMX19_00259 0.30 +0.1 260,928 - MPMX19_00259 0.30 -0.2 260,928 - MPMX19_00259 0.30 -0.1 260,928 - MPMX19_00259 0.30 -0.3 260,928 - MPMX19_00259 0.30 -0.8 260,928 - MPMX19_00259 0.30 -0.2 260,928 - MPMX19_00259 0.30 +0.8 260,928 - MPMX19_00259 0.30 +0.6 260,928 - MPMX19_00259 0.30 -1.5 260,928 - MPMX19_00259 0.30 -1.3 260,987 + MPMX19_00259 0.33 -0.6 260,987 + MPMX19_00259 0.33 +1.2 260,987 + MPMX19_00259 0.33 -1.9 260,987 + MPMX19_00259 0.33 -1.0 260,987 + MPMX19_00259 0.33 -1.4 260,987 + MPMX19_00259 0.33 -1.0 260,987 + MPMX19_00259 0.33 -0.2 260,988 - MPMX19_00259 0.33 -1.9 260,988 - MPMX19_00259 0.33 +2.6 260,988 - MPMX19_00259 0.33 -0.8 261,005 + MPMX19_00259 0.33 -2.6 261,005 + MPMX19_00259 0.33 +0.3 261,005 + MPMX19_00259 0.33 -0.2 261,005 + MPMX19_00259 0.33 +0.6 261,005 + MPMX19_00259 0.33 -1.4 261,005 + MPMX19_00259 0.33 +1.3 261,005 + MPMX19_00259 0.33 +2.6 261,005 + MPMX19_00259 0.33 +0.3 261,005 + MPMX19_00259 0.33 +0.3 261,005 + MPMX19_00259 0.33 -1.7 261,006 - MPMX19_00259 0.34 -0.7 261,006 - MPMX19_00259 0.34 -0.8 261,006 - MPMX19_00259 0.34 -1.0 261,006 - MPMX19_00259 0.34 -0.4 261,006 - MPMX19_00259 0.34 -1.4 261,006 - MPMX19_00259 0.34 -0.7 261,006 - MPMX19_00259 0.34 -0.5 261,006 - MPMX19_00259 0.34 -2.0 261,006 - MPMX19_00259 0.34 +0.4 261,006 - MPMX19_00259 0.34 -0.7 261,006 - MPMX19_00259 0.34 -0.6 261,006 - MPMX19_00259 0.34 -2.0 261,023 + MPMX19_00259 0.34 +0.4 261,023 + MPMX19_00259 0.34 -0.3 261,023 + MPMX19_00259 0.34 +1.9 261,023 + MPMX19_00259 0.34 -1.3 261,023 + MPMX19_00259 0.34 -1.2 261,023 + MPMX19_00259 0.34 -1.0 261,023 + MPMX19_00259 0.34 +1.4 261,023 + MPMX19_00259 0.34 -1.4 261,023 + MPMX19_00259 0.34 -0.6 261,023 + MPMX19_00259 0.34 -0.3 261,023 + MPMX19_00259 0.34 +1.6 261,023 + MPMX19_00259 0.34 -0.4 261,023 + MPMX19_00259 0.34 +0.3 261,023 + MPMX19_00259 0.34 -1.0 261,023 + MPMX19_00259 0.34 -1.0 261,023 + MPMX19_00259 0.34 -0.2 261,023 + MPMX19_00259 0.34 -1.2 261,024 - MPMX19_00259 0.34 +0.8 261,024 - MPMX19_00259 0.34 +0.7 261,024 - MPMX19_00259 0.34 -0.6 261,024 - MPMX19_00259 0.34 +1.2 261,024 - MPMX19_00259 0.34 +0.9 261,024 - MPMX19_00259 0.34 -0.1 261,024 - MPMX19_00259 0.34 -0.4 261,266 + MPMX19_00259 0.46 +0.0 261,266 + MPMX19_00259 0.46 -1.6 261,266 + MPMX19_00259 0.46 +0.5 261,266 + MPMX19_00259 0.46 -0.5 261,266 + MPMX19_00259 0.46 -0.5 261,266 + MPMX19_00259 0.46 -0.1 261,266 + MPMX19_00259 0.46 -0.2 261,266 + MPMX19_00259 0.46 +0.8 261,266 + MPMX19_00259 0.46 -0.3 261,266 + MPMX19_00259 0.46 -1.1 261,267 - MPMX19_00259 0.46 -1.1 261,267 - MPMX19_00259 0.46 -1.3 261,267 - MPMX19_00259 0.46 -0.3
Or see this region's nucleotide sequence