Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00711

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00710 and MIT1002_00711 are separated by 16 nucleotidesMIT1002_00711 and MIT1002_00712 are separated by 392 nucleotides MIT1002_00710: MIT1002_00710 - Bicarbonate transport system permease protein CmpB, at 777,754 to 778,749 _00710 MIT1002_00711: MIT1002_00711 - Bicarbonate transport ATP-binding protein CmpD, at 778,766 to 779,668 _00711 MIT1002_00712: MIT1002_00712 - hypothetical protein, at 780,061 to 781,281 _00712 Position (kb) 778 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 777.775 kb on - strandat 777.831 kb on + strandat 777.839 kb on - strandat 777.854 kb on - strand, within MIT1002_00710at 777.856 kb on + strand, within MIT1002_00710at 777.873 kb on + strand, within MIT1002_00710at 777.916 kb on + strand, within MIT1002_00710at 777.955 kb on - strand, within MIT1002_00710at 777.957 kb on + strand, within MIT1002_00710at 777.980 kb on + strand, within MIT1002_00710at 778.089 kb on - strand, within MIT1002_00710at 778.123 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.131 kb on - strand, within MIT1002_00710at 778.373 kb on + strand, within MIT1002_00710at 778.428 kb on - strand, within MIT1002_00710at 778.450 kb on + strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.541 kb on + strand, within MIT1002_00710at 778.571 kb on + strand, within MIT1002_00710at 778.654 kb on - strandat 778.669 kb on - strandat 778.681 kb on + strandat 778.681 kb on + strandat 778.689 kb on - strandat 778.699 kb on - strandat 778.825 kb on + strandat 778.926 kb on - strand, within MIT1002_00711at 778.982 kb on - strand, within MIT1002_00711at 778.990 kb on + strand, within MIT1002_00711at 778.990 kb on + strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 779.030 kb on + strand, within MIT1002_00711at 779.040 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.158 kb on - strand, within MIT1002_00711at 779.158 kb on - strand, within MIT1002_00711at 779.190 kb on + strand, within MIT1002_00711at 779.190 kb on + strand, within MIT1002_00711at 779.198 kb on - strand, within MIT1002_00711at 779.253 kb on - strand, within MIT1002_00711at 779.285 kb on - strand, within MIT1002_00711at 779.302 kb on - strand, within MIT1002_00711at 779.324 kb on + strand, within MIT1002_00711at 779.352 kb on + strand, within MIT1002_00711at 779.466 kb on + strand, within MIT1002_00711at 779.673 kb on + strandat 779.683 kb on + strandat 779.686 kb on - strandat 779.711 kb on - strandat 779.721 kb on - strandat 779.726 kb on + strandat 779.736 kb on + strandat 779.744 kb on - strandat 779.759 kb on + strandat 779.767 kb on - strandat 779.783 kb on - strandat 780.037 kb on + strandat 780.055 kb on + strandat 780.068 kb on - strandat 780.105 kb on + strandat 780.115 kb on + strandat 780.128 kb on - strandat 780.172 kb on - strandat 780.176 kb on + strandat 780.189 kb on - strand, within MIT1002_00712at 780.208 kb on + strand, within MIT1002_00712at 780.216 kb on - strand, within MIT1002_00712at 780.264 kb on - strand, within MIT1002_00712at 780.276 kb on - strand, within MIT1002_00712at 780.287 kb on - strand, within MIT1002_00712at 780.307 kb on + strand, within MIT1002_00712at 780.328 kb on - strand, within MIT1002_00712at 780.345 kb on - strand, within MIT1002_00712at 780.356 kb on + strand, within MIT1002_00712at 780.361 kb on - strand, within MIT1002_00712at 780.363 kb on + strand, within MIT1002_00712at 780.368 kb on + strand, within MIT1002_00712at 780.386 kb on - strand, within MIT1002_00712at 780.404 kb on - strand, within MIT1002_00712at 780.430 kb on - strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.432 kb on + strand, within MIT1002_00712at 780.440 kb on - strand, within MIT1002_00712at 780.440 kb on - strand, within MIT1002_00712at 780.466 kb on - strand, within MIT1002_00712at 780.466 kb on - strand, within MIT1002_00712at 780.572 kb on + strand, within MIT1002_00712at 780.572 kb on + strand, within MIT1002_00712at 780.580 kb on - strand, within MIT1002_00712at 780.580 kb on - strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.582 kb on + strand, within MIT1002_00712at 780.590 kb on - strand, within MIT1002_00712at 780.631 kb on + strand, within MIT1002_00712at 780.664 kb on + strand, within MIT1002_00712at 780.664 kb on + strand, within MIT1002_00712

