Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02461

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
2,750,531	+		MIT1002_02460	0.19	-0.1
2,750,531	+		MIT1002_02460	0.19	+0.3
2,750,606	-		MIT1002_02460	0.26	+1.0
2,750,706	+		MIT1002_02460	0.34	-2.4
2,750,706	+		MIT1002_02460	0.34	+1.0
2,750,706	+		MIT1002_02460	0.34	-0.0
2,750,706	+		MIT1002_02460	0.34	-1.2
2,750,706	+		MIT1002_02460	0.34	-0.4
2,750,714	-		MIT1002_02460	0.35	-0.1
2,750,728	+		MIT1002_02460	0.36	+2.0
2,750,729	+		MIT1002_02460	0.36	+2.1
2,750,736	-		MIT1002_02460	0.37	+0.0
2,750,741	+		MIT1002_02460	0.37	+0.4
2,750,755	-		MIT1002_02460	0.39	-0.8
2,750,759	-		MIT1002_02460	0.39	-1.6
2,750,870	-		MIT1002_02460	0.48	+1.1
2,750,883	-		MIT1002_02460	0.50	-0.1
2,750,934	+		MIT1002_02460	0.54	+0.2
2,750,976	-		MIT1002_02460	0.58	+0.3
2,750,999	-		MIT1002_02460	0.60	-0.5
2,751,035	-		MIT1002_02460	0.63	+1.1
2,751,094	-		MIT1002_02460	0.68	+0.7
2,751,117	-		MIT1002_02460	0.70	+0.1
2,751,133	+		MIT1002_02460	0.71	-0.4
2,751,141	-		MIT1002_02460	0.72	+0.2
2,751,296	-		MIT1002_02460	0.85	-0.2
2,751,322	-		MIT1002_02460	0.88	-0.1
2,751,333	+		MIT1002_02460	0.89	+0.1
2,751,385	-				+0.4
2,751,399	-				+0.5
2,751,399	-				+1.8
2,751,590	-				+0.2
2,751,604	+				-0.6
2,751,610	-				-0.6
2,751,620	-				+1.0
2,751,665	+		MIT1002_02461	0.12	-0.0
2,751,685	+		MIT1002_02461	0.14	+1.2
2,751,711	+		MIT1002_02461	0.16	-1.4
2,751,750	+		MIT1002_02461	0.20	+0.3
2,751,847	+		MIT1002_02461	0.29	+0.7
2,751,916	+		MIT1002_02461	0.35	-1.4
2,751,941	+		MIT1002_02461	0.37	-0.4
2,751,944	-		MIT1002_02461	0.37	-0.2
2,751,947	+		MIT1002_02461	0.38	-1.0
2,751,954	-		MIT1002_02461	0.38	+0.4
2,751,987	-		MIT1002_02461	0.41	+0.7
2,751,994	+		MIT1002_02461	0.42	+0.7
2,752,002	-		MIT1002_02461	0.43	+0.2
2,752,016	+		MIT1002_02461	0.44	-1.1
2,752,017	+		MIT1002_02461	0.44	+0.2
2,752,050	+		MIT1002_02461	0.47	-0.3
2,752,072	+		MIT1002_02461	0.49	+0.6
2,752,139	+		MIT1002_02461	0.55	-1.0
2,752,139	+		MIT1002_02461	0.55	-1.0
2,752,147	-		MIT1002_02461	0.56	-0.5
2,752,147	-		MIT1002_02461	0.56	-2.0
2,752,163	+		MIT1002_02461	0.57	+0.0
2,752,221	+		MIT1002_02461	0.62	+2.5
2,752,232	+		MIT1002_02461	0.63	+1.5
2,752,244	+		MIT1002_02461	0.64	-0.1
2,752,269	+		MIT1002_02461	0.67	-0.1
2,752,320	+		MIT1002_02461	0.71	-0.4
2,752,328	-		MIT1002_02461	0.72	-0.5
2,752,331	+		MIT1002_02461	0.72	-0.5
2,752,366	-		MIT1002_02461	0.76	-0.1
2,752,437	-		MIT1002_02461	0.82	+1.0
2,752,446	+		MIT1002_02461	0.83	+0.5
2,752,454	-		MIT1002_02461	0.83	+0.5
2,752,454	-		MIT1002_02461	0.83	-0.5
2,752,499	-		MIT1002_02461	0.88	-0.1
2,752,503	+		MIT1002_02461	0.88	+1.2
2,752,511	-		MIT1002_02461	0.89	+0.4
2,752,528	-				+0.4
2,752,530	+				+0.0
2,752,581	+				+0.4
2,752,589	-				+1.1
2,752,589	-				-1.4
2,752,602	+				+0.1
2,752,609	+				-1.6
2,752,610	-				-1.0
2,752,610	-				-0.1
2,752,725	-				-0.6
2,752,739	+				-0.7
2,752,755	+				+0.1
2,752,755	+				+0.0
2,752,774	-				-2.0
2,752,941	+				+0.3
2,752,950	+				-0.3
2,753,006	-		MIT1002_02462	0.12	-0.2
2,753,044	+		MIT1002_02462	0.14	-0.2
2,753,063	-		MIT1002_02462	0.15	-0.9
2,753,096	-		MIT1002_02462	0.17	+0.4
2,753,167	+		MIT1002_02462	0.20	-0.4
2,753,208	+		MIT1002_02462	0.23	-1.3
2,753,230	-		MIT1002_02462	0.24	-0.1
2,753,232	+		MIT1002_02462	0.24	+0.2
2,753,267	+		MIT1002_02462	0.26	-0.5
2,753,338	+		MIT1002_02462	0.29	+0.1
2,753,346	-		MIT1002_02462	0.30	-0.6
2,753,346	-		MIT1002_02462	0.30	+0.1
2,753,361	+		MIT1002_02462	0.31	+0.1
2,753,381	-		MIT1002_02462	0.32	+1.4
2,753,511	-		MIT1002_02462	0.39	-0.3
2,753,518	-		MIT1002_02462	0.39	-1.2
2,753,592	-		MIT1002_02462	0.43	+0.6