Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00130 and MPMX19_00131 are separated by 112 nucleotides MPMX19_00131 and MPMX19_00132 are separated by 104 nucleotides MPMX19_00132 and MPMX19_00133 are separated by 2 nucleotides MPMX19_00133 and MPMX19_00134 are separated by 60 nucleotides
MPMX19_00130: MPMX19_00130 - hypothetical protein, at 141,072 to 142,259
_00130
MPMX19_00131: MPMX19_00131 - hypothetical protein, at 142,372 to 142,623
_00131
MPMX19_00132: MPMX19_00132 - hypothetical protein, at 142,728 to 143,348
_00132
MPMX19_00133: MPMX19_00133 - hypothetical protein, at 143,351 to 144,025
_00133
MPMX19_00134: MPMX19_00134 - hypothetical protein, at 144,086 to 145,114
_00134
Position (kb) 142
143
144 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 142.029 kb on + strand, within MPMX19_00130 at 142.471 kb on + strand, within MPMX19_00131 at 142.471 kb on + strand, within MPMX19_00131 at 142.472 kb on - strand, within MPMX19_00131 at 142.513 kb on + strand, within MPMX19_00131 at 142.514 kb on - strand, within MPMX19_00131 at 142.829 kb on + strand, within MPMX19_00132 at 142.829 kb on + strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.930 kb on + strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.534 kb on + strand, within MPMX19_00133 at 143.534 kb on + strand, within MPMX19_00133 at 143.534 kb on + strand, within MPMX19_00133 at 143.535 kb on - strand, within MPMX19_00133 at 143.535 kb on - strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.570 kb on - strand, within MPMX19_00133 at 143.570 kb on - strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.663 kb on + strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.664 kb on - strand, within MPMX19_00133 at 143.936 kb on + strand, within MPMX19_00133 at 143.936 kb on + strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.937 kb on - strand, within MPMX19_00133 at 143.953 kb on - strand, within MPMX19_00133 at 143.953 kb on - strand, within MPMX19_00133 at 143.953 kb on - strand, within MPMX19_00133 at 144.023 kb on + strand at 144.023 kb on + strand at 144.024 kb on - strand at 144.024 kb on - strand at 144.024 kb on - strand at 144.024 kb on - strand at 144.055 kb on - strand at 144.071 kb on + strand at 144.071 kb on + strand at 144.072 kb on - strand at 144.072 kb on - strand at 144.139 kb on - strand at 144.173 kb on - strand at 144.339 kb on - strand, within MPMX19_00134
