Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00034 and MPMX19_00035 are separated by 26 nucleotides MPMX19_00035 and MPMX19_00036 are separated by 13 nucleotides MPMX19_00036 and MPMX19_00037 overlap by 4 nucleotides MPMX19_00037 and MPMX19_00038 are separated by 170 nucleotides
MPMX19_00034: MPMX19_00034 - hypothetical protein, at 39,227 to 39,724
_00034
MPMX19_00035: MPMX19_00035 - hypothetical protein, at 39,751 to 40,218
_00035
MPMX19_00036: MPMX19_00036 - hypothetical protein, at 40,232 to 40,786
_00036
MPMX19_00037: MPMX19_00037 - hypothetical protein, at 40,783 to 41,232
_00037
MPMX19_00038: MPMX19_00038 - Transcriptional regulator SlyA, at 41,403 to 41,909
_00038
Position (kb) 40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.432 kb on - strand, within MPMX19_00034 at 39.432 kb on - strand, within MPMX19_00034 at 39.532 kb on + strand, within MPMX19_00034 at 39.532 kb on + strand, within MPMX19_00034 at 39.532 kb on + strand, within MPMX19_00034 at 39.533 kb on - strand, within MPMX19_00034 at 39.533 kb on - strand, within MPMX19_00034 at 39.533 kb on - strand, within MPMX19_00034 at 39.533 kb on - strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.540 kb on + strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.541 kb on - strand, within MPMX19_00034 at 39.602 kb on + strand, within MPMX19_00034 at 39.602 kb on + strand, within MPMX19_00034 at 39.602 kb on + strand, within MPMX19_00034 at 39.602 kb on + strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.603 kb on - strand, within MPMX19_00034 at 39.722 kb on + strand at 39.722 kb on + strand at 39.734 kb on + strand at 39.734 kb on + strand at 39.734 kb on + strand at 39.734 kb on + strand at 39.734 kb on + strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.735 kb on - strand at 39.906 kb on + strand, within MPMX19_00035 at 39.906 kb on + strand, within MPMX19_00035 at 39.906 kb on + strand, within MPMX19_00035 at 39.906 kb on + strand, within MPMX19_00035 at 39.907 kb on - strand, within MPMX19_00035 at 39.907 kb on - strand, within MPMX19_00035 at 39.953 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.988 kb on + strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 39.989 kb on - strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.015 kb on + strand, within MPMX19_00035 at 40.016 kb on - strand, within MPMX19_00035 at 40.016 kb on - strand, within MPMX19_00035 at 40.016 kb on - strand, within MPMX19_00035 at 40.016 kb on - strand, within MPMX19_00035 at 40.016 kb on - strand, within MPMX19_00035 at 40.198 kb on + strand at 40.198 kb on + strand at 40.199 kb on - strand at 40.266 kb on + strand at 40.266 kb on + strand at 40.267 kb on - strand at 40.267 kb on - strand at 40.324 kb on + strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.325 