Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00093

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00092 and MIT1002_00093 overlap by 4 nucleotidesMIT1002_00093 and MIT1002_00094 are separated by 1 nucleotidesMIT1002_00094 and MIT1002_00095 overlap by 4 nucleotides MIT1002_00092: MIT1002_00092 - 2-iminoacetate synthase, at 100,093 to 101,226 _00092 MIT1002_00093: MIT1002_00093 - Thiazole synthase, at 101,223 to 101,993 _00093 MIT1002_00094: MIT1002_00094 - sulfur carrier protein ThiS, at 101,995 to 102,204 _00094 MIT1002_00095: MIT1002_00095 - Molybdopterin-synthase adenylyltransferase, at 102,201 to 102,995 _00095 MIT1002_00096: MIT1002_00096 - Thiamine-phosphate synthase, at 102,988 to 104,589 _00096 Position (kb) 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 100.267 kb on - strand, within MIT1002_00092at 100.269 kb on - strand, within MIT1002_00092at 100.271 kb on + strand, within MIT1002_00092at 100.281 kb on + strand, within MIT1002_00092at 100.281 kb on + strand, within MIT1002_00092at 100.281 kb on + strand, within MIT1002_00092at 100.289 kb on - strand, within MIT1002_00092at 100.294 kb on + strand, within MIT1002_00092at 100.321 kb on - strand, within MIT1002_00092at 100.386 kb on + strand, within MIT1002_00092at 100.413 kb on - strand, within MIT1002_00092at 100.418 kb on - strand, within MIT1002_00092at 100.475 kb on - strand, within MIT1002_00092at 100.533 kb on - strand, within MIT1002_00092at 100.557 kb on - strand, within MIT1002_00092at 100.557 kb on - strand, within MIT1002_00092at 100.648 kb on + strand, within MIT1002_00092at 100.679 kb on - strand, within MIT1002_00092at 100.681 kb on - strand, within MIT1002_00092at 100.690 kb on + strand, within MIT1002_00092at 100.690 kb on + strand, within MIT1002_00092at 100.690 kb on + strand, within MIT1002_00092at 100.690 kb on + strand, within MIT1002_00092at 100.698 kb on - strand, within MIT1002_00092at 100.698 kb on - strand, within MIT1002_00092at 100.698 kb on - strand, within MIT1002_00092at 100.698 kb on - strand, within MIT1002_00092at 100.749 kb on - strand, within MIT1002_00092at 100.779 kb on - strand, within MIT1002_00092at 100.841 kb on + strand, within MIT1002_00092at 101.005 kb on - strand, within MIT1002_00092at 101.042 kb on + strand, within MIT1002_00092at 101.092 kb on + strand, within MIT1002_00092at 101.100 kb on - strand, within MIT1002_00092at 101.139 kb on - strandat 101.150 kb on - strandat 101.197 kb on - strandat 101.220 kb on + strandat 101.255 kb on + strandat 101.255 kb on + strandat 101.380 kb on + strand, within MIT1002_00093at 101.441 kb on - strand, within MIT1002_00093at 101.514 kb on + strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.570 kb on + strand, within MIT1002_00093at 101.578 kb on - strand, within MIT1002_00093at 101.602 kb on - strand, within MIT1002_00093at 101.663 kb on + strand, within MIT1002_00093at 101.685 kb on + strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.754 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.928 kb on - strandat 101.965 kb on - strandat 101.970 kb on + strandat 101.978 kb on - strandat 102.083 kb on - strand, within MIT1002_00094at 102.255 kb on + strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.263 kb on + strandat 102.263 kb on - strandat 102.263 kb on - strandat 102.265 kb on + strandat 102.284 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.375 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.512 kb on + strand, within MIT1002_00095at 102.556 kb on + strand, within MIT1002_00095at 102.562 kb on - strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.576 kb on - strand, within MIT1002_00095at 102.581 kb on - strand, within MIT1002_00095at 102.674 kb on + strand, within MIT1002_00095at 102.677 kb on - strand, within MIT1002_00095at 102.682 kb on - strand, within MIT1002_00095at 102.719 kb on + strand, within MIT1002_00095at 102.776 kb on + strand, within MIT1002_00095at 102.784 kb on - strand, within MIT1002_00095at 102.786 kb on + strand, within MIT1002_00095at 102.799 kb on - strand, within MIT1002_00095at 102.863 kb on - strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.876 kb on - strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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100,267 - MIT1002_00092 0.15 -0.3
