Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03702

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03701 and MIT1002_03702 are separated by 94 nucleotidesMIT1002_03702 and MIT1002_03703 are separated by 308 nucleotides MIT1002_03701: MIT1002_03701 - Transcriptional regulatory protein CreB, at 4,133,135 to 4,133,824 _03701 MIT1002_03702: MIT1002_03702 - Signal transduction histidine-protein kinase BaeS, at 4,133,919 to 4,136,054 _03702 MIT1002_03703: MIT1002_03703 - hypothetical protein, at 4,136,363 to 4,137,049 _03703 Position (kb) 4133 4134 4135 4136 4137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4132.981 kb on + strandat 4132.986 kb on - strandat 4133.020 kb on + strandat 4133.045 kb on + strandat 4133.053 kb on - strandat 4133.089 kb on + strandat 4133.089 kb on + strandat 4133.099 kb on - strandat 4133.134 kb on - strandat 4133.209 kb on + strand, within MIT1002_03701at 4133.212 kb on - strand, within MIT1002_03701at 4133.212 kb on - strand, within MIT1002_03701at 4133.217 kb on - strand, within MIT1002_03701at 4133.233 kb on + strand, within MIT1002_03701at 4133.234 kb on - strand, within MIT1002_03701at 4133.241 kb on - strand, within MIT1002_03701at 4133.247 kb on - strand, within MIT1002_03701at 4133.266 kb on + strand, within MIT1002_03701at 4133.321 kb on + strand, within MIT1002_03701at 4133.322 kb on + strand, within MIT1002_03701at 4133.330 kb on - strand, within MIT1002_03701at 4133.330 kb on - strand, within MIT1002_03701at 4133.330 kb on - strand, within MIT1002_03701at 4133.330 kb on - strand, within MIT1002_03701at 4133.451 kb on - strand, within MIT1002_03701at 4133.497 kb on - strand, within MIT1002_03701at 4133.504 kb on + strand, within MIT1002_03701at 4133.621 kb on - strand, within MIT1002_03701at 4133.631 kb on - strand, within MIT1002_03701at 4133.680 kb on + strand, within MIT1002_03701at 4133.807 kb on - strandat 4133.840 kb on + strandat 4133.845 kb on + strandat 4133.868 kb on + strandat 4133.922 kb on - strandat 4133.941 kb on - strandat 4133.943 kb on + strandat 4133.953 kb on + strandat 4133.958 kb on + strandat 4133.958 kb on + strandat 4133.959 kb on - strandat 4133.966 kb on - strandat 4134.000 kb on + strandat 4134.040 kb on + strandat 4134.048 kb on - strandat 4134.048 kb on - strandat 4134.048 kb on - strandat 4134.112 kb on - strandat 4134.112 kb on - strandat 4134.219 kb on + strand, within MIT1002_03702at 4134.224 kb on + strand, within MIT1002_03702at 4134.268 kb on + strand, within MIT1002_03702at 4134.316 kb on - strand, within MIT1002_03702at 4134.352 kb on + strand, within MIT1002_03702at 4134.352 kb on - strand, within MIT1002_03702at 4134.375 kb on - strand, within MIT1002_03702at 4134.456 kb on - strand, within MIT1002_03702at 4134.503 kb on - strand, within MIT1002_03702at 4134.513 kb on + strand, within MIT1002_03702at 4134.521 kb on - strand, within MIT1002_03702at 4134.521 kb on - strand, within MIT1002_03702at 4134.543 kb on + strand, within MIT1002_03702at 4134.558 kb on - strand, within MIT1002_03702at 4134.558 kb on - strand, within MIT1002_03702at 4134.609 kb on + strand, within MIT1002_03702at 4134.620 kb on - strand, within MIT1002_03702at 4134.631 kb on + strand, within MIT1002_03702at 4134.639 kb on - strand, within MIT1002_03702at 4134.641 kb on + strand, within MIT1002_03702at 4134.649 kb on - strand, within MIT1002_03702at 4134.686 kb on - strand, within MIT1002_03702at 4134.688 kb on - strand, within MIT1002_03702at 4134.738 kb on - strand, within MIT1002_03702at 4134.752 kb on + strand, within MIT1002_03702at 4134.752 kb on + strand, within MIT1002_03702at 4134.752 kb on + strand, within MIT1002_03702at 4134.760 kb on - strand, within MIT1002_03702at 4134.775 kb on + strand, within MIT1002_03702at 4134.778 kb on - strand, within MIT1002_03702at 4134.795 kb on + strand, within MIT1002_03702at 4134.922 kb on - strand, within MIT1002_03702at 4135.033 kb on + strand, within MIT1002_03702at 4135.040 kb on + strand, within MIT1002_03702at 4135.041 kb on - strand, within MIT1002_03702at 4135.041 kb on - strand, within MIT1002_03702at 4135.048 kb on - strand, within MIT1002_03702at 4135.075 kb on + strand, within MIT1002_03702at 4135.125 kb on - strand, within MIT1002_03702at 4135.138 kb on + strand, within MIT1002_03702at 4135.170 kb on + strand, within MIT1002_03702at 4135.192 kb on + strand, within MIT1002_03702at 4135.197 kb on + strand, within MIT1002_03702at 4135.200 kb on - strand, within MIT1002_03702at 4135.255 kb on - strand, within MIT1002_03702at 4135.305 kb on - strand, within MIT1002_03702at 4135.362 kb on + strand, within MIT1002_03702at 4135.367 kb on + strand, within MIT1002_03702at 4135.370 kb on - strand, within MIT1002_03702at 4135.421 kb on + strand, within MIT1002_03702at 4135.508 kb on + strand, within MIT1002_03702at 4135.512 kb on + strand, within MIT1002_03702at 4135.541 kb on - strand, within MIT1002_03702at 4135.566 kb on + strand, within MIT1002_03702at 4135.569 kb on - strand, within MIT1002_03702at 4135.587 kb on + strand, within MIT1002_03702at 4135.596 kb on + strand, within MIT1002_03702at 4135.716 kb on - strand, within MIT1002_03702at 4135.722 kb on + strand, within MIT1002_03702at 4135.792 kb on + strand, within MIT1002_03702at 4135.792 kb on + strand, within MIT1002_03702at 4135.792 kb on + strand, within MIT1002_03702at 4135.792 kb on + strand, within MIT1002_03702at 4135.800 kb on + strand, within MIT1002_03702at 4135.800 kb on - strand, within MIT1002_03702at 4135.800 kb on - strand, within MIT1002_03702at 4135.805 kb on + strand, within MIT1002_03702at 4135.831 kb on - strand, within MIT1002_03702at 4135.864 kb on + strandat 4135.879 kb on + strandat 4135.883 kb on - strandat 4135.895 kb on - strandat 4135.946 kb on + strandat 4135.946 kb on - strandat 4135.972 kb on - strandat 4136.014 kb on + strandat 4136.022 kb on + strandat 4136.028 kb on - strandat 4136.103 kb on - strandat 4136.137 kb on + strandat 4136.137 kb on + strandat 4136.137 kb on + strandat 4136.145 kb on - strandat 4136.145 kb on - strandat 4136.145 kb on - strandat 4136.145 kb on - strandat 4136.156 kb on + strandat 4136.157 kb on + strandat 4136.252 kb on + strandat 4136.260 kb on - strandat 4136.319 kb on + strandat 4136.355 kb on + strandat 4136.535 kb on + strand, within MIT1002_03703at 4136.543 kb on - strand, within MIT1002_03703at 4136.543 kb on - strand, within MIT1002_03703at 4136.555 kb on - strand, within MIT1002_03703at 4136.714 kb on - strand, within MIT1002_03703at 4136.770 kb on + strand, within MIT1002_03703at 4136.805 kb on + strand, within MIT1002_03703at 4136.815 