Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02157

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
2,413,529	+		MIT1002_02156	0.43	-0.3
2,413,529	+		MIT1002_02156	0.43	+0.6
2,413,598	+		MIT1002_02156	0.47	-0.4
2,413,658	-		MIT1002_02156	0.52	-0.5
2,413,766	+		MIT1002_02156	0.59	-0.4
2,413,883	-		MIT1002_02156	0.67	+0.5
2,413,955	+		MIT1002_02156	0.72	+0.2
2,414,105	+		MIT1002_02156	0.82	-0.6
2,414,148	+		MIT1002_02156	0.85	-1.2
2,414,156	-		MIT1002_02156	0.86	+0.6
2,414,174	-		MIT1002_02156	0.87	-0.6
2,414,174	-		MIT1002_02156	0.87	-1.5
2,414,186	-		MIT1002_02156	0.88	-1.0
2,414,186	-		MIT1002_02156	0.88	+0.7
2,414,277	-				+0.4
2,414,292	+				-0.9
2,414,292	-				+0.2
2,414,293	-				-1.6
2,414,316	-				+1.1
2,414,317	-				+0.8
2,414,329	+				+1.4
2,414,329	+				+0.9
2,414,337	-				-1.1
2,414,337	-				+0.9
2,414,366	+				+1.2
2,414,366	+				+0.4
2,414,366	+				+0.3
2,414,390	+				-0.6
2,414,390	+				-0.3
2,414,409	+				+0.1
2,414,455	-				-0.8
2,414,468	+				-2.0
2,414,468	+				-0.7
2,414,476	+				+0.3
2,414,476	-				-1.1
2,414,495	-				-0.0
2,414,501	+				-0.2
2,414,501	+				+0.1
2,414,593	-				+0.4
2,414,593	-				-0.5
2,414,612	+		MIT1002_02157	0.12	+0.3
2,414,641	+		MIT1002_02157	0.15	-1.0
2,414,646	+		MIT1002_02157	0.15	-0.2
2,414,654	-		MIT1002_02157	0.16	+1.3
2,414,680	+		MIT1002_02157	0.19	+0.7
2,414,710	+		MIT1002_02157	0.22	+0.3
2,414,788	+		MIT1002_02157	0.31	-0.2
2,414,804	-		MIT1002_02157	0.32	-0.1
2,414,834	+		MIT1002_02157	0.36	+0.3
2,414,834	+		MIT1002_02157	0.36	-0.5
2,414,841	+		MIT1002_02157	0.36	-0.7
2,414,841	+		MIT1002_02157	0.36	-0.3
2,414,852	-		MIT1002_02157	0.38	-0.4
2,414,893	+		MIT1002_02157	0.42	-3.9
2,414,905	+		MIT1002_02157	0.43	-0.3
2,414,905	+		MIT1002_02157	0.43	-0.1
2,414,905	+		MIT1002_02157	0.43	+0.7
2,414,905	+		MIT1002_02157	0.43	-0.0
2,414,913	-		MIT1002_02157	0.44	-0.1
2,414,924	+		MIT1002_02157	0.45	+0.8
2,415,067	+		MIT1002_02157	0.61	+0.3
2,415,075	-		MIT1002_02157	0.62	+0.4
2,415,095	+		MIT1002_02157	0.64	+0.6
2,415,103	-		MIT1002_02157	0.65	+0.1
2,415,125	+		MIT1002_02157	0.67	-0.6
2,415,133	-		MIT1002_02157	0.68	+0.8
2,415,133	-		MIT1002_02157	0.68	-0.1
2,415,141	+		MIT1002_02157	0.69	-0.9
2,415,141	+		MIT1002_02157	0.69	+1.1
2,415,141	+		MIT1002_02157	0.69	-1.7
2,415,149	-		MIT1002_02157	0.70	+0.0
2,415,149	-		MIT1002_02157	0.70	-2.4
2,415,180	+		MIT1002_02157	0.73	-1.0
2,415,180	+		MIT1002_02157	0.73	-0.5
2,415,180	+		MIT1002_02157	0.73	-1.9
2,415,188	-		MIT1002_02157	0.74	+0.2
2,415,290	-		MIT1002_02157	0.85	+0.4
2,415,292	-		MIT1002_02157	0.85	-1.4
2,415,372	+				-0.5
2,415,486	-				-1.2
2,415,570	+				-0.6
2,415,581	+				+0.8
2,415,589	-				+0.4
2,415,600	+				+0.5
2,415,634	+				+0.6
2,415,706	+		MIT1002_02158	0.16	+1.3
2,415,786	+		MIT1002_02158	0.23	-0.7
2,415,794	-		MIT1002_02158	0.24	+1.0
2,415,794	-		MIT1002_02158	0.24	+0.6
2,415,806	-		MIT1002_02158	0.25	+2.0
2,415,820	+		MIT1002_02158	0.27	-0.8
2,415,846	+		MIT1002_02158	0.29	-2.1
2,415,854	-		MIT1002_02158	0.30	+0.4
2,415,891	-		MIT1002_02158	0.33	-0.8
2,415,962	+		MIT1002_02158	0.40	-0.7
2,415,967	+		MIT1002_02158	0.40	-0.5
2,415,967	+		MIT1002_02158	0.40	-2.4
2,415,972	+		MIT1002_02158	0.41	-0.7
2,415,978	-		MIT1002_02158	0.41	+0.2
2,415,980	-		MIT1002_02158	0.42	+0.4
2,415,980	-		MIT1002_02158	0.42	+0.9
2,416,057	+		MIT1002_02158	0.49	+1.3
2,416,072	-		MIT1002_02158	0.50	+1.4
2,416,073	+		MIT1002_02158	0.50	-0.9
2,416,078	+		MIT1002_02158	0.51	+1.1
2,416,083	+		MIT1002_02158	0.51	-0.8
2,416,175	+		MIT1002_02158	0.60	-1.1
2,416,175	+		MIT1002_02158	0.60	+0.9
2,416,184	-		MIT1002_02158	0.61	-2.4
2,416,271	+		MIT1002_02158	0.69	+0.3
2,416,307	+		MIT1002_02158	0.72	+0.2
2,416,338	+		MIT1002_02158	0.75	+0.3
2,416,381	+		MIT1002_02158	0.79	-0.8
2,416,381	+		MIT1002_02158	0.79	-1.4
2,416,381	+		MIT1002_02158	0.79	-0.1
2,416,399	-		MIT1002_02158	0.81	-3.2