kb on - strand, within MPMX19_00036 at 40.438 kb on + strand, within MPMX19_00036 at 40.438 kb on + strand, within MPMX19_00036 at 40.439 kb on - strand, within MPMX19_00036 at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.782 kb on + strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.783 kb on - strand at 40.959 kb on + strand, within MPMX19_00037 at 40.959 kb on + strand, within MPMX19_00037 at 40.960 kb on - strand, within MPMX19_00037 at 40.960 kb on - strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.979 kb on + strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 40.980 kb on - strand, within MPMX19_00037 at 41.016 kb on + strand, within MPMX19_00037 at 41.016 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.065 kb on + strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.066 kb on - strand, within MPMX19_00037 at 41.086 kb on - strand, within MPMX19_00037 at 41.103 kb on + strand, within MPMX19_00037 at 41.104 kb on - strand, within MPMX19_00037 at 41.104 kb on - strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.137 kb on + strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.138 kb on - strand, within MPMX19_00037 at 41.153 kb on + strand, within MPMX19_00037 at 41.153 kb on + strand, within MPMX19_00037 at 41.170 kb on + strand, within MPMX19_00037 at 41.170 kb on + strand, within MPMX19_00037 at 41.171 kb on - strand, within MPMX19_00037 at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.287 kb on + strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.288 kb on - strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.314 kb on + strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.315 kb on - strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.405 kb on - strand at 41.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 39,432 - MPMX19_00034 0.41 -1.6 39,432 - MPMX19_00034 0.41 -2.0 39,532 + MPMX19_00034 0.61 -0.6 39,532 + MPMX19_00034 0.61 +0.1 39,532 + MPMX19_00034 0.61 +0.8 39,533 - MPMX19_00034 0.61 -1.0 39,533 - MPMX19_00034 0.61 -1.6 39,533 - MPMX19_00034 0.61 +0.2 39,533 - MPMX19_00034 0.61 -1.4 39,540 + MPMX19_00034 0.63 -0.4 39,540 + MPMX19_00034 0.63 -0.2 39,540 + MPMX19_00034 0.63 +0.6 39,540 + MPMX19_00034 0.63 +1.6 39,540 + MPMX19_00034 0.63 +0.0 39,540 + MPMX19_00034 0.63 -0.1 39,540 + MPMX19_00034 0.63 +0.4 39,540 + MPMX19_00034 0.63 +1.8 39,540 + MPMX19_00034 0.63 +0.2 39,540 + MPMX19_00034 0.63 -3.5 39,540 + MPMX19_00034 0.63 +0.5 39,540 + MPMX19_00034 0.63 -1.0 39,540 + MPMX19_00034 0.63 -0.2 39,540 + MPMX19_00034 0.63 -0.7 39,540 + MPMX19_00034 0.63 -0.6 39,540 + MPMX19_00034 0.63 +0.8 39,540 + MPMX19_00034 0.63 +0.1 39,540 + MPMX19_00034 0.63 -0.1 39,540 + MPMX19_00034 0.63 -1.9 39,540 + MPMX19_00034 0.63 -0.5 