Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00023

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00022 and MIT1002_00023 are separated by 1 nucleotidesMIT1002_00023 and MIT1002_00024 are separated by 85 nucleotidesMIT1002_00024 and MIT1002_00025 are separated by 44 nucleotides MIT1002_00022: MIT1002_00022 - DNA protecting protein DprA, at 26,151 to 27,260 _00022 MIT1002_00023: MIT1002_00023 - hypothetical protein, at 27,262 to 27,738 _00023 MIT1002_00024: MIT1002_00024 - DNA topoisomerase 1, at 27,824 to 28,366 _00024 MIT1002_00025: MIT1002_00025 - t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN, at 28,411 to 29,016 _00025 Position (kb) 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.276 kb on - strand, within MIT1002_00022at 26.308 kb on + strand, within MIT1002_00022at 26.338 kb on - strand, within MIT1002_00022at 26.363 kb on - strand, within MIT1002_00022at 26.365 kb on + strand, within MIT1002_00022at 26.433 kb on - strand, within MIT1002_00022at 26.435 kb on + strand, within MIT1002_00022at 26.450 kb on - strand, within MIT1002_00022at 26.502 kb on + strand, within MIT1002_00022at 26.534 kb on + strand, within MIT1002_00022at 26.534 kb on + strand, within MIT1002_00022at 26.542 kb on - strand, within MIT1002_00022at 26.559 kb on + strand, within MIT1002_00022at 26.559 kb on + strand, within MIT1002_00022at 26.559 kb on + strand, within MIT1002_00022at 26.589 kb on - strand, within MIT1002_00022at 26.599 kb on + strand, within MIT1002_00022at 26.607 kb on - strand, within MIT1002_00022at 26.623 kb on + strand, within MIT1002_00022at 26.628 kb on + strand, within MIT1002_00022at 26.698 kb on - strand, within MIT1002_00022at 26.714 kb on + strand, within MIT1002_00022at 26.714 kb on + strand, within MIT1002_00022at 26.717 kb on + strand, within MIT1002_00022at 26.737 kb on + strand, within MIT1002_00022at 26.742 kb on + strand, within MIT1002_00022at 26.769 kb on + strand, within MIT1002_00022at 26.776 kb on + strand, within MIT1002_00022at 26.776 kb on + strand, within MIT1002_00022at 26.828 kb on - strand, within MIT1002_00022at 26.837 kb on - strand, within MIT1002_00022at 26.895 kb on + strand, within MIT1002_00022at 26.895 kb on + strand, within MIT1002_00022at 26.895 kb on + strand, within MIT1002_00022at 26.903 kb on - strand, within MIT1002_00022at 26.924 kb on + strand, within MIT1002_00022at 26.939 kb on + strand, within MIT1002_00022at 26.947 kb on - strand, within MIT1002_00022at 26.947 kb on - strand, within MIT1002_00022at 26.962 kb on + strand, within MIT1002_00022at 27.227 kb on + strandat 27.233 kb on - strandat 27.426 kb on - strand, within MIT1002_00023at 27.426 kb on - strand, within MIT1002_00023at 27.454 kb on + strand, within MIT1002_00023at 27.454 kb on + strand, within MIT1002_00023at 27.454 kb on + strand, within MIT1002_00023at 