Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00420

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00419 and MIT1002_00420 are separated by 183 nucleotidesMIT1002_00420 and MIT1002_00421 are separated by 28 nucleotides MIT1002_00419: MIT1002_00419 - Putative gamma-glutamyltransferase YwrD, at 452,378 to 454,069 _00419 MIT1002_00420: MIT1002_00420 - putative deferrochelatase/peroxidase YfeX, at 454,253 to 455,179 _00420 MIT1002_00421: MIT1002_00421 - Adenylate cyclase 1, at 455,208 to 456,281 _00421 Position (kb) 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1at 453.268 kb on + strand, within MIT1002_00419at 453.287 kb on + strand, within MIT1002_00419at 453.287 kb on + strand, within MIT1002_00419at 453.292 kb on + strand, within MIT1002_00419at 453.295 kb on - strand, within MIT1002_00419at 453.316 kb on - strand, within MIT1002_00419at 453.316 kb on - strand, within MIT1002_00419at 453.358 kb on + strand, within MIT1002_00419at 453.490 kb on + strand, within MIT1002_00419at 453.525 kb on + strand, within MIT1002_00419at 453.574 kb on - strand, within MIT1002_00419at 453.580 kb on - strand, within MIT1002_00419at 453.709 kb on + strand, within MIT1002_00419at 453.719 kb on + strand, within MIT1002_00419at 453.824 kb on + strand, within MIT1002_00419at 453.832 kb on - strand, within MIT1002_00419at 453.832 kb on - strand, within MIT1002_00419at 453.845 kb on + strand, within MIT1002_00419at 453.853 kb on - strand, within MIT1002_00419at 453.858 kb on - strand, within MIT1002_00419at 454.006 kb on + strandat 454.006 kb on + strandat 454.014 kb on - strandat 454.065 kb on + strandat 454.076 kb on - strandat 454.097 kb on + strandat 454.144 kb on + strandat 454.144 kb on - strandat 454.217 kb on + strandat 454.225 kb on - strandat 454.231 kb on + strandat 454.247 kb on - strandat 454.273 kb on + strandat 454.281 kb on - strandat 454.281 kb on - strandat 454.303 kb on + strandat 454.303 kb on + strandat 454.453 kb on + strand, within MIT1002_00420at 454.459 kb on - strand, within MIT1002_00420at 454.590 kb on + strand, within MIT1002_00420at 454.647 kb on + strand, within MIT1002_00420at 454.647 kb on + strand, within MIT1002_00420at 454.665 kb on + strand, within MIT1002_00420at 454.665 kb on + strand, within MIT1002_00420at 454.673 kb on - strand, within MIT1002_00420at 454.680 kb on - strand, within MIT1002_00420at 454.778 kb on - strand, within MIT1002_00420at 454.799 kb on + strand, within MIT1002_00420at 454.807 kb on - strand, within MIT1002_00420at 454.815 kb on - strand, within MIT1002_00420at 454.905 kb on + strand, within MIT1002_00420at 454.912 kb on + strand, within MIT1002_00420at 454.920 kb on - strand, within MIT1002_00420at 454.955 kb on + strand, within MIT1002_00420at 454.982 kb on - strand, within MIT1002_00420at 454.999 kb on - strand, within MIT1002_00420at 455.028 kb on + strand, within MIT1002_00420at 455.028 kb on + strand, within MIT1002_00420at 455.057 kb on - strand, within MIT1002_00420at 455.087 kb on + strandat 455.087 kb on + strandat 455.087 kb on + strandat 455.088 kb on + strandat 455.191 kb on + strandat 455.224 kb on - strandat 455.227 kb on + strandat 455.235 kb on - strandat 455.278 kb on - strandat 455.383 kb on + strand, within MIT1002_00421at 455.388 kb on + strand, within MIT1002_00421at 455.433 kb on + strand, within MIT1002_00421at 455.485 kb on - strand, within MIT1002_00421at 455.485 kb on - strand, within MIT1002_00421at 455.487 kb on + strand, within MIT1002_00421at 455.639 kb on + strand, within MIT1002_00421at 455.639 kb on + strand, within MIT1002_00421at 455.647 kb on - strand, within MIT1002_00421at 455.669 kb on + strand, within MIT1002_00421at 455.684 kb on - strand, within MIT1002_00421at 455.684 kb on - strand, within MIT1002_00421at 455.762 kb on + strand, within MIT1002_00421at 455.775 kb on - strand, within MIT1002_00421at 455.825 kb on + strand, within MIT1002_00421at 455.839 kb on + strand, within MIT1002_00421at 455.847 kb on - strand, within MIT1002_00421at 456.055 kb on - strand, within MIT1002_00421at 456.078 kb on + strand, within MIT1002_00421at 456.098 kb on - strand, within MIT1002_00421at 456.099 kb on - strand, within MIT1002_00421at 456.148 kb on + strand, within MIT1002_00421at 456.156 kb on - strand, within MIT1002_00421

