Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00036 and MPMX19_00037 overlap by 4 nucleotides MPMX19_00037 and MPMX19_00038 are separated by 170 nucleotides MPMX19_00038 and MPMX19_00039 are separated by 402 nucleotides
MPMX19_00036: MPMX19_00036 - hypothetical protein, at 40,232 to 40,786
_00036
MPMX19_00037: MPMX19_00037 - hypothetical protein, at 40,783 to 41,232
_00037
MPMX19_00038: MPMX19_00038 - Transcriptional regulator SlyA, at 41,403 to 41,909
_00038
MPMX19_00039: MPMX19_00039 - Fumarylpyruvate hydrolase, at 42,312 to 42,995
_00039
Position (kb) 41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.438 kb on + strand, within MPMX19_00036 at 40.438 kb on + strand, within MPMX19_00036 at 40.439 kb on - strand, within MPMX19_00036 at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.959 kb on + strand, within MPMX19_00037 at 40.959 kb on + strand, within MPMX19_00037 at 40.960 kb on - strand, within MPMX19_00037 at 40.960 kb on - strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 41.016 kb on + strand, within MPMX19_00037 at 41.016 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.086 kb on - strand, within MPMX19_00037 at 41.103 kb on + strand, within MPMX19_00037 at 41.104 kb on - strand, within MPMX19_00037 at 41.104 kb on - strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.153 kb on + strand, within MPMX19_00037 at 41.153 kb on + strand, within MPMX19_00037 at 41.170 kb on + strand, within MPMX19_00037 at 41.170 kb on + strand, within MPMX19_00037 at 41.171 kb on - strand, within MPMX19_00037 at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.405 kb on - strand at 41.405 kb on - strand at 41.939 kb on - strand at 41.939 kb on - strand at 41.987 kb on - strand at 42.274 kb on + strand at 42.274 kb on + strand at 42.275 kb on - strand at 42.275 kb on - strand at 42.275 kb on - strand at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.386 kb on + strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.387 kb on - strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.390 kb on + strand, within MPMX19_00039 at 42.391 kb on - strand, within MPMX19_00039 at 42.391 kb on - strand, within MPMX19_00039 at 42.391 kb on - strand, within MPMX19_00039 at 42.391 kb on - strand, within MPMX19_00039 at 42.391 kb on - strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.408 kb on + strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.409 kb on - strand, within MPMX19_00039 at 42.621 kb on + strand, within MPMX19_00039 at 42.638 kb on + strand, within MPMX19_00039 at 42.638 kb on + strand, within MPMX19_00039 at 42.638 kb on + strand, within MPMX19_00039 at 42.638 kb on + strand, within MPMX19_00039 at 42.638 kb on + strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.639 kb on - strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.855 kb on + strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.856 kb on - strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.897 kb on + strand, within MPMX19_00039 at 42.898 kb on - strand, within MPMX19_00039 at 42.898 kb on - strand, within MPMX19_00039 at 42.898 kb on - strand, within MPMX19_00039 at 42.898 kb on - strand, within MPMX19_00039 at 42.898 kb on - strand, within MPMX19_00039