27.462 kb on - strand, within MIT1002_00023at 27.462 kb on - strand, within MIT1002_00023at 27.462 kb on - strand, within MIT1002_00023at 27.462 kb on - strand, within MIT1002_00023at 27.462 kb on - strand, within MIT1002_00023at 27.466 kb on + strand, within MIT1002_00023at 27.466 kb on + strand, within MIT1002_00023at 27.474 kb on - strand, within MIT1002_00023at 27.474 kb on - strand, within MIT1002_00023at 27.476 kb on + strand, within MIT1002_00023at 27.484 kb on - strand, within MIT1002_00023at 27.544 kb on - strand, within MIT1002_00023at 27.546 kb on + strand, within MIT1002_00023at 27.553 kb on - strand, within MIT1002_00023at 27.554 kb on - strand, within MIT1002_00023at 27.554 kb on - strand, within MIT1002_00023at 27.561 kb on - strand, within MIT1002_00023at 27.588 kb on - strand, within MIT1002_00023at 27.628 kb on + strand, within MIT1002_00023at 27.636 kb on - strand, within MIT1002_00023at 27.636 kb on - strand, within MIT1002_00023at 27.651 kb on - strand, within MIT1002_00023at 27.652 kb on + strand, within MIT1002_00023at 27.684 kb on - strand, within MIT1002_00023at 27.684 kb on - strand, within MIT1002_00023at 27.741 kb on - strandat 27.743 kb on + strandat 27.830 kb on + strandat 27.891 kb on + strand, within MIT1002_00024at 27.901 kb on + strand, within MIT1002_00024at 27.968 kb on - strand, within MIT1002_00024at 27.969 kb on - strand, within MIT1002_00024at 28.009 kb on + strand, within MIT1002_00024at 28.010 kb on - strand, within MIT1002_00024at 28.025 kb on - strand, within MIT1002_00024at 28.026 kb on + strand, within MIT1002_00024at 28.033 kb on - strand, within MIT1002_00024at 28.034 kb on - strand, within MIT1002_00024at 28.038 kb on - strand, within MIT1002_00024at 28.042 kb on + strand, within MIT1002_00024at 28.120 kb on + strand, within MIT1002_00024at 28.161 kb on + strand, within MIT1002_00024at 28.168 kb on + strand, within MIT1002_00024at 28.176 kb on - strand, within MIT1002_00024at 28.182 kb on + strand, within MIT1002_00024at 28.231 kb on + strand, within MIT1002_00024at 28.245 kb on + strand, within MIT1002_00024at 28.253 kb on - strand, within MIT1002_00024at 28.253 kb on - strand, within MIT1002_00024at 28.325 kb on + strandat 28.327 kb on + strandat 28.333 kb on - strandat 28.335 kb on + strandat 28.350 kb on - strandat 28.350 kb on - strandat 28.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
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26,276 - MIT1002_00022 0.11 +0.1
26,308 + MIT1002_00022 0.14 +0.0
26,338 - MIT1002_00022 0.17 -0.9
26,363 - MIT1002_00022 0.19 -0.9
26,365 + MIT1002_00022 0.19 +1.0
26,433 - MIT1002_00022 0.25 +0.4
26,435 + MIT1002_00022 0.26 -2.4
26,450 - MIT1002_00022 0.27 +1.7
26,502 + MIT1002_00022 0.32 +0.6
26,534 + MIT1002_00022 0.35 +0.3
26,534 + MIT1002_00022 0.35 +0.6
26,542 - MIT1002_00022 0.35 +0.7