39,540 + MPMX19_00034 0.63 -0.8 39,540 + MPMX19_00034 0.63 -2.0 39,541 - MPMX19_00034 0.63 -1.2 39,541 - MPMX19_00034 0.63 -2.2 39,541 - MPMX19_00034 0.63 -0.1 39,541 - MPMX19_00034 0.63 -0.6 39,541 - MPMX19_00034 0.63 +0.8 39,541 - MPMX19_00034 0.63 -0.1 39,541 - MPMX19_00034 0.63 +0.6 39,541 - MPMX19_00034 0.63 -0.0 39,541 - MPMX19_00034 0.63 +1.1 39,541 - MPMX19_00034 0.63 -1.1 39,541 - MPMX19_00034 0.63 +0.3 39,541 - MPMX19_00034 0.63 -0.6 39,541 - MPMX19_00034 0.63 -2.6 39,541 - MPMX19_00034 0.63 -0.7 39,541 - MPMX19_00034 0.63 +1.0 39,602 + MPMX19_00034 0.75 -0.8 39,602 + MPMX19_00034 0.75 +0.2 39,602 + MPMX19_00034 0.75 +1.7 39,602 + MPMX19_00034 0.75 -1.8 39,603 - MPMX19_00034 0.76 -0.2 39,603 - MPMX19_00034 0.76 +1.3 39,603 - MPMX19_00034 0.76 -1.2 39,603 - MPMX19_00034 0.76 -2.0 39,603 - MPMX19_00034 0.76 +0.8 39,603 - MPMX19_00034 0.76 -1.2 39,722 + -1.0 39,722 + -0.8 39,734 + +0.3 39,734 + -0.7 39,734 + +0.2 39,734 + -1.1 39,734 + -1.4 39,735 - -1.8 39,735 - +2.4 39,735 - +0.6 39,735 - +0.3 39,735 - -1.2 39,735 - -0.1 39,735 - -0.9 39,906 + MPMX19_00035 0.33 -0.6 39,906 + MPMX19_00035 0.33 +0.0 39,906 + MPMX19_00035 0.33 -1.3 39,906 + MPMX19_00035 0.33 -1.4 39,907 - MPMX19_00035 0.33 +0.5 39,907 - MPMX19_00035 0.33 +0.6 39,953 + MPMX19_00035 0.43 -0.3 39,988 + MPMX19_00035 0.51 -0.4 39,988 + MPMX19_00035 0.51 +0.3 39,988 + MPMX19_00035 0.51 +1.0 39,988 + MPMX19_00035 0.51 -0.3 39,988 + MPMX19_00035 0.51 -1.5 39,988 + MPMX19_00035 0.51 +0.7 39,988 + MPMX19_00035 0.51 -0.8 39,989 - MPMX19_00035 0.51 -0.3 39,989 - MPMX19_00035 0.51 +0.3 39,989 - MPMX19_00035 0.51 -1.2 39,989 - MPMX19_00035 0.51 -0.1 39,989 - MPMX19_00035 0.51 -0.4 39,989 - MPMX19_00035 0.51 -0.2 39,989 - MPMX19_00035 0.51 +0.3 39,989 - MPMX19_00035 0.51 +0.4 39,989 - MPMX19_00035 0.51 +1.6 39,989 - MPMX19_00035 0.51 -0.8 39,989 - MPMX19_00035 0.51 +0.9 39,989 - MPMX19_00035 0.51 -0.2 39,989 - MPMX19_00035 0.51 +0.6 40,015 + MPMX19_00035 0.56 -1.7 40,015 + MPMX19_00035 0.56 -0.7 40,015 + MPMX19_00035 0.56 -0.3 40,015 + MPMX19_00035 0.56 +0.6 40,015 + MPMX19_00035 0.56 -1.0 40,015 + MPMX19_00035 0.56 -0.3 40,016 - MPMX19_00035 0.57 +0.8 40,016 - MPMX19_00035 0.57 +1.0 40,016 - MPMX19_00035 0.57 -1.6 40,016 - MPMX19_00035 0.57 +0.9 40,016 - MPMX19_00035 0.57 +0.0 40,198 + +0.5 40,198 + -0.9 40,199 - +1.3 40,266 + -0.5 40,266 + +0.0 40,267 - -0.1 40,267 - -0.3 40,324 + MPMX19_00036 0.17 +0.6 40,325 - MPMX19_00036 0.17 -2.1 40,325 - MPMX19_00036 0.17 +0.8 40,325 - MPMX19_00036 0.17 -0.7 40,325 - MPMX19_00036 0.17 -0.6 40,325 - MPMX19_00036 0.17 -3.2 40,325 - MPMX19_00036 0.17 -0.6 40,325 - MPMX19_00036 0.17 -0.5 40,325 - MPMX19_00036 0.17 -0.3 40,325 - MPMX19_00036 0.17 -1.8 40,325 - MPMX19_00036 0.17 -1.4 40,325 - MPMX19_00036 0.17 +0.4 40,438 + MPMX19_00036 