100,269 - MIT1002_00092 0.16 -0.2
100,271 + MIT1002_00092 0.16 -0.1
100,281 + MIT1002_00092 0.17 -0.9
100,281 + MIT1002_00092 0.17 -2.2
100,281 + MIT1002_00092 0.17 +0.6
100,289 - MIT1002_00092 0.17 -0.6
100,294 + MIT1002_00092 0.18 -1.8
100,321 - MIT1002_00092 0.20 -0.1
100,386 + MIT1002_00092 0.26 -0.7
100,413 - MIT1002_00092 0.28 +0.3
100,418 - MIT1002_00092 0.29 -2.8
100,475 - MIT1002_00092 0.34 -1.6
100,533 - MIT1002_00092 0.39 +1.5
100,557 - MIT1002_00092 0.41 -0.5
100,557 - MIT1002_00092 0.41 +1.1
100,648 + MIT1002_00092 0.49 -2.8
100,679 - MIT1002_00092 0.52 +0.7
100,681 - MIT1002_00092 0.52 -0.5
100,690 + MIT1002_00092 0.53 +1.0
100,690 + MIT1002_00092 0.53 -0.7
100,690 + MIT1002_00092 0.53 -0.3
100,690 + MIT1002_00092 0.53 -0.1
100,698 - MIT1002_00092 0.53 +1.3
100,698 - MIT1002_00092 0.53 -0.3
100,698 - MIT1002_00092 0.53 -1.5
100,698 - MIT1002_00092 0.53 -2.0
100,749 - MIT1002_00092 0.58 -1.2
100,779 - MIT1002_00092 0.60 -0.2
100,841 + MIT1002_00092 0.66 -0.5
101,005 - MIT1002_00092 0.80 -0.6
101,042 + MIT1002_00092 0.84 +0.8
101,092 + MIT1002_00092 0.88 +0.2
101,100 - MIT1002_00092 0.89 +0.3
101,139 - -0.9
101,150 - -0.4
101,197 - -0.6
101,220 + -1.0
101,255 + -0.3
101,255 + +0.6
101,380 + MIT1002_00093 0.20 +0.5
101,441 - MIT1002_00093 0.28 -1.6
101,514 + MIT1002_00093 0.38 -0.7
101,522 - MIT1002_00093 0.39 -0.4
101,522 - MIT1002_00093 0.39 -0.5
101,570 + MIT1002_00093 0.45 -0.5
101,578 - MIT1002_00093 0.46 -0.1
101,602 - MIT1002_00093 0.49 -2.5
101,663 + MIT1002_00093 0.57 -2.6
101,685 + MIT1002_00093 0.60 -0.8
101,693 - MIT1002_00093 0.61 +1.9
101,693 - MIT1002_00093 0.61 +0.5
101,693 - MIT1002_00093 0.61 -0.7
101,724 + MIT1002_00093 0.65 -1.1
101,724 + MIT1002_00093 0.65 -0.4
101,727 - MIT1002_00093 0.65 +0.1
101,727 - MIT1002_00093 0.65 +0.3
101,732 - MIT1002_00093 0.66 +0.3
101,732 - MIT1002_00093 0.66 -0.6
101,732 - MIT1002_00093 0.66 +0.3
101,754 + MIT1002_00093 0.69 -0.0
101,889 + MIT1002_00093 0.86 +0.6
101,889 + MIT1002_00093 0.86 -0.2
101,897 - MIT1002_00093 0.87 -0.3
101,897 - MIT1002_00093 0.87 +0.6
101,897 - MIT1002_00093 0.87 -1.1
101,897 - MIT1002_00093 0.87 +0.2
101,903 + MIT1002_00093 0.88 +0.1
101,903 + MIT1002_00093 0.88 -1.6
101,911 - MIT1002_00093 0.89 -1.2
101,911 - MIT1002_00093 0.89 -0.6
101,911 - MIT1002_00093 0.89 -0.3
101,928 - -0.5
101,965 - +0.0
101,970 + +0.3
101,978 - -0.0
102,083 - MIT1002_00094 0.42 -1.1
102,255 + +0.5
102,255 + -0.6
102,255 + -1.3
102,263 + +1.0
102,263 - +0.5
102,263 - +0.1
102,265 + -1.9
102,284 + MIT1002_00095 0.10 +2.3
102,330 + MIT1002_00095 0.16 -0.1
102,330 + MIT1002_00095 0.16 -0.4
102,330 + MIT1002_00095 0.16 -1.6
102,338 - MIT1002_00095 0.17 -3.9
102,338 - MIT1002_00095 0.17 +0.2
102,360 + MIT1002_00095 0.20 +1.5
102,360 + MIT1002_00095 0.20 -0.9
102,360 + MIT1002_00095 0.20 +0.3
102,375 + MIT1002_00095 0.22 -0.3
102,465 + MIT1002_00095 0.33 -0.7
102,465 + MIT1002_00095 0.33 -1.7
102,465 + MIT1002_00095 0.33 -0.4
102,465 + MIT1002_00095 0.33 -0.1
102,465 + MIT1002_00095 0.33 -2.3
102,473 - MIT1002_00095 0.34 +0.8
102,473 - MIT1002_00095 0.34 -0.3
102,512 + MIT1002_00095 0.39 +0.0
102,556 + MIT1002_00095 0.45 +0.1
102,562 - MIT1002_00095 0.45 -2.7
102,568 + MIT1002_00095 0.46 +0.1
102,568 + MIT1002_00095 0.46 -0.9
102,576 - MIT1002_00095 0.47 -0.9
102,581 - MIT1002_00095 0.48 -0.1
102,674 + MIT1002_00095 0.59 -0.6
102,677 - MIT1002_00095 0.60 +1.4
102,682 - MIT1002_00095 0.61 -0.1
102,719 + MIT1002_00095 0.65 +0.3
102,776 + MIT1002_00095 0.72 -0.5
102,784 - MIT1002_00095 0.73 +0.2
102,786 + MIT1002_00095 0.74 -0.2
102,799 - MIT1002_00095 0.75 +0.1
102,863 - MIT1002_00095 0.83 -0.5
102,868 + MIT1002_00095 0.84 -0.1
102,868 + MIT1002_00095 0.84 +0.2
102,876 - MIT1002_00095 0.85 +0.7
102,882 + MIT1002_00095 0.86 -0.2
102,882 + MIT1002_00095 0.86 -2.7
102,974 - +0.4

Or see this region's nucleotide sequence