26,559 + MIT1002_00022 0.37 -0.7
26,559 + MIT1002_00022 0.37 -0.5
26,559 + MIT1002_00022 0.37 +0.4
26,589 - MIT1002_00022 0.39 +0.1
26,599 + MIT1002_00022 0.40 -0.2
26,607 - MIT1002_00022 0.41 +1.0
26,623 + MIT1002_00022 0.43 -0.3
26,628 + MIT1002_00022 0.43 -2.1
26,698 - MIT1002_00022 0.49 +0.3
26,714 + MIT1002_00022 0.51 +0.7
26,714 + MIT1002_00022 0.51 +0.5
26,717 + MIT1002_00022 0.51 -0.3
26,737 + MIT1002_00022 0.53 -0.7
26,742 + MIT1002_00022 0.53 +0.0
26,769 + MIT1002_00022 0.56 -0.2
26,776 + MIT1002_00022 0.56 -1.5
26,776 + MIT1002_00022 0.56 -0.3
26,828 - MIT1002_00022 0.61 -0.1
26,837 - MIT1002_00022 0.62 -3.1
26,895 + MIT1002_00022 0.67 +0.8
26,895 + MIT1002_00022 0.67 -1.0
26,895 + MIT1002_00022 0.67 +0.8
26,903 - MIT1002_00022 0.68 +1.2
26,924 + MIT1002_00022 0.70 +0.2
26,939 + MIT1002_00022 0.71 +0.7
26,947 - MIT1002_00022 0.72 +0.8
26,947 - MIT1002_00022 0.72 -0.4
26,962 + MIT1002_00022 0.73 -2.8
27,227 + +0.2
27,233 - +0.2
27,426 - MIT1002_00023 0.34 +0.1
27,426 - MIT1002_00023 0.34 -3.5
27,454 + MIT1002_00023 0.40 +0.4
27,454 + MIT1002_00023 0.40 +1.9
27,454 + MIT1002_00023 0.40 -0.3
27,462 - MIT1002_00023 0.42 -0.4
27,462 - MIT1002_00023 0.42 -0.6
27,462 - MIT1002_00023 0.42 -0.7
27,462 - MIT1002_00023 0.42 -0.4
27,462 - MIT1002_00023 0.42 -0.3
27,466 + MIT1002_00023 0.43 +0.2
27,466 + MIT1002_00023 0.43 -2.2
27,474 - MIT1002_00023 0.44 +0.5
27,474 - MIT1002_00023 0.44 -1.8
27,476 + MIT1002_00023 0.45 -0.0
27,484 - MIT1002_00023 0.47 -1.7
27,544 - MIT1002_00023 0.59 -1.9
27,546 + MIT1002_00023 0.60 -1.1
27,553 - MIT1002_00023 0.61 +0.4
27,554 - MIT1002_00023 0.61 -0.3
27,554 - MIT1002_00023 0.61 -1.2
27,561 - MIT1002_00023 0.63 +0.2
27,588 - MIT1002_00023 0.68 -0.4
27,628 + MIT1002_00023 0.77 -1.2
27,636 - MIT1002_00023 0.78 +0.4
27,636 - MIT1002_00023 0.78 -0.6
27,651 - MIT1002_00023 0.82 -1.7
27,652 + MIT1002_00023 0.82 +1.3
27,684 - MIT1002_00023 0.88 -1.1
27,684 - MIT1002_00023 0.88 -1.8
27,741 - +0.1
27,743 + -0.5
27,830 + +1.5
27,891 + MIT1002_00024 0.12 +0.6
27,901 + MIT1002_00024 0.14 -0.0
27,968 - MIT1002_00024 0.27 -0.0
27,969 - MIT1002_00024 0.27 -0.5
28,009 + MIT1002_00024 0.34 -0.1
28,010 - MIT1002_00024 0.34 -0.1
28,025 - MIT1002_00024 0.37 +0.4
28,026 + MIT1002_00024 0.37 +1.0
28,033 - MIT1002_00024 0.38 -3.1
28,034 - MIT1002_00024 0.39 -1.3
28,038 - MIT1002_00024 0.39 +0.0
28,042 + MIT1002_00024 0.40 +0.3
28,120 + MIT1002_00024 0.55 +0.0
28,161 + MIT1002_00024 0.62 -0.1
28,168 + MIT1002_00024 0.63 -0.4
28,176 - MIT1002_00024 0.65 +0.4
28,182 + MIT1002_00024 0.66 -0.8
28,231 + MIT1002_00024 0.75 -0.7
28,245 + MIT1002_00024 0.78 -2.8
28,253 - MIT1002_00024 0.79 +0.6
28,253 - MIT1002_00024 0.79 -0.3
28,325 + -1.7
28,327 + -1.1
28,333 - -0.5
28,335 + -0.9
28,350 - +0.4
28,350 - +1.0
28,387 + +0.8

Or see this region's nucleotide sequence