Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02165

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
2,420,156	-		MIT1002_02164	0.20	+0.5
2,420,158	+		MIT1002_02164	0.20	-3.2
2,420,158	+		MIT1002_02164	0.20	-0.7
2,420,176	-		MIT1002_02164	0.22	-1.2
2,420,198	+		MIT1002_02164	0.25	+1.2
2,420,241	+		MIT1002_02164	0.29	-0.3
2,420,270	-		MIT1002_02164	0.33	-1.6
2,420,292	-		MIT1002_02164	0.35	+0.7
2,420,386	+		MIT1002_02164	0.45	+0.3
2,420,387	-		MIT1002_02164	0.45	+0.6
2,420,394	-		MIT1002_02164	0.46	+0.2
2,420,540	+		MIT1002_02164	0.62	+1.5
2,420,548	-		MIT1002_02164	0.63	-0.6
2,420,548	-		MIT1002_02164	0.63	-0.2
2,420,558	-		MIT1002_02164	0.64	+0.1
2,420,650	+		MIT1002_02164	0.75	+1.1
2,420,650	+		MIT1002_02164	0.75	-0.2
2,420,650	+		MIT1002_02164	0.75	-0.7
2,420,650	+		MIT1002_02164	0.75	-0.2
2,420,658	-		MIT1002_02164	0.75	-0.4
2,420,658	-		MIT1002_02164	0.75	-0.5
2,420,658	-		MIT1002_02164	0.75	+0.8
2,420,746	-		MIT1002_02164	0.85	-0.4
2,420,867	+				-0.4
2,420,868	-				+0.7
2,420,939	-				+0.0
2,420,991	-				-0.4
2,421,038	+				-1.7
2,421,043	+				+0.5
2,421,051	-				+0.1
2,421,064	-				+1.4
2,421,068	+				-0.3
2,421,105	-				+0.0
2,421,135	-				-0.2
2,421,190	+				+0.8
2,421,269	-		MIT1002_02165	0.14	-0.3
2,421,269	-		MIT1002_02165	0.14	+1.1
2,421,376	-		MIT1002_02165	0.21	-0.6
2,421,381	-		MIT1002_02165	0.22	+0.2
2,421,388	-		MIT1002_02165	0.22	+0.5
2,421,409	+		MIT1002_02165	0.24	-0.3
2,421,415	+		MIT1002_02165	0.24	+1.0
2,421,465	+		MIT1002_02165	0.27	-0.3
2,421,467	+		MIT1002_02165	0.28	+0.6
2,421,492	-		MIT1002_02165	0.29	+0.1
2,421,494	+		MIT1002_02165	0.29	+0.1
2,421,551	-		MIT1002_02165	0.33	+0.1
2,421,551	-		MIT1002_02165	0.33	-0.4
2,421,551	-		MIT1002_02165	0.33	+1.1
2,421,597	-		MIT1002_02165	0.36	-1.2
2,421,669	+		MIT1002_02165	0.41	-1.7
2,421,701	-		MIT1002_02165	0.43	+0.6
2,421,777	-		MIT1002_02165	0.49	-0.7
2,421,846	-		MIT1002_02165	0.53	-0.3
2,421,856	+		MIT1002_02165	0.54	-0.3
2,421,895	-		MIT1002_02165	0.57	+2.1
2,421,903	+		MIT1002_02165	0.57	+1.1
2,421,903	+		MIT1002_02165	0.57	+0.4
2,421,911	-		MIT1002_02165	0.58	+0.2
2,421,911	-		MIT1002_02165	0.58	+0.2
2,421,997	-		MIT1002_02165	0.64	-0.2
2,422,012	-		MIT1002_02165	0.65	+0.1
2,422,017	-		MIT1002_02165	0.65	-1.6
2,422,034	-		MIT1002_02165	0.66	-0.9
2,422,036	+		MIT1002_02165	0.66	+0.6
2,422,052	-		MIT1002_02165	0.67	+0.4
2,422,053	+		MIT1002_02165	0.67	+0.5
2,422,053	+		MIT1002_02165	0.67	+0.4
2,422,061	-		MIT1002_02165	0.68	+0.0
2,422,061	-		MIT1002_02165	0.68	+0.1
2,422,061	-		MIT1002_02165	0.68	+0.0
2,422,107	+		MIT1002_02165	0.71	-0.6
2,422,153	-		MIT1002_02165	0.74	+1.8
2,422,169	-		MIT1002_02165	0.75	-0.3
2,422,174	-		MIT1002_02165	0.76	-0.4
2,422,176	+		MIT1002_02165	0.76	-0.8
2,422,226	-		MIT1002_02165	0.79	-0.6
2,422,437	+				-1.4
2,422,445	-				-0.5
2,422,526	+				-0.9
2,422,536	+				-1.8
2,422,536	+				+0.3
2,422,536	+				+0.4
2,422,573	-				-0.1
2,422,855	+				-0.9
2,422,859	+				-0.6
2,422,867	-				-1.3
2,423,023	+				-2.5
2,423,023	+				-0.1
2,423,079	+		MIT1002_02167	0.11	-1.0
2,423,079	+		MIT1002_02167	0.11	+0.7
2,423,079	+		MIT1002_02167	0.11	-1.1
2,423,079	+		MIT1002_02167	0.11	-0.1
2,423,102	+		MIT1002_02167	0.14	+2.1
2,423,126	+		MIT1002_02167	0.18	+0.1
2,423,318	+		MIT1002_02167	0.47	-1.4
2,423,334	+		MIT1002_02167	0.49	+1.0
2,423,342	+		MIT1002_02167	0.50	-0.5
2,423,435	+		MIT1002_02167	0.64	-1.9
2,423,490	+		MIT1002_02167	0.73	-0.7
2,423,497	+		MIT1002_02167	0.74	-0.1