Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03885

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
4,347,998	-		MIT1002_03883	0.37	-0.8
4,348,060	+		MIT1002_03883	0.48	-0.0
4,348,067	-		MIT1002_03883	0.50	+0.1
4,348,067	-		MIT1002_03883	0.50	-0.8
4,348,076	-		MIT1002_03883	0.52	-1.0
4,348,297	+				+0.6
4,348,361	+				-0.3
4,348,361	+				-1.3
4,348,361	+				-2.7
4,348,367	+				-0.4
4,348,367	+				-1.7
4,348,375	-				+0.1
4,348,375	-				+0.1
4,348,392	-				-0.2
4,348,398	-				-3.2
4,348,439	+		MIT1002_03884	0.15	+0.8
4,348,468	+		MIT1002_03884	0.20	+1.3
4,348,476	-		MIT1002_03884	0.22	-0.2
4,348,478	+		MIT1002_03884	0.22	+0.2
4,348,479	+		MIT1002_03884	0.22	-0.7
4,348,545	-		MIT1002_03884	0.34	+0.5
4,348,600	-		MIT1002_03884	0.43	-0.1
4,348,614	+		MIT1002_03884	0.46	-1.4
4,348,614	+		MIT1002_03884	0.46	-0.3
4,348,614	-		MIT1002_03884	0.46	-0.2
4,348,622	-		MIT1002_03884	0.47	-0.2
4,348,622	-		MIT1002_03884	0.47	-0.7
4,348,622	-		MIT1002_03884	0.47	+0.8
4,348,622	-		MIT1002_03884	0.47	+0.1
4,348,646	+		MIT1002_03884	0.51	-0.1
4,348,696	+		MIT1002_03884	0.60	+0.1
4,348,785	+		MIT1002_03884	0.76	+0.5
4,348,785	-		MIT1002_03884	0.76	+0.1
4,348,785	-		MIT1002_03884	0.76	+0.2
4,348,802	+		MIT1002_03884	0.79	+0.5
4,348,815	+		MIT1002_03884	0.81	-0.6
4,348,886	+				+0.1
4,348,894	-				-0.0
4,348,899	+				-0.1
4,349,018	-				-4.3
4,349,018	-				-4.9
4,349,057	-				-2.5
4,349,101	-				-2.6
4,349,152	+		MIT1002_03885	0.12	-2.8
4,349,160	-		MIT1002_03885	0.13	-3.2
4,349,173	+		MIT1002_03885	0.14	-4.9
4,349,173	+		MIT1002_03885	0.14	-1.6
4,349,181	-		MIT1002_03885	0.14	-3.8
4,349,181	-		MIT1002_03885	0.14	-4.2
4,349,188	+		MIT1002_03885	0.15	-1.3
4,349,254	+		MIT1002_03885	0.20	-2.3
4,349,468	+		MIT1002_03885	0.37	-5.7
4,349,468	+		MIT1002_03885	0.37	-1.6
4,349,469	-		MIT1002_03885	0.37	-3.9
4,349,499	-		MIT1002_03885	0.39	-5.0
4,349,560	+		MIT1002_03885	0.44	-1.6
4,349,585	+		MIT1002_03885	0.46	-3.8
4,349,684	+		MIT1002_03885	0.53	-5.1
4,349,756	-		MIT1002_03885	0.59	-1.6
4,349,756	-		MIT1002_03885	0.59	-2.6
4,349,805	-		MIT1002_03885	0.63	-4.1
4,349,855	+		MIT1002_03885	0.66	-1.6
4,349,873	-		MIT1002_03885	0.68	-0.9
4,349,892	+		MIT1002_03885	0.69	-3.7
4,349,926	-		MIT1002_03885	0.72	-3.9
4,349,975	+		MIT1002_03885	0.76	-3.0
4,350,031	-		MIT1002_03885	0.80	-2.2
4,350,099	+		MIT1002_03885	0.85	-3.6
4,350,099	+		MIT1002_03885	0.85	-2.7
4,350,117	-		MIT1002_03885	0.87	-1.1
4,350,290	+				-0.7
4,350,322	+				-2.5
4,350,322	+				-2.8
4,350,322	+				-2.3
4,350,346	-				-2.8
4,350,346	-				-1.1
4,350,346	-				+0.5
4,350,346	-				-1.7
4,350,363	-				-0.7
4,350,380	+				-5.4
4,350,383	-				-1.5
4,350,532	-				+1.8
4,350,573	-				+0.9
4,350,646	+				+0.3
4,350,651	+				+0.8
4,350,651	+				+0.5
4,350,651	+				+1.1
4,350,659	+				+0.7
4,350,659	-				+0.0
4,350,659	-				+0.1
4,350,723	+		MIT1002_03886	0.12	+0.4
4,350,743	+		MIT1002_03886	0.13	-0.3
4,350,784	+		MIT1002_03886	0.15	-1.3
4,350,784	+		MIT1002_03886	0.15	+1.6
4,350,786	+		MIT1002_03886	0.15	-3.9
4,350,817	+		MIT1002_03886	0.17	-0.4
4,350,825	-		MIT1002_03886	0.17	-0.8
4,350,825	-		MIT1002_03886	0.17	+0.8
4,350,829	-		MIT1002_03886	0.17	+0.5
4,350,885	+		MIT1002_03886	0.20	+0.5
4,350,886	-		MIT1002_03886	0.20	+0.5
4,350,886	-		MIT1002_03886	0.20	-0.9
4,350,904	-		MIT1002_03886	0.21	+1.2
4,350,909	-		MIT1002_03886	0.21	+0.2
4,350,917	-		MIT1002_03886	0.21	+1.3
4,350,918	+		MIT1002_03886	0.21	+0.2
4,350,924	-		MIT1002_03886	0.22	-1.1
4,350,934	-		MIT1002_03886	0.22	+0.0
4,350,998	+		MIT1002_03886	0.25	-0.3
4,351,012	-		MIT1002_03886	0.26	+1.0
4,351,083	+		MIT1002_03886	0.29	+0.3
4,351,088	+		MIT1002_03886	0.30	-0.8
4,351,090	-		MIT1002_03886	0.30	-0.3
4,351,090	-		MIT1002_03886	0.30	+0.3
4,351,112	-		MIT1002_03886	0.31	-0.1
4,351,116	+		MIT1002_03886	0.31	-0.2
4,351,138	+		MIT1002_03886	0.32	+0.1
4,351,155	-		MIT1002_03886	0.33	-0.7
4,351,169	-		MIT1002_03886	0.34	+0.3
4,351,206	-		MIT1002_03886	0.35	+1.1
4,351,242	-		MIT1002_03886	0.37	-0.1
4,351,253	+		MIT1002_03886	0.38	-4.0