Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00248 and MIT1002_00249 are separated by 418 nucleotides MIT1002_00249 and MIT1002_00250 overlap by 1 nucleotides MIT1002_00250 and MIT1002_00251 overlap by 4 nucleotides
MIT1002_00248: MIT1002_00248 - hypothetical protein, at 276,115 to 276,249
_00248
MIT1002_00249: MIT1002_00249 - Protein of unknown function, DUF, at 276,668 to 277,177
_00249
MIT1002_00250: MIT1002_00250 - type I secretion outer membrane protein, TolC family, at 277,177 to 278,541
_00250
MIT1002_00251: MIT1002_00251 - Cation efflux system protein CusB precursor, at 278,538 to 280,556
_00251
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 276.319 kb on + strand at 276.379 kb on + strand at 276.486 kb on - strand at 276.494 kb on - strand at 276.496 kb on + strand at 276.496 kb on + strand at 276.501 kb on + strand at 276.501 kb on + strand at 276.501 kb on + strand at 276.504 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.509 kb on - strand at 276.554 kb on - strand at 276.554 kb on - strand at 276.564 kb on - strand at 276.590 kb on - strand at 276.598 kb on + strand at 276.604 kb on + strand at 276.612 kb on - strand at 276.635 kb on - strand at 276.697 kb on + strand at 276.737 kb on - strand, within MIT1002_00249 at 276.760 kb on - strand, within MIT1002_00249 at 276.770 kb on - strand, within MIT1002_00249 at 276.794 kb on - strand, within MIT1002_00249 at 276.819 kb on - strand, within MIT1002_00249 at 276.819 kb on - strand, within MIT1002_00249 at 276.831 kb on + strand, within MIT1002_00249 at 276.925 kb on + strand, within MIT1002_00249 at 276.974 kb on + strand, within MIT1002_00249 at 277.036 kb on - strand, within MIT1002_00249 at 277.098 kb on - strand, within MIT1002_00249 at 277.133 kb on + strand at 277.141 kb on - strand at 277.156 kb on + strand at 277.158 kb on + strand at 277.158 kb on - strand at 277.313 kb on + strand at 277.316 kb on - strand, within MIT1002_00250 at 277.339 kb on - strand, within MIT1002_00250 at 277.344 kb on - strand, within MIT1002_00250 at 277.349 kb on - strand, within MIT1002_00250 at 277.349 kb on - strand, within MIT1002_00250 at 277.349 kb on - strand, within MIT1002_00250 at 277.434 kb on + strand, within MIT1002_00250 at 277.434 kb on + strand, within MIT1002_00250 at 277.454 kb on - strand, within MIT1002_00250 at 277.523 kb on + strand, within MIT1002_00250 at 277.531 kb on - strand, within MIT1002_00250 at 277.534 kb on + strand, within MIT1002_00250 at 277.534 kb on + strand, within MIT1002_00250 at 277.536 kb on - strand, within MIT1002_00250 at 277.539 kb on + strand, within MIT1002_00250 at 277.539 kb on + strand, within MIT1002_00250 at 277.539 kb on + strand, within MIT1002_00250 at 277.539 kb on + strand, within MIT1002_00250 at 277.539 kb on + strand, within MIT1002_00250 at 277.547 kb on - strand, within MIT1002_00250 at 277.547 kb on - strand, within MIT1002_00250 at 277.616 kb on + strand, within MIT1002_00250 at 277.616 kb on + strand, within MIT1002_00250 at 277.616 kb on + strand, within MIT1002_00250 at 277.616 