0.37 -0.7 40,438 + MPMX19_00036 0.37 -0.6 40,439 - MPMX19_00036 0.37 -0.4 40,782 + +0.9 40,782 + -1.6 40,782 + -0.7 40,782 + -0.7 40,782 + -0.4 40,782 + -0.7 40,782 + +0.3 40,783 - -0.4 40,783 - -1.3 40,783 - +0.6 40,783 - -2.5 40,783 - -1.4 40,783 - -1.0 40,959 + MPMX19_00037 0.39 -1.6 40,959 + MPMX19_00037 0.39 +1.8 40,960 - MPMX19_00037 0.39 -1.3 40,960 - MPMX19_00037 0.39 +0.5 40,979 + MPMX19_00037 0.44 +0.3 40,979 + MPMX19_00037 0.44 +0.1 40,979 + MPMX19_00037 0.44 -0.1 40,979 + MPMX19_00037 0.44 -0.4 40,979 + MPMX19_00037 0.44 +0.5 40,980 - MPMX19_00037 0.44 -1.1 40,980 - MPMX19_00037 0.44 -0.7 40,980 - MPMX19_00037 0.44 -1.8 41,016 + MPMX19_00037 0.52 -0.6 41,016 + MPMX19_00037 0.52 -0.6 41,065 + MPMX19_00037 0.63 -1.3 41,065 + MPMX19_00037 0.63 -0.9 41,065 + MPMX19_00037 0.63 -2.6 41,065 + MPMX19_00037 0.63 +0.3 41,066 - MPMX19_00037 0.63 -1.6 41,066 - MPMX19_00037 0.63 -0.1 41,066 - MPMX19_00037 0.63 +0.4 41,086 - MPMX19_00037 0.67 -1.6 41,103 + MPMX19_00037 0.71 -0.3 41,104 - MPMX19_00037 0.71 -2.0 41,104 - MPMX19_00037 0.71 -1.2 41,137 + MPMX19_00037 0.79 -0.2 41,137 + MPMX19_00037 0.79 -2.7 41,137 + MPMX19_00037 0.79 -1.0 41,137 + MPMX19_00037 0.79 -1.7 41,137 + MPMX19_00037 0.79 -1.1 41,137 + MPMX19_00037 0.79 -0.1 41,137 + MPMX19_00037 0.79 -0.1 41,137 + MPMX19_00037 0.79 -0.9 41,137 + MPMX19_00037 0.79 -0.8 41,137 + MPMX19_00037 0.79 +0.5 41,137 + MPMX19_00037 0.79 -0.5 41,137 + MPMX19_00037 0.79 -1.4 41,137 + MPMX19_00037 0.79 +0.2 41,137 + MPMX19_00037 0.79 +0.4 41,137 + MPMX19_00037 0.79 +0.5 41,137 + MPMX19_00037 0.79 -1.4 41,137 + MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 -0.3 41,138 - MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 +0.8 41,138 - MPMX19_00037 0.79 +0.0 41,138 - MPMX19_00037 0.79 -0.7 41,138 - MPMX19_00037 0.79 -1.2 41,138 - MPMX19_00037 0.79 -0.6 41,138 - MPMX19_00037 0.79 -0.6 41,138 - MPMX19_00037 0.79 +0.2 41,138 - MPMX19_00037 0.79 +0.4 41,138 - MPMX19_00037 0.79 +0.0 41,138 - MPMX19_00037 0.79 -0.8 41,153 + MPMX19_00037 0.82 -0.4 41,153 + MPMX19_00037 0.82 -2.0 41,170 + MPMX19_00037 0.86 -1.7 41,170 + MPMX19_00037 0.86 -0.6 41,171 - MPMX19_00037 0.86 -0.7 41,287 + -2.1 41,287 + -0.1 41,287 + -1.6 41,287 + -1.1 41,287 + +0.8 41,287 + +1.8 41,287 + -2.1 41,287 + -0.6 41,287 + -1.7 41,287 + +0.4 41,287 + -1.7 41,287 + -1.6 41,287 + +0.9 41,287 + -1.8 41,287 + +0.3 41,288 - -0.1 41,288 - +0.9 41,288 - -0.6 41,288 - -1.4 41,288 - -1.2 41,314 + -1.2 41,314 + +0.6 41,314 + -0.1 41,314 + -0.8 41,314 + -0.2 41,314 + -1.0 41,315 - -1.3 41,315 - -0.6 41,315 - -0.8 41,315 - +0.6 41,315 - -1.4 41,315 - +1.3 41,315 - +0.0 41,404 + +0.2 41,404 + +1.1 41,404 + -1.2 41,404 + +1.3 41,404 + -1.2 41,404 + -0.4 41,404 + +0.3 41,405 - -0.7 41,405 - +0.8
Or see this region's nucleotide sequence