Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00129

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00129 and MPMX19_00130 are separated by 439 nucleotides MPMX19_00129: MPMX19_00129 - hypothetical protein, at 140,366 to 140,632 _00129 MPMX19_00130: MPMX19_00130 - hypothetical protein, at 141,072 to 142,259 _00130 Position (kb) 140 141Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 139.650 kb on - strandat 139.675 kb on - strandat 139.675 kb on - strandat 139.675 kb on - strandat 139.879 kb on + strandat 140.177 kb on + strandat 140.177 kb on + strandat 140.177 kb on + strandat 140.419 kb on + strand, within MPMX19_00129at 140.470 kb on + strand, within MPMX19_00129at 140.470 kb on + strand, within MPMX19_00129at 140.938 kb on + strandat 140.939 kb on - strandat 140.939 kb on - strandat 141.009 kb on - strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.102 kb on + strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.103 kb on - strandat 141.266 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.441 kb on + strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.442 kb on - strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.486 kb on + strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130at 141.487 kb on - strand, within MPMX19_00130

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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139,650 - +0.2
139,675 - -2.1
139,675 - -1.5
139,675 - +0.0
139,879 + -2.1
140,177 + -3.0
140,177 + -1.4
140,177 + -1.6
140,419 + MPMX19_00129 0.20 -2.1
140,470 + MPMX19_00129 0.39 -0.7
140,470 + MPMX19_00129 0.39 +0.8
140,938 + -1.5
140,939 - -2.2
140,939 - +1.8
141,009 - +1.4
141,102 + -0.2
141,102 + -1.6
141,102 + +0.0
141,102 + -0.9
141,102 + -2.6
141,102 + +0.1
141,102 + +1.4
141,102 + +0.4
141,102 + -0.2
141,102 + -1.3
141,102 + -0.5
141,102 + +0.2
141,102 + -1.5
141,102 + -0.4
141,102 + -1.1
141,103 - -0.4
141,103 - -0.2
141,103 - -1.6
141,103 - -0.8
141,103 - +0.6
141,103 - -1.2
141,103 - +0.8
141,103 - -0.8
141,103 - +0.4
141,266 + MPMX19_00130 0.16 -0.8
141,441 + MPMX19_00130 0.31 -0.9
141,441 + MPMX19_00130 0.31 +0.7
141,441 + MPMX19_00130 0.31 -1.8
141,441 + MPMX19_00130 0.31 -1.0
141,441 + MPMX19_00130 0.31 -0.4
141,441 + MPMX19_00130 0.31 -1.0
141,442 - MPMX19_00130 0.31 -0.6
141,442 - MPMX19_00130 0.31 +0.0
141,442 - MPMX19_00130 0.31 -1.6
141,442 - MPMX19_00130 0.31 -1.2
141,442 - MPMX19_00130 0.31 -0.5
141,442 - MPMX19_00130 0.31 -0.7
141,442 - MPMX19_00130 0.31 -1.2
141,442 - MPMX19_00130 0.31 -0.4
141,486 + MPMX19_00130 0.35 -1.2
141,486 + MPMX19_00130 0.35 -0.7
141,486 + MPMX19_00130 0.35 -0.5
141,486 + MPMX19_00130 0.35 +0.4
141,486 + MPMX19_00130 0.35 -1.1
141,486 + MPMX19_00130 0.35 -0.4
141,486 + MPMX19_00130 0.35 -2.2
141,486 + MPMX19_00130 0.35 -0.6
141,486 + MPMX19_00130 0.35 -0.7
141,486 + MPMX19_00130 0.35 +0.6
141,487 - MPMX19_00130 0.35 +1.6
141,487 - MPMX19_00130 0.35 -0.5
141,487 - MPMX19_00130 0.35 +0.6
141,487 - MPMX19_00130 0.35 -0.4
141,487 - MPMX19_00130 0.35 -0.1
141,487 - MPMX19_00130 0.35 -1.2
141,487 - MPMX19_00130 0.35 -1.1
141,487 - MPMX19_00130 0.35 +0.4
141,487 - MPMX19_00130 0.35 -2.0
141,487 - MPMX19_00130 0.35 +0.6
141,487 - MPMX19_00130 0.35 -0.9
141,487 - MPMX19_00130 0.35 -0.5
141,487 - MPMX19_00130 0.35 +1.6
141,487 - MPMX19_00130 0.35 -1.1
141,487 - MPMX19_00130 0.35 -1.4

Or see this region's nucleotide sequence