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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777,775 - +0.2
777,831 + -0.9
777,839 - -0.7
777,854 - MIT1002_00710 0.10 +1.3
777,856 + MIT1002_00710 0.10 -0.3
777,873 + MIT1002_00710 0.12 +0.1
777,916 + MIT1002_00710 0.16 -0.4
777,955 - MIT1002_00710 0.20 -0.8
777,957 + MIT1002_00710 0.20 -0.0
777,980 + MIT1002_00710 0.23 -1.3
778,089 - MIT1002_00710 0.34 -0.1
778,123 + MIT1002_00710 0.37 +1.9
778,125 + MIT1002_00710 0.37 -0.5
778,125 + MIT1002_00710 0.37 +0.2
778,125 + MIT1002_00710 0.37 +0.7
778,131 - MIT1002_00710 0.38 +1.3
778,373 + MIT1002_00710 0.62 +0.9
778,428 - MIT1002_00710 0.68 +2.0
778,450 + MIT1002_00710 0.70 +0.2
778,457 - MIT1002_00710 0.71 -2.3
778,457 - MIT1002_00710 0.71 -0.0
778,541 + MIT1002_00710 0.79 +0.5
778,571 + MIT1002_00710 0.82 -0.1
778,654 - -0.2
778,669 - +1.6
778,681 + +1.4
778,681 + +0.7
778,689 - +0.2
778,699 - -0.7
778,825 + -1.1
778,926 - MIT1002_00711 0.18 +0.4
778,982 - MIT1002_00711 0.24 -0.7
778,990 + MIT1002_00711 0.25 +0.0
778,990 + MIT1002_00711 0.25 -0.3
778,998 - MIT1002_00711 0.26 +0.7
778,998 - MIT1002_00711 0.26 +0.2
778,998 - MIT1002_00711 0.26 +1.4
778,998 - MIT1002_00711 0.26 +0.8
778,998 - MIT1002_00711 0.26 +1.6
779,030 + MIT1002_00711 0.29 -0.3
779,040 + MIT1002_00711 0.30 +0.6
779,130 + MIT1002_00711 0.40 +1.7
779,130 + MIT1002_00711 0.40 -1.3
779,130 + MIT1002_00711 0.40 +0.1
779,130 + MIT1002_00711 0.40 +0.4
779,130 + MIT1002_00711 0.40 +0.4
779,130 + MIT1002_00711 0.40 +0.4
779,130 + MIT1002_00711 0.40 +0.1
779,130 + MIT1002_00711 0.40 +0.5
779,130 + MIT1002_00711 0.40 +0.6
779,130 + MIT1002_00711 0.40 +2.2
779,130 + MIT1002_00711 0.40 +1.3
779,138 - MIT1002_00711 0.41 -0.0
779,138 - MIT1002_00711 0.41 -1.0
779,138 - MIT1002_00711 0.41 -2.6
779,138 - MIT1002_00711 0.41 -1.4
779,138 - MIT1002_00711 0.41 +0.5
779,158 - MIT1002_00711 0.43 -1.4
779,158 - MIT1002_00711 0.43 +0.2
779,190 + MIT1002_00711 0.47 -0.0
779,190 + MIT1002_00711 0.47 +0.2
779,198 - MIT1002_00711 0.48 +1.0
779,253 - MIT1002_00711 0.54 +0.1
779,285 - MIT1002_00711 0.57 -1.6
779,302 - MIT1002_00711 0.59 +0.9
779,324 + MIT1002_00711 0.62 +0.5
779,352 + MIT1002_00711 0.65 +0.2
779,466 + MIT1002_00711 0.78 +0.9
779,673 + +0.9
779,683 + +0.3
779,686 - -3.1
779,711 - +0.6
779,721 - +1.6
779,726 + -2.0
779,736 + -0.6
779,744 - +0.4
779,759 + +0.4
779,767 - +0.1
779,783 - +1.2
780,037 + +0.6
780,055 + -1.4
780,068 - +0.5
780,105 + +0.5
780,115 + -0.5
780,128 - +0.3
780,172 - -1.7
780,176 + +0.1
780,189 - MIT1002_00712 0.10 +0.2
780,208 + MIT1002_00712 0.12 -0.4
780,216 - MIT1002_00712 0.13 +0.1
780,264 - MIT1002_00712 0.17 -0.3
780,276 - MIT1002_00712 0.18 -0.7
780,287 - MIT1002_00712 0.19 -0.3
780,307 + MIT1002_00712 0.20 +0.8
780,328 - MIT1002_00712 0.22 +0.2
780,345 - MIT1002_00712 0.23 +0.6
780,356 + MIT1002_00712 0.24 +0.6
780,361 - MIT1002_00712 0.25 +0.5
780,363 + MIT1002_00712 0.25 +0.2
780,368 + MIT1002_00712 0.25 +0.1
780,386 - MIT1002_00712 0.27 -0.4
780,404 - MIT1002_00712 0.28 +0.1
780,430 - MIT1002_00712 0.30 -1.2
780,432 + MIT1002_00712 0.30 -0.6
780,432 + MIT1002_00712 0.30 +0.7
780,432 + MIT1002_00712 0.30 +0.8
780,432 + MIT1002_00712 0.30 -0.9
780,432 + MIT1002_00712 0.30 +0.1
780,440 - MIT1002_00712 0.31 -0.2
780,440 - MIT1002_00712 0.31 +0.3
780,466 - MIT1002_00712 0.33 -0.2
780,466 - MIT1002_00712 0.33 +0.1
780,572 + MIT1002_00712 0.42 -0.4
780,572 + MIT1002_00712 0.42 -0.8
780,580 - MIT1002_00712 0.43 -0.0
780,580 - MIT1002_00712 0.43 -2.3
780,582 + MIT1002_00712 0.43 -0.3
780,582 + MIT1002_00712 0.43 +0.2
780,582 + MIT1002_00712 0.43 -0.4
780,590 - MIT1002_00712 0.43 -0.3
780,631 + MIT1002_00712 0.47 +0.3
780,664 + MIT1002_00712 0.49 -1.4
780,664 + MIT1002_00712 0.49 -0.2

Or see this region's nucleotide sequence