Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00130 and MIT1002_00131 are separated by 115 nucleotides MIT1002_00131 and MIT1002_00132 are separated by 74 nucleotides MIT1002_00132 and MIT1002_00133 are separated by 284 nucleotides
MIT1002_00130: MIT1002_00130 - Arginine exporter protein ArgO, at 140,434 to 141,036
_00130
MIT1002_00131: MIT1002_00131 - Quaternary ammonium compound-resistance protein SugE, at 141,152 to 141,469
_00131
MIT1002_00132: MIT1002_00132 - hypothetical protein, at 141,544 to 142,008
_00132
MIT1002_00133: MIT1002_00133 - Small T antigen, at 142,293 to 143,012
_00133
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 140.558 kb on + strand, within MIT1002_00130 at 140.588 kb on + strand, within MIT1002_00130 at 140.596 kb on - strand, within MIT1002_00130 at 140.596 kb on - strand, within MIT1002_00130 at 140.596 kb on - strand, within MIT1002_00130 at 140.596 kb on - strand, within MIT1002_00130 at 140.596 kb on - strand, within MIT1002_00130 at 140.598 kb on + strand, within MIT1002_00130 at 140.603 kb on + strand, within MIT1002_00130 at 140.604 kb on - strand, within MIT1002_00130 at 140.627 kb on + strand, within MIT1002_00130 at 140.659 kb on + strand, within MIT1002_00130 at 140.660 kb on + strand, within MIT1002_00130 at 140.813 kb on - strand, within MIT1002_00130 at 140.827 kb on - strand, within MIT1002_00130 at 140.914 kb on + strand, within MIT1002_00130 at 140.914 kb on + strand, within MIT1002_00130 at 140.914 kb on + strand, within MIT1002_00130 at 140.924 kb on + strand, within MIT1002_00130 at 140.945 kb on + strand, within MIT1002_00130 at 140.957 kb on + strand, within MIT1002_00130 at 140.992 kb on - strand at 141.006 kb on - strand at 141.141 kb on + strand at 141.141 kb on + strand at 141.150 kb on - strand at 141.170 kb on + strand at 141.265 kb on + strand, within MIT1002_00131 at 141.325 kb on + strand, within MIT1002_00131 at 141.333 kb on - strand, within MIT1002_00131 at 141.333 kb on - strand, within MIT1002_00131 at 141.335 kb on + strand, within MIT1002_00131 at 141.343 kb on - strand, within MIT1002_00131 at 141.449 kb on + strand at 141.457 kb on - strand at 141.478 kb on - strand at 141.548 kb on - strand at 141.711 kb on + strand, within MIT1002_00132 at 141.729 kb on + strand, within MIT1002_00132 at 141.729 kb on + strand, within MIT1002_00132 at 141.737 kb on + strand, within MIT1002_00132 at 141.737 kb on + strand, within MIT1002_00132 at 141.739 kb on + strand, within MIT1002_00132 at 141.811 kb on - strand, within MIT1002_00132 at 141.915 kb on - strand, within MIT1002_00132 at 141.922 kb on - strand, within MIT1002_00132 at 141.965 kb on + strand at 141.981 kb on - strand at 142.000 kb on - strand at 142.012 kb on + strand at 142.017 kb on + strand at 142.017 kb on + strand at 142.025 kb on - strand at 142.035 kb on - strand at 142.040 kb on + strand at 142.048 kb on - strand at 142.081 kb on - strand at 142.135 kb on + strand at 142.195 kb on + strand at 142.239 kb on + strand at 142.247 kb on - strand at 142.260 kb on + strand at 142.261 kb on + strand at 142.262 kb on - strand at 142.279 kb on - strand at 142.283 kb on + strand at 142.328 kb on - strand at 142.337 kb on - strand at 142.404 kb on - strand, within MIT1002_00133 at 142.404 kb on - strand, within MIT1002_00133 at 142.475 kb on + strand, within MIT1002_00133 at 142.528 kb on + strand, within MIT1002_00133 at 142.538 kb on + strand, within MIT1002_00133 at 142.546 kb on - strand, within MIT1002_00133 at 142.546 kb on - strand, within MIT1002_00133 at 142.684 kb on - strand, within MIT1002_00133 