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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453,268 + MIT1002_00419 0.53 +0.1
453,287 + MIT1002_00419 0.54 -2.0
453,287 + MIT1002_00419 0.54 +1.0
453,292 + MIT1002_00419 0.54 +1.3
453,295 - MIT1002_00419 0.54 -0.7
453,316 - MIT1002_00419 0.55 -0.4
453,316 - MIT1002_00419 0.55 +0.4
453,358 + MIT1002_00419 0.58 -0.7
453,490 + MIT1002_00419 0.66 +0.6
453,525 + MIT1002_00419 0.68 +0.3
453,574 - MIT1002_00419 0.71 -1.0
453,580 - MIT1002_00419 0.71 -0.4
453,709 + MIT1002_00419 0.79 +1.0
453,719 + MIT1002_00419 0.79 +0.5
453,824 + MIT1002_00419 0.85 +0.1
453,832 - MIT1002_00419 0.86 +0.2
453,832 - MIT1002_00419 0.86 -0.8
453,845 + MIT1002_00419 0.87 +0.1
453,853 - MIT1002_00419 0.87 -1.2
453,858 - MIT1002_00419 0.87 +0.2
454,006 + -1.1
454,006 + +0.4
454,014 - -0.8
454,065 + +0.6
454,076 - -0.4
454,097 + -0.3
454,144 + +0.5
454,144 - -0.1
454,217 + -0.4
454,225 - +0.9
454,231 + +0.6
454,247 - -0.2
454,273 + -0.4
454,281 - -2.9
454,281 - -0.7
454,303 + +0.8
454,303 + -0.1
454,453 + MIT1002_00420 0.22 -1.0
454,459 - MIT1002_00420 0.22 +0.1
454,590 + MIT1002_00420 0.36 -0.5
454,647 + MIT1002_00420 0.43 -2.5
454,647 + MIT1002_00420 0.43 +0.2
454,665 + MIT1002_00420 0.44 -0.2
454,665 + MIT1002_00420 0.44 +0.1
454,673 - MIT1002_00420 0.45 -0.7
454,680 - MIT1002_00420 0.46 +0.7
454,778 - MIT1002_00420 0.57 -0.2
454,799 + MIT1002_00420 0.59 -0.2
454,807 - MIT1002_00420 0.60 -1.5
454,815 - MIT1002_00420 0.61 -0.6
454,905 + MIT1002_00420 0.70 +1.2
454,912 + MIT1002_00420 0.71 +1.1
454,920 - MIT1002_00420 0.72 -0.8
454,955 + MIT1002_00420 0.76 +1.1
454,982 - MIT1002_00420 0.79 -1.4
454,999 - MIT1002_00420 0.80 -0.4
455,028 + MIT1002_00420 0.84 +0.4
455,028 + MIT1002_00420 0.84 -0.2
455,057 - MIT1002_00420 0.87 -1.4
455,087 + -1.1
455,087 + -0.9
455,087 + -0.4
455,088 + -1.4
455,191 + -1.0
455,224 - -0.2
455,227 + +1.1
455,235 - -2.7
455,278 - +0.9
455,383 + MIT1002_00421 0.16 -1.4
455,388 + MIT1002_00421 0.17 +0.8
455,433 + MIT1002_00421 0.21 +0.9
455,485 - MIT1002_00421 0.26 +0.5
455,485 - MIT1002_00421 0.26 -0.1
455,487 + MIT1002_00421 0.26 +0.3
455,639 + MIT1002_00421 0.40 -0.4
455,639 + MIT1002_00421 0.40 -1.1
455,647 - MIT1002_00421 0.41 -1.8
455,669 + MIT1002_00421 0.43 +0.3
455,684 - MIT1002_00421 0.44 +0.0
455,684 - MIT1002_00421 0.44 +0.0
455,762 + MIT1002_00421 0.52 +0.1
455,775 - MIT1002_00421 0.53 -0.4
455,825 + MIT1002_00421 0.57 +0.3
455,839 + MIT1002_00421 0.59 +0.0
455,847 - MIT1002_00421 0.59 +0.3
456,055 - MIT1002_00421 0.79 +0.3
456,078 + MIT1002_00421 0.81 +0.1
456,098 - MIT1002_00421 0.83 -2.2
456,099 - MIT1002_00421 0.83 +0.5
456,148 + MIT1002_00421 0.88 +0.5
456,156 - MIT1002_00421 0.88 -2.1

Or see this region's nucleotide sequence