Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01080

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
1,186,072	+		MIT1002_01079	0.25	-0.7
1,186,080	-		MIT1002_01079	0.26	-0.9
1,186,174	+		MIT1002_01079	0.35	-2.0
1,186,182	-		MIT1002_01079	0.36	-1.4
1,186,185	+		MIT1002_01079	0.36	-0.1
1,186,185	+		MIT1002_01079	0.36	+0.8
1,186,185	+		MIT1002_01079	0.36	-2.6
1,186,185	+		MIT1002_01079	0.36	-0.2
1,186,185	+		MIT1002_01079	0.36	-0.5
1,186,185	+		MIT1002_01079	0.36	-0.9
1,186,185	+		MIT1002_01079	0.36	+0.8
1,186,185	+		MIT1002_01079	0.36	+0.3
1,186,193	-		MIT1002_01079	0.37	+2.1
1,186,193	-		MIT1002_01079	0.37	+0.2
1,186,193	-		MIT1002_01079	0.37	-0.9
1,186,193	-		MIT1002_01079	0.37	-0.6
1,186,193	-		MIT1002_01079	0.37	-0.7
1,186,193	-		MIT1002_01079	0.37	-0.1
1,186,193	-		MIT1002_01079	0.37	+0.3
1,186,193	-		MIT1002_01079	0.37	-0.4
1,186,236	+		MIT1002_01079	0.41	-0.2
1,186,244	-		MIT1002_01079	0.42	-0.8
1,186,245	-		MIT1002_01079	0.42	+0.2
1,186,246	-		MIT1002_01079	0.42	+0.1
1,186,291	+		MIT1002_01079	0.46	+0.6
1,186,394	+		MIT1002_01079	0.56	+1.1
1,186,394	+		MIT1002_01079	0.56	-1.5
1,186,394	+		MIT1002_01079	0.56	-0.1
1,186,401	+		MIT1002_01079	0.56	-0.7
1,186,402	-		MIT1002_01079	0.56	-0.2
1,186,491	+		MIT1002_01079	0.65	-0.4
1,186,499	-		MIT1002_01079	0.65	-0.8
1,186,520	+		MIT1002_01079	0.67	-0.7
1,186,528	-		MIT1002_01079	0.68	-0.1
1,186,554	-		MIT1002_01079	0.70	-2.2
1,186,579	+		MIT1002_01079	0.73	-1.2
1,186,580	-		MIT1002_01079	0.73	+0.3
1,186,587	-		MIT1002_01079	0.74	+1.0
1,186,654	-		MIT1002_01079	0.80	-0.1
1,186,682	-		MIT1002_01079	0.82	-1.0
1,186,720	-		MIT1002_01079	0.86	+0.7
1,186,753	+		MIT1002_01079	0.89	-1.6
1,186,854	-				-0.3
1,186,893	+				+1.6
1,186,901	-				+0.4
1,186,910	-				+0.3
1,186,913	+				-0.1
1,186,928	+				-1.5
1,186,928	+				-1.7
1,186,928	+				+0.8
1,186,928	+				+0.3
1,186,936	-				-2.3
1,186,958	-				+0.1
1,187,131	-		MIT1002_01080	0.13	+0.7
1,187,206	-		MIT1002_01080	0.22	-0.7
1,187,343	+		MIT1002_01080	0.39	-0.0
1,187,343	+		MIT1002_01080	0.39	+0.1
1,187,343	+		MIT1002_01080	0.39	+0.4
1,187,343	+		MIT1002_01080	0.39	+1.0
1,187,351	-		MIT1002_01080	0.40	+0.4
1,187,351	-		MIT1002_01080	0.40	+0.4
1,187,351	-		MIT1002_01080	0.40	-0.3
1,187,399	-		MIT1002_01080	0.46	+1.9
1,187,399	-		MIT1002_01080	0.46	+1.4
1,187,493	+		MIT1002_01080	0.58	+0.2
1,187,512	+		MIT1002_01080	0.60	-1.6
1,187,512	+		MIT1002_01080	0.60	-1.1
1,187,512	+		MIT1002_01080	0.60	+0.3
1,187,512	+		MIT1002_01080	0.60	+2.9
1,187,515	-		MIT1002_01080	0.61	+0.3
1,187,520	-		MIT1002_01080	0.61	+0.4
1,187,520	-		MIT1002_01080	0.61	-1.1
1,187,520	-		MIT1002_01080	0.61	+0.4
1,187,545	+		MIT1002_01080	0.64	-0.6
1,187,617	+		MIT1002_01080	0.73	+1.3
1,187,625	-		MIT1002_01080	0.74	-0.2
1,187,630	-		MIT1002_01080	0.75	-0.6
1,187,636	-		MIT1002_01080	0.76	-0.2
1,187,708	+		MIT1002_01080	0.85	-0.5
1,187,708	+		MIT1002_01080	0.85	+0.2
1,187,729	+		MIT1002_01080	0.87	+0.5
1,187,952	+				+0.3
1,188,022	+				-1.0
1,188,022	+				+0.9
1,188,096	-				+0.1
1,188,124	-				-0.2
1,188,270	+		MIT1002_01081	0.19	+1.1
1,188,270	+		MIT1002_01081	0.19	+0.6
1,188,270	+		MIT1002_01081	0.19	+1.3
1,188,278	-		MIT1002_01081	0.19	+1.0
1,188,278	-		MIT1002_01081	0.19	+1.1
1,188,283	-		MIT1002_01081	0.20	+1.3
1,188,327	+		MIT1002_01081	0.23	+0.9
1,188,349	-		MIT1002_01081	0.24	-0.2
1,188,453	+		MIT1002_01081	0.31	+0.8
1,188,486	-		MIT1002_01081	0.34	+0.9
1,188,530	-		MIT1002_01081	0.37	+0.2
1,188,575	+		MIT1002_01081	0.40	+0.1
1,188,727	+		MIT1002_01081	0.50	-1.5
1,188,727	+		MIT1002_01081	0.50	-0.9
1,188,735	-		MIT1002_01081	0.51	-0.2
1,188,737	+		MIT1002_01081	0.51	-2.3
1,188,756	+		MIT1002_01081	0.52	+1.1