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 141,760 + MPMX19_00130 0.58 -0.6 141,760 + MPMX19_00130 0.58 -1.5 141,760 + MPMX19_00130 0.58 -0.4 141,760 + MPMX19_00130 0.58 -1.5 141,761 - MPMX19_00130 0.58 -0.7 141,761 - MPMX19_00130 0.58 +0.8 141,766 + MPMX19_00130 0.58 +0.3 141,766 + MPMX19_00130 0.58 +0.8 141,766 + MPMX19_00130 0.58 -1.4 141,766 + MPMX19_00130 0.58 +0.9 141,766 + MPMX19_00130 0.58 -0.5 141,766 + MPMX19_00130 0.58 -0.0 141,766 + MPMX19_00130 0.58 -0.8 141,766 + MPMX19_00130 0.58 -1.5 141,766 + MPMX19_00130 0.58 -1.1 141,766 + MPMX19_00130 0.58 -0.7 141,766 + MPMX19_00130 0.58 -1.4 141,766 + MPMX19_00130 0.58 -3.8 141,766 + MPMX19_00130 0.58 +0.5 141,766 + MPMX19_00130 0.58 -0.2 141,766 + MPMX19_00130 0.58 +0.6 141,766 + MPMX19_00130 0.58 -1.2 141,766 + MPMX19_00130 0.58 -1.0 141,766 + MPMX19_00130 0.58 -0.4 141,766 + MPMX19_00130 0.58 -0.7 141,766 + MPMX19_00130 0.58 +0.7 141,767 - MPMX19_00130 0.59 -1.2 141,767 - MPMX19_00130 0.59 -0.1 141,767 - MPMX19_00130 0.59 +1.3 141,767 - MPMX19_00130 0.59 +0.9 141,767 - MPMX19_00130 0.59 -0.8 141,767 - MPMX19_00130 0.59 -0.8 141,767 - MPMX19_00130 0.59 -0.5 141,767 - MPMX19_00130 0.59 +0.2 141,767 - MPMX19_00130 0.59 +0.0 141,767 - MPMX19_00130 0.59 -1.0 141,770 + MPMX19_00130 0.59 -0.6 141,770 + MPMX19_00130 0.59 -1.3 141,770 + MPMX19_00130 0.59 -1.0 141,771 - MPMX19_00130 0.59 -0.8 141,771 - MPMX19_00130 0.59 +0.0 141,771 - MPMX19_00130 0.59 -3.0 141,771 - MPMX19_00130 0.59 -2.0 141,773 + MPMX19_00130 0.59 -0.3 141,773 + MPMX19_00130 0.59 +1.0 141,774 - MPMX19_00130 0.59 +1.2 141,774 - MPMX19_00130 0.59 -0.1 141,779 + MPMX19_00130 0.60 -0.6 141,779 + MPMX19_00130 0.60 +0.7 141,779 + MPMX19_00130 0.60 +0.6 141,779 + MPMX19_00130 0.60 -1.1 141,779 + MPMX19_00130 0.60 -1.9 141,779 + MPMX19_00130 0.60 +0.2 141,780 - MPMX19_00130 0.60 +0.3 141,780 - MPMX19_00130 0.60 +0.3 141,780 - MPMX19_00130 0.60 -1.2 141,780 - MPMX19_00130 0.60 -0.7 141,780 - MPMX19_00130 0.60 +0.3 141,780 - MPMX19_00130 0.60 -0.4 141,780 - MPMX19_00130 0.60 +0.2 142,029 + MPMX19_00130 0.81 -0.6 142,471 + MPMX19_00131 0.39 -0.4 142,471 + MPMX19_00131 0.39 -0.9 142,472 - MPMX19_00131 0.40 +0.3 142,513 + MPMX19_00131 0.56 -0.9 142,514 - MPMX19_00131 0.56 -0.6 142,829 + MPMX19_00132 0.16 -0.7 142,829 + MPMX19_00132 0.16 -1.1 142,830 - MPMX19_00132 0.16 -2.1 142,830 - MPMX19_00132 0.16 -0.8 142,830 - MPMX19_00132 0.16 +0.0 142,830 - MPMX19_00132 0.16 -0.7 142,930 + MPMX19_00132 0.33 -0.3 142,931 - MPMX19_00132 0.33 -1.6 142,931 - MPMX19_00132 0.33 -0.2 143,100 + MPMX19_00132 0.60 +0.4 143,100 + MPMX19_00132 0.60 -0.2 143,101 - MPMX19_00132 0.60 -1.7 143,101 - MPMX19_00132 0.60 -0.4 143,101 - MPMX19_00132 0.60 -1.3 143,322 + -0.2 143,322 + +0.0 143,322 + -0.5 143,322 + -0.0 143,322 + -0.6 143,322 + -1.3 143,322 + -0.6 143,322 + +0.3 143,322 + -1.2 143,322 + -1.4 143,322 + +1.0 143,322 + -1.0 143,322 + -0.4 143,322 + -2.2 143,323 - -0.7 143,323 - -0.5 143,323 - -0.4 143,323 - -0.3 143,323 - +0.4 143,323 - -0.4 143,323 - -1.3 143,323 - -0.1 143,323 - -1.3 143,323 - -2.2 143,534 + MPMX19_00133 0.27 +0.0 143,534 + MPMX19_00133 0.27 -1.7 143,534 + MPMX19_00133 0.27 -0.7 143,535 - MPMX19_00133 0.27 +0.0 143,535 - MPMX19_00133 0.27 +1.4 143,559 + MPMX19_00133 0.31 -1.4 143,559 + MPMX19_00133 0.31 +0.2 143,559 + MPMX19_00133 0.31 +0.6 143,559 + MPMX19_00133 0.31 +0.0 143,560 - MPMX19_00133 0.31 +0.2 143,560 - MPMX19_00133 0.31 -0.3 143,560 - MPMX19_00133 0.31 -1.6 143,560 - MPMX19_00133 0.31 -3.0 143,560 - MPMX19_00133 0.31 -0.0 143,560 - MPMX19_00133 0.31 -2.8 143,560 - MPMX19_00133 0.31 -2.3 143,560 - MPMX19_00133 0.31 -0.4 143,560 - MPMX19_00133 0.31 +0.8 143,560 - MPMX19_00133 0.31 -1.0 143,560 - MPMX19_00133 0.31 -2.3 143,560 - MPMX19_00133 0.31 +0.5 143,560 - MPMX19_00133 0.31 +0.0 143,569 + MPMX19_00133 0.32 -1.0 143,569 + MPMX19_00133 0.32 +0.9 143,569 + MPMX19_00133 0.32 -2.6 143,570 - MPMX19_00133 0.32 -0.7 143,570 - MPMX19_00133 0.32 +0.1 143,663 + MPMX19_00133 0.46 -1.2 143,663 + MPMX19_00133 0.46 +0.6 143,663 + MPMX19_00133 0.46 +0.2 143,663 + MPMX19_00133 0.46 -0.1 143,663 + MPMX19_00133 0.46 -0.7 143,663 + MPMX19_00133 0.46 +0.3 143,663 + MPMX19_00133 0.46 -1.7 143,663 + MPMX19_00133 0.46 -0.6 143,663 + MPMX19_00133 0.46 +0.4 143,663 + MPMX19_00133 0.46 -1.3 143,663 + MPMX19_00133 0.46 -0.7 143,664 - MPMX19_00133 0.46 -0.1 143,664 - MPMX19_00133 0.46 -0.6 143,664 - MPMX19_00133 0.46 -0.8 143,664 - MPMX19_00133 0.46 +0.9 143,664 - MPMX19_00133 0.46 -0.1 143,664 - MPMX19_00133 0.46 -0.3 143,664 - MPMX19_00133 0.46 -1.1 143,664 - MPMX19_00133 0.46 -1.7 143,664 - MPMX19_00133 0.46 -3.1 143,664 - MPMX19_00133 0.46 +0.0 143,664 - MPMX19_00133 0.46 -1.0 143,664 - MPMX19_00133 0.46 +0.0 143,664 - MPMX19_00133 0.46 -1.0 143,664 - MPMX19_00133 0.46 -1.3 143,664 - MPMX19_00133 0.46 -0.6 143,936 + MPMX19_00133 0.87 +0.3 143,936 + MPMX19_00133 0.87 -0.7 143,937 - MPMX19_00133 0.87 -1.3 143,937 - MPMX19_00133 0.87 +0.0 143,937 - MPMX19_00133 0.87 -1.5 143,937 - MPMX19_00133 0.87 -0.9 143,937 - MPMX19_00133 0.87 -0.8 143,937 - MPMX19_00133 0.87 -0.7 143,937 - MPMX19_00133 0.87 -1.8 143,937 - MPMX19_00133 0.87 +0.6 143,937 - MPMX19_00133 0.87 -0.8 143,953 - MPMX19_00133 0.89 -0.4 143,953 - MPMX19_00133 0.89 -0.4 143,953 - MPMX19_00133 0.89 +0.0 144,023 + -1.6 144,023 + -0.8 144,024 - -0.7 144,024 - -2.3 144,024 - -1.2 144,024 - +0.2 144,055 - +0.6 144,071 + -0.9 144,071 + +0.4 144,072 - -0.9 144,072 - -1.2 144,139 - +0.4 144,173 - -2.0 144,339 - MPMX19_00134 0.25 -0.7
Or see this region's nucleotide sequence