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 40,438 + MPMX19_00036 0.37 -0.7 40,438 + MPMX19_00036 0.37 -0.6 40,439 - MPMX19_00036 0.37 -0.4 40,782 + +0.9 40,782 + -1.6 40,782 + -0.7 40,782 + -0.7 40,782 + -0.4 40,782 + -0.7 40,782 + +0.3 40,783 - -0.4 40,783 - -1.3 40,783 - +0.6 40,783 - -2.5 40,783 - -1.4 40,783 - -1.0 40,959 + MPMX19_00037 0.39 -1.6 40,959 + MPMX19_00037 0.39 +1.8 40,960 - MPMX19_00037 0.39 -1.3 40,960 - MPMX19_00037 0.39 +0.5 40,979 + MPMX19_00037 0.44 +0.3 40,979 + MPMX19_00037 0.44 +0.1 40,979 + MPMX19_00037 0.44 -0.1 40,979 + MPMX19_00037 0.44 -0.4 40,979 + MPMX19_00037 0.44 +0.5 40,980 - MPMX19_00037 0.44 -1.1 40,980 - MPMX19_00037 0.44 -0.7 40,980 - MPMX19_00037 0.44 -1.8 41,016 + MPMX19_00037 0.52 -0.6 41,016 + MPMX19_00037 0.52 -0.6 41,065 + MPMX19_00037 0.63 -1.3 41,065 + MPMX19_00037 0.63 -0.9 41,065 + MPMX19_00037 0.63 -2.6 41,065 + MPMX19_00037 0.63 +0.3 41,066 - MPMX19_00037 0.63 -1.6 41,066 - MPMX19_00037 0.63 -0.1 41,066 - MPMX19_00037 0.63 +0.4 41,086 - MPMX19_00037 0.67 -1.6 41,103 + MPMX19_00037 0.71 -0.3 41,104 - MPMX19_00037 0.71 -2.0 41,104 - MPMX19_00037 0.71 -1.2 41,137 + MPMX19_00037 0.79 -0.2 41,137 + MPMX19_00037 0.79 -2.7 41,137 + MPMX19_00037 0.79 -1.0 41,137 + MPMX19_00037 0.79 -1.7 41,137 + MPMX19_00037 0.79 -1.1 41,137 + MPMX19_00037 0.79 -0.1 41,137 + MPMX19_00037 0.79 -0.1 41,137 + MPMX19_00037 0.79 -0.9 41,137 + MPMX19_00037 0.79 -0.8 41,137 + MPMX19_00037 0.79 +0.5 41,137 + MPMX19_00037 0.79 -0.5 41,137 + MPMX19_00037 0.79 -1.4 41,137 + MPMX19_00037 0.79 +0.2 41,137 + MPMX19_00037 0.79 +0.4 41,137 + MPMX19_00037 0.79 +0.5 41,137 + MPMX19_00037 0.79 -1.4 41,137 + MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 -0.3 41,138 - MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 +0.8 41,138 - MPMX19_00037 0.79 +0.0 41,138 - MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 -1.2 41,138 - MPMX19_00037 0.79 -0.6 41,138 - MPMX19_00037 0.79 -0.6 41,138 - MPMX19_00037 0.79 +0.2 41,138 - MPMX19_00037 0.79 +0.4 41,138 - MPMX19_00037 0.79 +0.0 41,138 - MPMX19_00037 0.79 -0.8 41,153 + MPMX19_00037 0.82 -0.4 41,153 + MPMX19_00037 0.82 -2.0 41,170 + MPMX19_00037 0.86 -1.7 41,170 + MPMX19_00037 0.86 -0.6 41,171 - MPMX19_00037 0.86 -0.7 41,287 + -2.1 41,287 + -0.1 41,287 + -1.6 41,287 + -1.1 41,287 + +0.8 41,287 + +1.8 41,287 + -2.1 41,287 + -0.6 41,287 + -1.7 41,287 + +0.4 41,287 + -1.7 41,287 + -1.6 41,287 + +0.9 41,287 + -1.8 41,287 + +0.3 41,288 - -0.1 41,288 - +0.9 41,288 - -0.6 41,288 - -1.4 41,288 - -1.2 41,314 + -1.2 41,314 + +0.6 41,314 + -0.1 41,314 + -0.8 41,314 + -0.2 41,314 + -1.0 41,315 - -1.3 41,315 - -0.6 41,315 - -0.8 41,315 - +0.6 41,315 - -1.4 41,315 - +1.3 41,315 - +0.0 41,404 + +0.2 41,404 + +1.1 41,404 + -1.2 41,404 + +1.3 41,404 + -1.2 41,404 + -0.4 41,404 + +0.3 41,405 - -0.7 41,405 - +0.8 41,939 - -1.1 41,939 - -2.1 41,987 - +0.6 42,274 + -1.7 42,274 + -0.8 42,275 - -1.1 42,275 - -0.9 42,275 - -1.2 42,386 + MPMX19_00039 0.11 -0.1 42,386 + MPMX19_00039 0.11 +1.0 42,386 + MPMX19_00039 0.11 -0.8 42,386 + MPMX19_00039 0.11 +0.3 42,386 + MPMX19_00039 0.11 -0.3 42,386 + MPMX19_00039 0.11 +0.0 42,386 + MPMX19_00039 0.11 +0.4 42,386 + MPMX19_00039 0.11 +0.6 42,386 + MPMX19_00039 0.11 +0.4 42,386 + MPMX19_00039 0.11 -0.2 42,386 + MPMX19_00039 0.11 -2.8 42,386 + MPMX19_00039 0.11 -0.3 42,386 + MPMX19_00039 0.11 -0.8 42,387 - MPMX19_00039 0.11 -0.8 42,387 - MPMX19_00039 0.11 -1.8 42,387 - MPMX19_00039 0.11 -0.3 42,387 - MPMX19_00039 0.11 -0.2 42,387 - MPMX19_00039 0.11 +0.2 42,387 - MPMX19_00039 0.11 -2.2 42,387 - MPMX19_00039 0.11 -0.5 42,390 + MPMX19_00039 0.11 -0.8 42,390 + MPMX19_00039 0.11 -0.6 42,390 + MPMX19_00039 0.11 -1.9 42,390 + MPMX19_00039 0.11 -1.2 42,390 + MPMX19_00039 0.11 -2.7 42,390 + MPMX19_00039 0.11 +0.4 42,390 + MPMX19_00039 0.11 +0.9 42,390 + MPMX19_00039 0.11 -1.8 42,390 + MPMX19_00039 0.11 -0.6 42,390 + MPMX19_00039 0.11 +0.4 42,390 + MPMX19_00039 0.11 -1.2 42,390 + MPMX19_00039 0.11 +0.5 42,390 + MPMX19_00039 0.11 -1.7 42,390 + MPMX19_00039 0.11 +0.0 42,390 + MPMX19_00039 0.11 +0.6 42,390 + MPMX19_00039 0.11 +0.9 42,391 - MPMX19_00039 0.12 -2.3 42,391 - MPMX19_00039 0.12 +0.6 42,391 - MPMX19_00039 0.12 -1.3 42,391 - MPMX19_00039 0.12 -1.6 42,391 - MPMX19_00039 0.12 -0.5 42,408 + MPMX19_00039 0.14 +0.3 42,408 + MPMX19_00039 0.14 -1.1 42,408 + MPMX19_00039 0.14 +0.1 42,408 + MPMX19_00039 0.14 +0.3 42,408 + MPMX19_00039 0.14 +0.1 42,408 + MPMX19_00039 0.14 -0.7 42,408 + MPMX19_00039 0.14 -2.0 42,408 + MPMX19_00039 0.14 -2.4 42,408 + MPMX19_00039 0.14 -1.9 42,408 + MPMX19_00039 0.14 +1.4 42,408 + MPMX19_00039 0.14 -0.4 42,409 - MPMX19_00039 0.14 +0.2 42,409 - MPMX19_00039 0.14 -1.7 42,409 - MPMX19_00039 0.14 +1.2 42,409 - MPMX19_00039 0.14 -1.0 42,409 - MPMX19_00039 0.14 -1.0 42,409 - MPMX19_00039 0.14 -1.3 42,409 - MPMX19_00039 0.14 -0.8 42,409 - MPMX19_00039 0.14 +0.4 42,409 - MPMX19_00039 0.14 -0.3 42,409 - MPMX19_00039 0.14 -1.6 42,409 - MPMX19_00039 0.14 -0.3 42,409 - MPMX19_00039 0.14 +0.6 42,409 - MPMX19_00039 0.14 -0.8 42,409 - MPMX19_00039 0.14 -0.5 42,621 + MPMX19_00039 0.45 -0.4 42,638 + MPMX19_00039 0.48 +0.3 42,638 + MPMX19_00039 0.48 +0.6 42,638 + MPMX19_00039 0.48 -1.2 42,638 + MPMX19_00039 0.48 -0.2 42,638 + MPMX19_00039 0.48 +0.9 42,639 - MPMX19_00039 0.48 +0.6 42,639 - MPMX19_00039 0.48 -0.5 42,639 - MPMX19_00039 0.48 +1.3 42,639 - MPMX19_00039 0.48 -0.2 42,639 - MPMX19_00039 0.48 -0.8 42,639 - MPMX19_00039 0.48 +0.7 42,639 - MPMX19_00039 0.48 -0.6 42,855 + MPMX19_00039 0.79 -1.2 42,855 + MPMX19_00039 0.79 -0.1 42,855 + MPMX19_00039 0.79 +1.3 42,855 + MPMX19_00039 0.79 -0.4 42,855 + MPMX19_00039 0.79 -0.1 42,855 + MPMX19_00039 0.79 +0.1 42,856 - MPMX19_00039 0.80 -1.1 42,856 - MPMX19_00039 0.80 +0.3 42,856 - MPMX19_00039 0.80 +0.0 42,856 - MPMX19_00039 0.80 +0.4 42,856 - MPMX19_00039 0.80 -0.8 42,856 - MPMX19_00039 0.80 +1.6 42,856 - MPMX19_00039 0.80 +0.4 42,856 - MPMX19_00039 0.80 +0.6 42,856 - MPMX19_00039 0.80 -0.5 42,856 - MPMX19_00039 0.80 -0.6 42,856 - MPMX19_00039 0.80 -0.7 42,856 - MPMX19_00039 0.80 -0.7 42,856 - MPMX19_00039 0.80 -0.9 42,856 - MPMX19_00039 0.80 -0.4 42,856 - MPMX19_00039 0.80 -1.0 42,897 + MPMX19_00039 0.86 +1.2 42,897 + MPMX19_00039 0.86 +0.0 42,897 + MPMX19_00039 0.86 -0.9 42,897 + MPMX19_00039 0.86 +0.1 42,897 + MPMX19_00039 0.86 +0.6 42,897 + MPMX19_00039 0.86 -0.7 42,897 + MPMX19_00039 0.86 +0.6 42,898 - MPMX19_00039 0.86 +0.4 42,898 - MPMX19_00039 0.86 +0.7 42,898 - MPMX19_00039 0.86 +0.0 42,898 - MPMX19_00039 0.86 -1.2 42,898 - MPMX19_00039 0.86 -2.5
Or see this region's nucleotide sequence