Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03961 and MIT1002_03962 are separated by 466 nucleotides MIT1002_03962 and MIT1002_03963 are separated by 169 nucleotides
MIT1002_03961: MIT1002_03961 - Phosphoribosylamine--glycine ligase, at 4,444,991 to 4,446,283
_03961
MIT1002_03962: MIT1002_03962 - Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 4,446,750 to 4,447,502
_03962
MIT1002_03963: MIT1002_03963 - hypothetical protein, at 4,447,672 to 4,448,433
_03963
Position (kb) 4446
4447
4448 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 4445.769 kb on - strand, within MIT1002_03961 at 4445.832 kb on + strand, within MIT1002_03961 at 4445.838 kb on + strand, within MIT1002_03961 at 4445.854 kb on - strand, within MIT1002_03961 at 4445.888 kb on + strand, within MIT1002_03961 at 4445.928 kb on - strand, within MIT1002_03961 at 4445.930 kb on - strand, within MIT1002_03961 at 4445.940 kb on - strand, within MIT1002_03961 at 4445.964 kb on + strand, within MIT1002_03961 at 4445.964 kb on + strand, within MIT1002_03961 at 4445.983 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.988 kb on + strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4445.996 kb on - strand, within MIT1002_03961 at 4446.015 kb on - strand, within MIT1002_03961 at 4446.073 kb on - strand, within MIT1002_03961 at 4446.099 kb on - strand, within MIT1002_03961 at 4446.101 kb on + strand, within MIT1002_03961 at 4446.121 kb on + strand, within MIT1002_03961 at 4446.123 kb on + strand, within MIT1002_03961 at 4446.131 kb on - strand, within MIT1002_03961 at 4446.160 kb on - strand at 4446.189 kb on + strand at 4446.199 kb on + strand at 4446.199 kb on + strand at 4446.207 kb on - strand at 4446.214 kb on + strand at 4446.214 kb on + strand at 4446.222 kb on - strand at 4446.234 kb on - strand at 4446.277 kb on - strand at 4446.283 kb on + strand at 4446.318 kb on + strand at 4446.318 kb on + strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.326 kb on - strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.378 kb on + strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.386 kb on - strand at 4446.461 kb on + strand at 4446.469 kb on - strand at 4446.471 kb on - strand at 4446.484 kb on - strand at 4446.515 kb on - strand at 4446.579 kb on + strand at 4446.587 kb on - strand at 4446.604 kb on + strand at 4446.612 kb on - strand at 4446.613 kb on - strand at 4446.694 kb on + strand at 4446.739 kb on + strand at 4446.739 kb on + strand at 4446.764 kb on + strand at 4446.764 kb on + strand at 4446.764 kb on + strand at 4446.765 kb on - strand at 4446.794 kb on + strand at 4446.807 kb on - strand at 4446.837 kb on + strand, within MIT1002_03962 at 4446.872 kb on - strand, within MIT1002_03962 at 4446.873 kb on - strand, within MIT1002_03962 at 4446.927 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4446.985 kb on + strand, within MIT1002_03962 at 4447.003 kb on - strand, within MIT1002_03962 at 4447.003 kb on - strand, within MIT1002_03962 at 4447.038 kb on + strand, within MIT1002_03962 at 4447.119 kb on + strand, within MIT1002_03962 at 4447.129 kb on + strand, within MIT1002_03962 at 4447.185 kb on - strand, within MIT1002_03962 at 4447.251 kb on + strand, within MIT1002_03962 at 4447.263 kb on + strand, within MIT1002_03962 at 4447.263 kb on + strand, within MIT1002_03962 at 4447.270 kb on + strand, within MIT1002_03962 at 4447.271 kb on - strand, within MIT1002_03962 at 4447.351 kb on - strand, within MIT1002_03962 at 4447.386 kb on - strand, within MIT1002_03962 at 4447.465 kb on + strand at 4447.465 kb on + strand at 4447.465 kb on + strand at 4447.473 kb on - strand at 4447.473 kb on - strand at 4447.501 kb on + strand at 4447.524 kb on - strand at 4447.577 kb on - strand at 4447.588 kb on + strand at 4447.690 kb on - strand at 4447.743 kb on - strand at 4447.813 kb on + strand, within MIT1002_03963 at 4447.820 kb on + strand, within MIT1002_03963 at 4447.826 kb on - strand, within MIT1002_03963 at 4447.826 kb on - strand, within MIT1002_03963 at 4447.930 kb on - strand, within MIT1002_03963 at 4447.975 kb on + strand, within MIT1002_03963 at 4447.980 kb on + strand, within MIT1002_03963 at 4447.998 kb on - strand, within MIT1002_03963 at 4448.037 kb on - strand, within MIT1002_03963 at 4448.140 kb on + strand, within MIT1002_03963 at 4448.251 kb on + strand, within MIT1002_03963 at 4448.259 kb on - strand, within MIT1002_03963 at 4448.311 kb on + strand, within MIT1002_03963 at 4448.311 kb on + strand, within MIT1002_03963 at 4448.319 kb on - strand, within MIT1002_03963 at 4448.351 kb on + strand, within MIT1002_03963 at 4448.359 kb on - strand at 4448.391 kb on + strand at 4448.399 kb on - strand at 4448.399 kb on - strand at 4448.406 kb on - strand at 4448.406 kb on - strand at 4448.406 kb on - strand at 4448.410 kb on + strand at 4448.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2 remove 4,445,769 - MIT1002_03961 0.60 -4.1 4,445,832 + MIT1002_03961 0.65 -6.7 4,445,838 + MIT1002_03961 0.66 -1.3 4,445,854 - MIT1002_03961 0.67 -6.0 4,445,888 + MIT1002_03961 0.69 -1.3 4,445,928 - MIT1002_03961 0.72 -4.7 4,445,930 - MIT1002_03961 0.73 -1.7 4,445,940 - MIT1002_03961 0.73 -3.6 4,445,964 + MIT1002_03961 0.75 -3.2 4,445,964 + MIT1002_03961 0.75 -4.6 4,445,983 + MIT1002_03961 0.77 -3.9 4,445,988 + MIT1002_03961 0.77 -3.3 4,445,988 + MIT1002_03961 0.77 -3.9 4,445,988 + MIT1002_03961 0.77 -7.8 4,445,988 + MIT1002_03961 0.77 -5.4 4,445,988 + MIT1002_03961 0.77 -4.9 4,445,988 + MIT1002_03961 0.77 -2.4 4,445,996 - MIT1002_03961 0.78 -5.5 4,445,996 - MIT1002_03961 0.78 -5.3 4,445,996 - MIT1002_03961 0.78 -3.4 4,445,996 - MIT1002_03961 0.78 -2.9 4,445,996 - MIT1002_03961 0.78 -2.8 4,446,015 - MIT1002_03961 0.79 -4.3 4,446,073 - MIT1002_03961 0.84 -2.4 4,446,099 - MIT1002_03961 0.86 -4.3 4,446,101 + MIT1002_03961 0.86 -5.4 4,446,121 + MIT1002_03961 0.87 -5.2 4,446,123 + MIT1002_03961 0.88 -5.5 4,446,131 - MIT1002_03961 0.88 -3.1 4,446,160 - -5.8 4,446,189 + -6.6 4,446,199 + -2.9 4,446,199 + -1.7 4,446,207 - -4.8 4,446,214 + -4.6 4,446,214 + -1.3 4,446,222 - -2.5 4,446,234 - -5.4 4,446,277 - -3.8 4,446,283 + +1.3 4,446,318 + +0.7 4,446,318 + +1.1 4,446,326 - -0.1 4,446,326 - -0.6 4,446,326 - -1.5 4,446,326 - +0.4 4,446,326 - +0.4 4,446,326 - -1.7 4,446,326 - +1.8 4,446,378 + +0.1 4,446,378 + +0.6 4,446,378 + +0.3 4,446,378 + +1.5 4,446,378 + +0.5 4,446,378 + +0.1 4,446,378 + -1.5 4,446,378 + +0.4 4,446,378 + +1.1 4,446,386 - +0.0 4,446,386 - +0.5 4,446,386 - +1.2 4,446,386 - -1.1 4,446,386 - -0.7 4,446,386 - +0.9 4,446,386 - -2.4 4,446,386 - +1.9 4,446,386 - -2.5 4,446,386 - +0.2 4,446,461 + -0.4 4,446,469 - +1.9 4,446,471 - +2.6 4,446,484 - +1.0 4,446,515 - -2.5 4,446,579 + +0.6 4,446,587 - +0.2 4,446,604 + -0.9 4,446,612 - -0.9 4,446,613 - -3.1 4,446,694 + +0.9 4,446,739 + +0.2 4,446,739 + -0.1 4,446,764 + -0.6 4,446,764 + +0.5 4,446,764 + +0.1 4,446,765 - +0.4 4,446,794 + +1.0 4,446,807 - +0.0 4,446,837 + MIT1002_03962 0.12 +0.2 4,446,872 - MIT1002_03962 0.16 +1.0 4,446,873 - MIT1002_03962 0.16 -0.4 4,446,927 + MIT1002_03962 0.24 +0.1 4,446,985 + MIT1002_03962 0.31 +0.7 4,446,985 + MIT1002_03962 0.31 +1.2 4,446,985 + MIT1002_03962 0.31 +0.1 4,447,003 - MIT1002_03962 0.34 +1.2 4,447,003 - MIT1002_03962 0.34 +0.2 4,447,038 + MIT1002_03962 0.38 +0.2 4,447,119 + MIT1002_03962 0.49 -0.4 4,447,129 + MIT1002_03962 0.50 +1.1 4,447,185 - MIT1002_03962 0.58 -1.4 4,447,251 + MIT1002_03962 0.67 -0.2 4,447,263 + MIT1002_03962 0.68 -1.5 4,447,263 + MIT1002_03962 0.68 -1.3 4,447,270 + MIT1002_03962 0.69 +0.7 4,447,271 - MIT1002_03962 0.69 +0.5 4,447,351 - MIT1002_03962 0.80 -0.3 4,447,386 - MIT1002_03962 0.84 +0.3 4,447,465 + +0.1 4,447,465 + -0.6 4,447,465 + +1.0 4,447,473 - +0.1 4,447,473 - -0.4 4,447,501 + -0.7 4,447,524 - +1.1 4,447,577 - +0.3 4,447,588 + +0.5 4,447,690 - +0.4 4,447,743 - -1.1 4,447,813 + MIT1002_03963 0.19 -2.4 4,447,820 + MIT1002_03963 0.19 +0.9 4,447,826 - MIT1002_03963 0.20 +1.7 4,447,826 - MIT1002_03963 0.20 +0.2 4,447,930 - MIT1002_03963 0.34 +1.9 4,447,975 + MIT1002_03963 0.40 +1.2 4,447,980 + MIT1002_03963 0.40 -0.2 4,447,998 - MIT1002_03963 0.43 -0.9 4,448,037 - MIT1002_03963 0.48 -0.5 4,448,140 + MIT1002_03963 0.61 -1.4 4,448,251 + MIT1002_03963 0.76 -1.4 4,448,259 - MIT1002_03963 0.77 +1.3 4,448,311 + MIT1002_03963 0.84 +0.5 4,448,311 + MIT1002_03963 0.84 -0.1 4,448,319 - MIT1002_03963 0.85 -1.3 4,448,351 + MIT1002_03963 0.89 +0.1 4,448,359 - +0.4 4,448,391 + -0.1 4,448,399 - +0.4 4,448,399 - -1.1 4,448,406 - +2.4 4,448,406 - -0.1 4,448,406 - -1.3 4,448,410 + -0.5 4,448,426 - +0.7
Or see this region's nucleotide sequence