kb on + strand, within MIT1002_03703at 4136.825 kb on - strand, within MIT1002_03703at 4136.825 kb on - strand, within MIT1002_03703at 4136.828 kb on - strand, within MIT1002_03703at 4136.836 kb on - strand, within MIT1002_03703at 4136.875 kb on - strand, within MIT1002_03703at 4136.894 kb on + strand, within MIT1002_03703at 4136.897 kb on - strand, within MIT1002_03703at 4136.902 kb on - strand, within MIT1002_03703at 4136.902 kb on - strand, within MIT1002_03703at 4136.906 kb on + strand, within MIT1002_03703at 4136.906 kb on + strand, within MIT1002_03703at 4136.906 kb on + strand, within MIT1002_03703at 4136.906 kb on + strand, within MIT1002_03703at 4136.906 kb on + strand, within MIT1002_03703at 4136.907 kb on - strand, within MIT1002_03703at 4136.913 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.914 kb on - strand, within MIT1002_03703at 4136.928 kb on + strand, within MIT1002_03703at 4136.933 kb on + strand, within MIT1002_03703at 4136.950 kb on - strand, within MIT1002_03703at 4136.950 kb on - strand, within MIT1002_03703at 4136.958 kb on - strand, within MIT1002_03703

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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4,132,981 + -0.3
4,132,986 - +0.0
4,133,020 + +0.6
4,133,045 + +2.1
4,133,053 - +0.5
4,133,089 + -1.9
4,133,089 + +0.8
4,133,099 - -1.1
4,133,134 - -0.0
4,133,209 + MIT1002_03701 0.11 +1.6
4,133,212 - MIT1002_03701 0.11 +0.3
4,133,212 - MIT1002_03701 0.11 +0.6
4,133,217 - MIT1002_03701 0.12 -0.1
4,133,233 + MIT1002_03701 0.14 -0.8
4,133,234 - MIT1002_03701 0.14 +0.8
4,133,241 - MIT1002_03701 0.15 +0.5
4,133,247 - MIT1002_03701 0.16 -0.4
4,133,266 + MIT1002_03701 0.19 -2.8
4,133,321 + MIT1002_03701 0.27 -0.3
4,133,322 + MIT1002_03701 0.27 -0.2
4,133,330 - MIT1002_03701 0.28 -0.1
4,133,330 - MIT1002_03701 0.28 +1.1
4,133,330 - MIT1002_03701 0.28 +1.3
4,133,330 - MIT1002_03701 0.28 -0.1
4,133,451 - MIT1002_03701 0.46 +0.7
4,133,497 - MIT1002_03701 0.52 -0.2
4,133,504 + MIT1002_03701 0.53 -1.4
4,133,621 - MIT1002_03701 0.70 +0.9
4,133,631 - MIT1002_03701 0.72 +0.8
4,133,680 + MIT1002_03701 0.79 -0.1
4,133,807 - -0.7
4,133,840 + -0.0
4,133,845 + +0.8
4,133,868 + +0.1
4,133,922 - -0.6
4,133,941 - +0.6
4,133,943 + +0.6
4,133,953 + -0.2
4,133,958 + -0.6
4,133,958 + +0.1
4,133,959 - +0.1
4,133,966 - +0.8
4,134,000 + +0.3
4,134,040 + +0.0
4,134,048 - +0.6
4,134,048 - +0.3
4,134,048 - +1.1
4,134,112 - -0.7
4,134,112 - +0.1
4,134,219 + MIT1002_03702 0.14 +1.0
4,134,224 + MIT1002_03702 0.14 +2.0
4,134,268 + MIT1002_03702 0.16 +1.0
4,134,316 - MIT1002_03702 0.19 +1.6
4,134,352 + MIT1002_03702 0.20 +0.3
4,134,352 - MIT1002_03702 0.20 +0.8
4,134,375 - MIT1002_03702 0.21 -0.3
4,134,456 - MIT1002_03702 0.25 +2.2
4,134,503 - MIT1002_03702 0.27 +1.5
4,134,513 + MIT1002_03702 0.28 -0.1
4,134,521 - MIT1002_03702 0.28 +0.1
4,134,521 - MIT1002_03702 0.28 -1.4
4,134,543 + MIT1002_03702 0.29 -1.6
4,134,558 - MIT1002_03702 0.30 -0.3
4,134,558 - MIT1002_03702 0.30 -1.7
4,134,609 + MIT1002_03702 0.32 +0.6
4,134,620 - MIT1002_03702 0.33 +1.1
4,134,631 + MIT1002_03702 0.33 +0.8
4,134,639 - MIT1002_03702 0.34 -0.4
4,134,641 + MIT1002_03702 0.34 +0.7
4,134,649 - MIT1002_03702 0.34 +0.0
4,134,686 - MIT1002_03702 0.36 +1.0
4,134,688 - MIT1002_03702 0.36 -0.6
4,134,738 - MIT1002_03702 0.38 +0.7
