Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00465

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00461 and MIT1002_00462 are separated by 263 nucleotidesMIT1002_00462 and MIT1002_00463 are separated by 108 nucleotidesMIT1002_00463 and MIT1002_00464 are separated by 15 nucleotidesMIT1002_00464 and MIT1002_00465 are separated by 6 nucleotidesMIT1002_00465 and MIT1002_00466 are separated by 185 nucleotides MIT1002_00461: MIT1002_00461 - Catalase, at 505,626 to 507,101 _00461 MIT1002_00462: MIT1002_00462 - Small integral membrane protein, at 507,365 to 507,532 _00462 MIT1002_00463: MIT1002_00463 - hypothetical protein, at 507,641 to 507,898 _00463 MIT1002_00464: MIT1002_00464 - hypothetical protein, at 507,914 to 508,081 _00464 MIT1002_00465: MIT1002_00465 - monoglyceride lipase, at 508,088 to 508,984 _00465 MIT1002_00466: MIT1002_00466 - Amino-acid acetyltransferase, at 509,170 to 510,480 _00466 Position (kb) 508 509Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 507.209 kb on + strandat 507.271 kb on - strandat 507.312 kb on - strandat 507.365 kb on + strandat 507.551 kb on - strandat 507.577 kb on + strandat 507.585 kb on - strandat 507.595 kb on - strandat 507.618 kb on + strandat 507.645 kb on + strandat 507.657 kb on + strandat 507.665 kb on - strandat 507.665 kb on - strandat 507.677 kb on + strand, within MIT1002_00463at 507.840 kb on + strand, within MIT1002_00463at 507.848 kb on - strand, within MIT1002_00463at 507.854 kb on - strand, within MIT1002_00463at 507.919 kb on - strandat 508.083 kb on - strandat 508.179 kb on + strand, within MIT1002_00465at 508.266 kb on + strand, within MIT1002_00465at 508.361 kb on + strand, within MIT1002_00465at 508.361 kb on + strand, within MIT1002_00465at 508.369 kb on - strand, within MIT1002_00465at 508.466 kb on + strand, within MIT1002_00465at 508.535 kb on + strand, within MIT1002_00465at 508.535 kb on + strand, within MIT1002_00465at 508.543 kb on - strand, within MIT1002_00465at 508.564 kb on + strand, within MIT1002_00465at 508.586 kb on + strand, within MIT1002_00465at 508.586 kb on - strand, within MIT1002_00465at 508.642 kb on - strand, within MIT1002_00465at 508.692 kb on + strand, within MIT1002_00465at 508.782 kb on - strand, within MIT1002_00465at 508.868 kb on - strand, within MIT1002_00465at 508.881 kb on - strand, within MIT1002_00465at 508.905 kb on + strandat 508.966 kb on + strandat 508.966 kb on + strandat 508.966 kb on + strandat 508.966 kb on + strandat 508.974 kb on - strandat 509.101 kb on + strandat 509.175 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.190 kb on + strandat 509.198 kb on - strandat 509.198 kb on - strandat 509.198 kb on - strandat 509.198 kb on - strandat 509.198 kb on - strandat 509.198 kb on - strandat 509.215 kb on - strandat 509.256 kb on + strandat 509.256 kb on + strandat 509.256 kb on + strandat 509.256 kb on + strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.264 kb on - strandat 509.338 kb on + strand, within MIT1002_00466at 509.371 kb on + strand, within MIT1002_00466at 509.386 kb on + strand, within MIT1002_00466at 509.396 kb on - strand, within MIT1002_00466at 509.407 kb on + strand, within MIT1002_00466at 509.407 kb on + strand, within MIT1002_00466at 509.415 kb on - strand, within MIT1002_00466at 509.415 kb on - strand, within MIT1002_00466at 509.420 kb on - strand, within MIT1002_00466at 509.440 kb on + strand, within MIT1002_00466at 509.464 kb on - strand, within MIT1002_00466at 509.483 kb on + strand, within MIT1002_00466at 509.493 kb on + strand, within MIT1002_00466at 509.711 kb on - strand, within MIT1002_00466at 509.795 kb on + strand, within MIT1002_00466at 509.813 kb on - strand, within MIT1002_00466at 509.844 kb on - strand, within MIT1002_00466at 509.847 kb on - strand, within MIT1002_00466at 509.847 kb on - strand, within MIT1002_00466at 509.926 kb on + strand, within MIT1002_00466