kb on + strand, within MIT1002_00250 at 277.624 kb on - strand, within MIT1002_00250 at 277.664 kb on - strand, within MIT1002_00250 at 277.690 kb on + strand, within MIT1002_00250 at 277.919 kb on - strand, within MIT1002_00250 at 278.029 kb on - strand, within MIT1002_00250 at 278.069 kb on - strand, within MIT1002_00250 at 278.076 kb on + strand, within MIT1002_00250 at 278.088 kb on + strand, within MIT1002_00250 at 278.192 kb on + strand, within MIT1002_00250 at 278.199 kb on - strand, within MIT1002_00250 at 278.200 kb on - strand, within MIT1002_00250 at 278.200 kb on - strand, within MIT1002_00250 at 278.270 kb on - strand, within MIT1002_00250 at 278.345 kb on + strand, within MIT1002_00250 at 278.370 kb on - strand, within MIT1002_00250 at 278.370 kb on - strand, within MIT1002_00250 at 278.370 kb on - strand, within MIT1002_00250 at 278.370 kb on - strand, within MIT1002_00250 at 278.440 kb on + strand at 278.440 kb on + strand at 278.450 kb on + strand at 278.553 kb on + strand at 278.569 kb on + strand at 278.581 kb on + strand at 278.583 kb on + strand at 278.630 kb on - strand at 278.669 kb on + strand at 278.677 kb on - strand at 278.677 kb on - strand at 278.677 kb on - strand at 278.677 kb on - strand at 278.818 kb on + strand, within MIT1002_00251 at 278.824 kb on + strand, within MIT1002_00251 at 278.841 kb on + strand, within MIT1002_00251 at 278.849 kb on - strand, within MIT1002_00251 at 278.886 kb on + strand, within MIT1002_00251 at 278.889 kb on - strand, within MIT1002_00251 at 278.993 kb on + strand, within MIT1002_00251 at 279.009 kb on - strand, within MIT1002_00251 at 279.023 kb on - strand, within MIT1002_00251 at 279.077 kb on - strand, within MIT1002_00251 at 279.163 kb on + strand, within MIT1002_00251 at 279.180 kb on + strand, within MIT1002_00251 at 279.180 kb on + strand, within MIT1002_00251 at 279.272 kb on + strand, within MIT1002_00251 at 279.272 kb on + strand, within MIT1002_00251 at 279.272 kb on + strand, within MIT1002_00251 at 279.280 kb on - strand, within MIT1002_00251 at 279.280 kb on - strand, within MIT1002_00251 at 279.282 kb on + strand, within MIT1002_00251 at 279.291 kb on - strand, within MIT1002_00251 at 279.400 kb on + strand, within MIT1002_00251 at 279.400 kb on + strand, within MIT1002_00251 at 279.408 kb on - strand, within MIT1002_00251 at 279.408 kb on - strand, within MIT1002_00251 at 279.408 kb on - strand, within MIT1002_00251 at 279.423 kb on - strand, within MIT1002_00251 at 279.423 kb on - strand, within MIT1002_00251 at 279.425 kb on + strand, within MIT1002_00251
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2 remove 276,319 + +0.5 276,379 + +0.8 276,486 - -0.8 276,494 - -0.6 276,496 + -0.3 276,496 + +0.2 276,501 + -2.5 276,501 + -0.6 276,501 + -0.5 276,504 - +0.2 276,509 - -0.1 276,509 - +0.3 276,509 - +0.5 276,509 - -0.6 276,509 - +0.3 276,509 - -0.2 276,554 - -0.9 276,554 - -1.0 276,564 - -3.7 276,590 - -0.1 276,598 + -0.6 276,604 + -1.2 276,612 - -0.4 276,635 - +0.3 276,697 + -2.0 276,737 - MIT1002_00249 0.14 -0.8 276,760 - MIT1002_00249 0.18 -0.2 276,770 - MIT1002_00249 0.20 -0.1 276,794 - MIT1002_00249 0.25 -2.0 276,819 - MIT1002_00249 0.30 +0.8 276,819 - MIT1002_00249 0.30 -0.6 276,831 + MIT1002_00249 0.32 +0.5 276,925 + MIT1002_00249 0.50 -1.6 276,974 + MIT1002_00249 0.60 +0.4 277,036 - MIT1002_00249 0.72 +0.3 277,098 - MIT1002_00249 0.84 +0.1 277,133 + +0.2 277,141 - -0.2 277,156 + -1.9 277,158 + +1.4 277,158 - -0.3 277,313 + -0.5 277,316 - MIT1002_00250 0.10 -0.2 277,339 - MIT1002_00250 0.12 +0.9 277,344 - MIT1002_00250 0.12 -0.9 277,349 - MIT1002_00250 0.13 -1.2 277,349 - MIT1002_00250 0.13 -0.7 277,349 - MIT1002_00250 0.13 +0.2 277,434 + MIT1002_00250 0.19 +0.2 277,434 + MIT1002_00250 0.19 -1.2 277,454 - MIT1002_00250 0.20 -0.8 277,523 + MIT1002_00250 0.25 -1.4 277,531 - MIT1002_00250 0.26 +0.1 277,534 + MIT1002_00250 0.26 +0.2 277,534 + MIT1002_00250 0.26 +0.8 277,536 - MIT1002_00250 0.26 -0.5 277,539 + MIT1002_00250 0.27 +0.1 277,539 + MIT1002_00250 0.27 -2.5 277,539 + MIT1002_00250 0.27 -1.4 277,539 + MIT1002_00250 0.27 -1.3 277,539 + MIT1002_00250 0.27 -0.7 277,547 - MIT1002_00250 0.27 -1.0 277,547 - MIT1002_00250 0.27 +0.3 277,616 + MIT1002_00250 0.32 -0.7 277,616 + MIT1002_00250 0.32 -1.3 277,616 + MIT1002_00250 0.32 +0.6 277,616 + MIT1002_00250 0.32 +1.1 277,624 - MIT1002_00250 0.33 -0.0 277,664 - MIT1002_00250 0.36 -0.4 277,690 + MIT1002_00250 0.38 -0.1 277,919 - MIT1002_00250 0.54 +0.4 278,029 - MIT1002_00250 0.62 -0.9 278,069 - MIT1002_00250 0.65 -1.5 278,076 + MIT1002_00250 0.66 -2.3 278,088 + MIT1002_00250 0.67 -0.1 278,192 + MIT1002_00250 0.74 +0.5 278,199 - MIT1002_00250 0.75 -0.6 278,200 - MIT1002_00250 0.75 +0.6 278,200 - MIT1002_00250 0.75 -0.2 278,270 - MIT1002_00250 0.80 -0.8 278,345 + MIT1002_00250 0.86 -0.5 278,370 - MIT1002_00250 0.87 -1.6 278,370 - MIT1002_00250 0.87 +0.9 278,370 - MIT1002_00250 0.87 -0.3 278,370 - MIT1002_00250 0.87 +0.8 278,440 + -0.5 278,440 + -0.9 278,450 + -0.2 278,553 + +1.4 278,569 + -0.0 278,581 + -0.5 278,583 + -1.1 278,630 - +0.6 278,669 + -0.4 278,677 - -0.7 278,677 - -0.3 278,677 - -2.7 278,677 - +0.4 278,818 + MIT1002_00251 0.14 +0.1 278,824 + MIT1002_00251 0.14 +0.5 278,841 + MIT1002_00251 0.15 +0.2 278,849 - MIT1002_00251 0.15 -0.2 278,886 + MIT1002_00251 0.17 -0.7 278,889 - MIT1002_00251 0.17 +1.1 278,993 + MIT1002_00251 0.23 -0.1 279,009 - MIT1002_00251 0.23 +0.1 279,023 - MIT1002_00251 0.24 -1.9 279,077 - MIT1002_00251 0.27 -1.1 279,163 + MIT1002_00251 0.31 -0.3 279,180 + MIT1002_00251 0.32 -0.5 279,180 + MIT1002_00251 0.32 +0.4 279,272 + MIT1002_00251 0.36 +0.8 279,272 + MIT1002_00251 0.36 -0.1 279,272 + MIT1002_00251 0.36 +0.3 279,280 - MIT1002_00251 0.37 +0.0 279,280 - MIT1002_00251 0.37 -0.8 279,282 + MIT1002_00251 0.37 -0.0 279,291 - MIT1002_00251 0.37 +0.3 279,400 + MIT1002_00251 0.43 +0.1 279,400 + MIT1002_00251 0.43 -0.2 279,408 - MIT1002_00251 0.43 +0.8 279,408 - MIT1002_00251 0.43 -2.6 279,408 - MIT1002_00251 0.43 +1.0 279,423 - MIT1002_00251 0.44 -0.2 279,423 - MIT1002_00251 0.44 +1.0 279,425 + MIT1002_00251 0.44 +0.4
Or see this region's nucleotide sequence