at 142.684 kb on - strand, within MIT1002_00133 at 142.702 kb on + strand, within MIT1002_00133 at 142.703 kb on - strand, within MIT1002_00133 at 142.740 kb on - strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.813 kb on + strand, within MIT1002_00133 at 142.821 kb on - strand, within MIT1002_00133 at 142.821 kb on - strand, within MIT1002_00133 at 142.821 kb on - strand, within MIT1002_00133 at 142.821 kb on - strand, within MIT1002_00133 at 142.821 kb on - strand, within MIT1002_00133 at 142.837 kb on + strand, within MIT1002_00133 at 142.848 kb on + strand, within MIT1002_00133 at 142.856 kb on - strand, within MIT1002_00133 at 142.859 kb on + strand, within MIT1002_00133 at 142.937 kb on + strand, within MIT1002_00133 at 142.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2 remove 140,558 + MIT1002_00130 0.21 -0.5 140,588 + MIT1002_00130 0.26 +0.3 140,596 - MIT1002_00130 0.27 +0.7 140,596 - MIT1002_00130 0.27 +0.5 140,596 - MIT1002_00130 0.27 +0.5 140,596 - MIT1002_00130 0.27 +0.2 140,596 - MIT1002_00130 0.27 -0.5 140,598 + MIT1002_00130 0.27 -2.1 140,603 + MIT1002_00130 0.28 +1.4 140,604 - MIT1002_00130 0.28 -0.6 140,627 + MIT1002_00130 0.32 -0.7 140,659 + MIT1002_00130 0.37 -0.9 140,660 + MIT1002_00130 0.37 +0.4 140,813 - MIT1002_00130 0.63 +0.1 140,827 - MIT1002_00130 0.65 -0.3 140,914 + MIT1002_00130 0.80 -0.3 140,914 + MIT1002_00130 0.80 -2.6 140,914 + MIT1002_00130 0.80 +0.3 140,924 + MIT1002_00130 0.81 +0.2 140,945 + MIT1002_00130 0.85 +0.2 140,957 + MIT1002_00130 0.87 +0.9 140,992 - +1.1 141,006 - +0.2 141,141 + +2.2 141,141 + +0.5 141,150 - -0.1 141,170 + +0.2 141,265 + MIT1002_00131 0.36 +0.1 141,325 + MIT1002_00131 0.54 +0.8 141,333 - MIT1002_00131 0.57 +2.0 141,333 - MIT1002_00131 0.57 -0.6 141,335 + MIT1002_00131 0.58 -2.1 141,343 - MIT1002_00131 0.60 -0.3 141,449 + +0.6 141,457 - +0.9 141,478 - +0.5 141,548 - +0.9 141,711 + MIT1002_00132 0.36 +2.0 141,729 + MIT1002_00132 0.40 -0.3 141,729 + MIT1002_00132 0.40 +0.6 141,737 + MIT1002_00132 0.42 -0.2 141,737 + MIT1002_00132 0.42 +0.9 141,739 + MIT1002_00132 0.42 +0.0 141,811 - MIT1002_00132 0.57 +1.7 141,915 - MIT1002_00132 0.80 -0.6 141,922 - MIT1002_00132 0.81 -1.6 141,965 + -0.2 141,981 - -2.4 142,000 - -0.1 142,012 + -2.1 142,017 + -1.1 142,017 + -0.2 142,025 - -2.2 142,035 - +1.1 142,040 + -0.3 142,048 - +0.2 142,081 - +0.9 142,135 + -1.0 142,195 + -2.2 142,239 + +0.5 142,247 - +1.8 142,260 + +2.2 142,261 + -1.3 142,262 - +0.2 142,279 - -0.0 142,283 + +0.2 142,328 - -1.1 142,337 - -1.9 142,404 - MIT1002_00133 0.15 -0.4 142,404 - MIT1002_00133 0.15 +0.8 142,475 + MIT1002_00133 0.25 +0.3 142,528 + MIT1002_00133 0.33 +0.4 142,538 + MIT1002_00133 0.34 -1.3 142,546 - MIT1002_00133 0.35 -1.8 142,546 - MIT1002_00133 0.35 -0.4 142,684 - MIT1002_00133 0.54 +2.0 142,684 - MIT1002_00133 0.54 +1.0 142,702 + MIT1002_00133 0.57 +0.2 142,703 - MIT1002_00133 0.57 -1.1 142,740 - MIT1002_00133 0.62 -0.6 142,813 + MIT1002_00133 0.72 -1.5 142,813 + MIT1002_00133 0.72 -0.3 142,813 + MIT1002_00133 0.72 +1.3 142,813 + MIT1002_00133 0.72 +1.3 142,813 + MIT1002_00133 0.72 -0.2 142,813 + MIT1002_00133 0.72 -1.2 142,813 + MIT1002_00133 0.72 -0.6 142,813 + MIT1002_00133 0.72 +0.0 142,821 - MIT1002_00133 0.73 -0.2 142,821 - MIT1002_00133 0.73 -3.3 142,821 - MIT1002_00133 0.73 -0.8 142,821 - MIT1002_00133 0.73 -1.1 142,821 - MIT1002_00133 0.73 -1.4 142,837 + MIT1002_00133 0.76 -0.3 142,848 + MIT1002_00133 0.77 -0.0 142,856 - MIT1002_00133 0.78 +0.3 142,859 + MIT1002_00133 0.79 +0.5 142,937 + MIT1002_00133 0.89 +0.4 142,990 - +0.4
Or see this region's nucleotide sequence