Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00081 and MPMX19_00082 are separated by 35 nucleotides MPMX19_00082 and MPMX19_00083 are separated by 135 nucleotides MPMX19_00083 and MPMX19_00084 are separated by 12 nucleotides
MPMX19_00081: MPMX19_00081 - 50S ribosomal protein L35, at 87,166 to 87,417
_00081
MPMX19_00082: MPMX19_00082 - 50S ribosomal protein L20, at 87,453 to 87,824
_00082
MPMX19_00083: MPMX19_00083 - Phenylalanine--tRNA ligase alpha subunit, at 87,960 to 89,027
_00083
MPMX19_00084: MPMX19_00084 - Phenylalanine--tRNA ligase beta subunit, at 89,040 to 91,451
_00084
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -2
-1
0
1 at 86.963 kb on + strand at 86.963 kb on + strand at 86.963 kb on + strand at 86.963 kb on + strand at 86.964 kb on - strand at 86.964 kb on - strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.999 kb on - strand at 86.999 kb on - strand at 87.117 kb on + strand at 87.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 86,963 + +1.2 86,963 + -0.7 86,963 + -1.2 86,963 + -0.6 86,964 - +0.2 86,964 - -0.4 86,968 + +0.6 86,968 + -1.1 86,968 + -0.2 86,968 + +0.3 86,968 + +0.0 86,968 + -0.2 86,968 + -0.6 86,968 + -0.8 86,968 + -0.7 86,968 + -1.0 86,968 + +0.6 86,968 + +1.4 86,968 + -0.2 86,968 + -2.0 86,968 + -0.4 86,969 - +0.6 86,969 - -0.4 86,969 - -0.6 86,969 - -0.9 86,969 - -2.6 86,969 - -0.6 86,969 - -1.0 86,969 - -0.2 86,969 - -1.8 86,969 - -0.1 86,969 - -0.7 86,969 - -0.7 86,998 + -0.7 86,998 + -0.7 86,998 + -0.2 86,998 + +0.0 86,999 - -0.1 86,999 - -1.0 87,117 + +0.1 87,117 + -2.6
Or see this region's nucleotide sequence