Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00859

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00857 and MIT1002_00858 are separated by 336 nucleotidesMIT1002_00858 and MIT1002_00859 are separated by 72 nucleotidesMIT1002_00859 and MIT1002_00860 are separated by 240 nucleotides MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206 _00857 MIT1002_00858: MIT1002_00858 - Exonuclease, at 942,543 to 943,040 _00858 MIT1002_00859: MIT1002_00859 - hypothetical protein, at 943,113 to 943,583 _00859 MIT1002_00860: MIT1002_00860 - S-adenosylmethionine synthase, at 943,824 to 944,969 _00860 Position (kb) 943 944Strain fitness (log2 ratio) -2 -1 0 1 2at 942.143 kb on - strandat 942.212 kb on - strandat 942.237 kb on - strandat 942.256 kb on + strandat 942.349 kb on - strandat 942.364 kb on + strandat 942.380 kb on + strandat 942.400 kb on + strandat 942.596 kb on - strand, within MIT1002_00858at 942.610 kb on - strand, within MIT1002_00858at 942.640 kb on + strand, within MIT1002_00858at 942.715 kb on + strand, within MIT1002_00858at 942.715 kb on + strand, within MIT1002_00858at 942.718 kb on - strand, within MIT1002_00858at 942.723 kb on - strand, within MIT1002_00858at 942.728 kb on + strand, within MIT1002_00858at 942.728 kb on - strand, within MIT1002_00858at 942.728 kb on - strand, within MIT1002_00858at 942.823 kb on + strand, within MIT1002_00858at 942.837 kb on - strand, within MIT1002_00858at 942.853 kb on - strand, within MIT1002_00858at 942.880 kb on + strand, within MIT1002_00858at 942.928 kb on + strand, within MIT1002_00858at 943.100 kb on + strandat 943.103 kb on - strandat 943.194 kb on + strand, within MIT1002_00859at 943.194 kb on + strand, within MIT1002_00859at 943.202 kb on - strand, within MIT1002_00859at 943.202 kb on - strand, within MIT1002_00859at 943.224 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.312 kb on + strand, within MIT1002_00859at 943.336 kb on + strand, within MIT1002_00859at 943.344 kb on - strand, within MIT1002_00859at 943.367 kb on - strand, within MIT1002_00859at 943.381 kb on + strand, within MIT1002_00859at 943.387 kb on + strand, within MIT1002_00859at 943.387 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.481 kb on + strand, within MIT1002_00859at 943.486 kb on + strand, within MIT1002_00859at 943.486 kb on + strand, within MIT1002_00859at 943.489 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.494 kb on - strand, within MIT1002_00859at 943.530 kb on - strand, within MIT1002_00859at 943.599 kb on + strandat 943.636 kb on - strandat 943.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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942,143 - -0.5
942,212 - -1.1
942,237 - +0.0
942,256 + -2.0
942,349 - -0.3
942,364 + -0.3
942,380 + +0.6
942,400 + +0.5
942,596 - MIT1002_00858 0.11 -1.3
942,610 - MIT1002_00858 0.13 -0.3
942,640 + MIT1002_00858 0.19 -0.1
942,715 + MIT1002_00858 0.35 -0.2
942,715 + MIT1002_00858 0.35 +0.4
942,718 - MIT1002_00858 0.35 +0.4
942,723 - MIT1002_00858 0.36 -0.9
942,728 + MIT1002_00858 0.37 -0.5
942,728 - MIT1002_00858 0.37 +0.5
942,728 - MIT1002_00858 0.37 +0.8
942,823 + MIT1002_00858 0.56 +0.2
942,837 - MIT1002_00858 0.59 +2.3
942,853 - MIT1002_00858 0.62 +1.0
942,880 + MIT1002_00858 0.68 +1.3
942,928 + MIT1002_00858 0.77 -0.2
943,100 + +0.2
943,103 - +1.4
943,194 + MIT1002_00859 0.17 +1.7
943,194 + MIT1002_00859 0.17 -0.2
943,202 - MIT1002_00859 0.19 +0.7
943,202 - MIT1002_00859 0.19 +0.4
943,224 + MIT1002_00859 0.24 -0.4
943,312 + MIT1002_00859 0.42 -0.3
943,312 + MIT1002_00859 0.42 -1.2
943,312 + MIT1002_00859 0.42 +1.2
943,312 + MIT1002_00859 0.42 -0.3
943,312 + MIT1002_00859 0.42 +0.5
943,336 + MIT1002_00859 0.47 -0.1
943,344 - MIT1002_00859 0.49 +0.8
943,367 - MIT1002_00859 0.54 -1.3
943,381 + MIT1002_00859 0.57 +0.3
943,387 + MIT1002_00859 0.58 -0.3
943,387 + MIT1002_00859 0.58 +1.4
943,481 + MIT1002_00859 0.78 +1.0
943,481 + MIT1002_00859 0.78 -0.0
943,481 + MIT1002_00859 0.78 +0.0
943,486 + MIT1002_00859 0.79 +2.6
943,486 + MIT1002_00859 0.79 -1.0
943,489 - MIT1002_00859 0.80 -0.8
943,494 - MIT1002_00859 0.81 +0.2
943,494 - MIT1002_00859 0.81 +0.6
943,494 - MIT1002_00859 0.81 +1.3
943,530 - MIT1002_00859 0.89 +0.2
943,599 + +1.4
943,636 - +0.4
943,844 + -0.7

Or see this region's nucleotide sequence