4,134,752 + MIT1002_03702 0.39 +0.8
4,134,752 + MIT1002_03702 0.39 +0.1
4,134,752 + MIT1002_03702 0.39 -1.0
4,134,760 - MIT1002_03702 0.39 -0.4
4,134,775 + MIT1002_03702 0.40 +2.5
4,134,778 - MIT1002_03702 0.40 -0.9
4,134,795 + MIT1002_03702 0.41 +0.2
4,134,922 - MIT1002_03702 0.47 -0.0
4,135,033 + MIT1002_03702 0.52 -0.2
4,135,040 + MIT1002_03702 0.52 -1.5
4,135,041 - MIT1002_03702 0.53 +0.6
4,135,041 - MIT1002_03702 0.53 +1.0
4,135,048 - MIT1002_03702 0.53 -0.6
4,135,075 + MIT1002_03702 0.54 -0.5
4,135,125 - MIT1002_03702 0.56 +0.8
4,135,138 + MIT1002_03702 0.57 -1.1
4,135,170 + MIT1002_03702 0.59 +0.1
4,135,192 + MIT1002_03702 0.60 +0.6
4,135,197 + MIT1002_03702 0.60 +1.0
4,135,200 - MIT1002_03702 0.60 -1.0
4,135,255 - MIT1002_03702 0.63 -0.4
4,135,305 - MIT1002_03702 0.65 -0.9
4,135,362 + MIT1002_03702 0.68 -0.3
4,135,367 + MIT1002_03702 0.68 -1.6
4,135,370 - MIT1002_03702 0.68 +0.5
4,135,421 + MIT1002_03702 0.70 +1.3
4,135,508 + MIT1002_03702 0.74 -0.6
4,135,512 + MIT1002_03702 0.75 +1.2
4,135,541 - MIT1002_03702 0.76 +0.0
4,135,566 + MIT1002_03702 0.77 -1.9
4,135,569 - MIT1002_03702 0.77 -1.5
4,135,587 + MIT1002_03702 0.78 +0.8
4,135,596 + MIT1002_03702 0.79 +1.3
4,135,716 - MIT1002_03702 0.84 +0.6
4,135,722 + MIT1002_03702 0.84 +1.8
4,135,792 + MIT1002_03702 0.88 +0.1
4,135,792 + MIT1002_03702 0.88 -0.1
4,135,792 + MIT1002_03702 0.88 +0.1
4,135,792 + MIT1002_03702 0.88 -0.1
4,135,800 + MIT1002_03702 0.88 +0.6
4,135,800 - MIT1002_03702 0.88 +1.0
4,135,800 - MIT1002_03702 0.88 -1.0
4,135,805 + MIT1002_03702 0.88 +0.9
4,135,831 - MIT1002_03702 0.90 +0.1
4,135,864 + -0.2
4,135,879 + -0.5
4,135,883 - +0.4
4,135,895 - -0.2
4,135,946 + +0.4
4,135,946 - -0.2
4,135,972 - -1.1
4,136,014 + +1.7
4,136,022 + -0.7
4,136,028 - -0.6
4,136,103 - -0.3
4,136,137 + -1.5
4,136,137 + -2.6
4,136,137 + -1.3
4,136,145 - +1.1
4,136,145 - +0.6
4,136,145 - +0.2
4,136,145 - -0.5
4,136,156 + +0.1
4,136,157 + +0.6
4,136,252 + +0.3
4,136,260 - +1.6
4,136,319 + +0.5
4,136,355 + -0.2
4,136,535 + MIT1002_03703 0.25 -0.9
4,136,543 - MIT1002_03703 0.26 +1.1
4,136,543 - MIT1002_03703 0.26 -2.2
4,136,555 - MIT1002_03703 0.28 -1.9
4,136,714 - MIT1002_03703 0.51 +0.1
4,136,770 + MIT1002_03703 0.59 +0.1
4,136,805 + MIT1002_03703 0.64 +0.2
4,136,815 + MIT1002_03703 0.66 +1.1
4,136,825 - MIT1002_03703 0.67 -2.1
4,136,825 - MIT1002_03703 0.67 +0.2
4,136,828 - MIT1002_03703 0.68 -0.7
4,136,836 - MIT1002_03703 0.69 +0.3
4,136,875 - MIT1002_03703 0.75 +0.0
4,136,894 + MIT1002_03703 0.77 +0.6
4,136,897 - MIT1002_03703 0.78 +0.1
4,136,902 - MIT1002_03703 0.78 +2.9
4,136,902 - MIT1002_03703 0.78 +0.5
4,136,906 + MIT1002_03703 0.79 +1.8
4,136,906 + MIT1002_03703 0.79 -0.1
4,136,906 + MIT1002_03703 0.79 +0.3
4,136,906 + MIT1002_03703 0.79 +0.2
4,136,906 + MIT1002_03703 0.79 -2.2
4,136,907 - MIT1002_03703 0.79 -0.4
4,136,913 - MIT1002_03703 0.80 +0.4
4,136,914 - MIT1002_03703 0.80 -2.3
4,136,914 - MIT1002_03703 0.80 +0.4
4,136,914 - MIT1002_03703 0.80 -0.3
4,136,914 - MIT1002_03703 0.80 -0.8
4,136,914 - MIT1002_03703 0.80 +0.6
4,136,914 - MIT1002_03703 0.80 -0.4
4,136,928 + MIT1002_03703 0.82 -1.1
4,136,933 + MIT1002_03703 0.83 +0.1
4,136,950 - MIT1002_03703 0.85 -1.0
4,136,950 - MIT1002_03703 0.85 +1.6
4,136,958 - MIT1002_03703 0.87 +1.0

Or see this region's nucleotide sequence