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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507,209 + +0.9
507,271 - +1.0
507,312 - -0.1
507,365 + +0.5
507,551 - -0.5
507,577 + +0.2
507,585 - +0.5
507,595 - -2.5
507,618 + -1.7
507,645 + -2.0
507,657 + +0.2
507,665 - +0.0
507,665 - +0.4
507,677 + MIT1002_00463 0.14 -1.1
507,840 + MIT1002_00463 0.77 +0.6
507,848 - MIT1002_00463 0.80 +0.7
507,854 - MIT1002_00463 0.83 +0.9
507,919 - -0.1
508,083 - -0.1
508,179 + MIT1002_00465 0.10 -0.8
508,266 + MIT1002_00465 0.20 +0.6
508,361 + MIT1002_00465 0.30 -1.9
508,361 + MIT1002_00465 0.30 -1.1
508,369 - MIT1002_00465 0.31 +1.0
508,466 + MIT1002_00465 0.42 -0.7
508,535 + MIT1002_00465 0.50 +0.2
508,535 + MIT1002_00465 0.50 +0.3
508,543 - MIT1002_00465 0.51 -0.2
508,564 + MIT1002_00465 0.53 -1.0
508,586 + MIT1002_00465 0.56 -0.5
508,586 - MIT1002_00465 0.56 +0.9
508,642 - MIT1002_00465 0.62 -1.6
508,692 + MIT1002_00465 0.67 +1.3
508,782 - MIT1002_00465 0.77 +1.4
508,868 - MIT1002_00465 0.87 -1.5
508,881 - MIT1002_00465 0.88 +0.2
508,905 + -1.5
508,966 + -0.5
508,966 + -0.5
508,966 + -0.4
508,966 + -0.2
508,974 - +0.3
509,101 + -0.5
509,175 + -0.3
509,190 + +0.2
509,190 + -6.0
509,190 + -5.3
509,190 + -4.6
509,190 + -2.7
509,190 + -1.4
509,190 + -5.5
509,198 - -1.0
509,198 - -4.6
509,198 - -2.1
509,198 - -4.1
509,198 - -6.3
509,198 - -1.1
509,215 - -2.1
509,256 + -5.9
509,256 + -3.7
509,256 + -5.0
509,256 + -0.8
509,264 - -3.8
509,264 - -4.0
509,264 - -2.1
509,264 - -6.9
509,264 - -6.3
509,264 - -0.8
509,264 - -6.3
509,338 + MIT1002_00466 0.13 -4.4
509,371 + MIT1002_00466 0.15 -3.1
509,386 + MIT1002_00466 0.16 -2.4
509,396 - MIT1002_00466 0.17 -4.7
509,407 + MIT1002_00466 0.18 -3.9
509,407 + MIT1002_00466 0.18 -4.2
509,415 - MIT1002_00466 0.19 -5.1
509,415 - MIT1002_00466 0.19 -3.3
509,420 - MIT1002_00466 0.19 -1.6
509,440 + MIT1002_00466 0.21 -3.0
509,464 - MIT1002_00466 0.22 -4.5
509,483 + MIT1002_00466 0.24 -3.4
509,493 + MIT1002_00466 0.25 -4.3
509,711 - MIT1002_00466 0.41 -8.0
509,795 + MIT1002_00466 0.48 -4.0
509,813 - MIT1002_00466 0.49 -4.8
509,844 - MIT1002_00466 0.51 -4.0
509,847 - MIT1002_00466 0.52 -5.6
509,847 - MIT1002_00466 0.52 -2.9
509,926 + MIT1002_00466 0.58 -3.4

Or see this region's nucleotide sequence