Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00019 and MIT1002_00020 are separated by 8 nucleotides MIT1002_00020 and MIT1002_00021 are separated by 216 nucleotides MIT1002_00021 and MIT1002_00022 are separated by 39 nucleotides
MIT1002_00019: MIT1002_00019 - Methionyl-tRNA formyltransferase, at 23,353 to 24,303
_00019
MIT1002_00020: MIT1002_00020 - Peptide deformylase 1, at 24,312 to 24,821
_00020
MIT1002_00021: MIT1002_00021 - LysM domain/BON superfamily protein, at 25,038 to 26,111
_00021
MIT1002_00022: MIT1002_00022 - DNA protecting protein DprA, at 26,151 to 27,260
_00022
Position (kb) 25
26
27 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 24.375 kb on - strand, within MIT1002_00020 at 24.845 kb on - strand at 24.978 kb on - strand at 24.980 kb on + strand at 25.066 kb on + strand at 25.071 kb on + strand at 25.108 kb on + strand at 25.108 kb on + strand at 25.150 kb on - strand, within MIT1002_00021 at 25.150 kb on - strand, within MIT1002_00021 at 25.150 kb on - strand, within MIT1002_00021 at 25.152 kb on - strand, within MIT1002_00021 at 25.157 kb on + strand, within MIT1002_00021 at 25.167 kb on - strand, within MIT1002_00021 at 25.213 kb on + strand, within MIT1002_00021 at 25.257 kb on - strand, within MIT1002_00021 at 25.258 kb on + strand, within MIT1002_00021 at 25.262 kb on - strand, within MIT1002_00021 at 25.323 kb on - strand, within MIT1002_00021 at 25.343 kb on + strand, within MIT1002_00021 at 25.364 kb on - strand, within MIT1002_00021 at 25.394 kb on + strand, within MIT1002_00021 at 25.397 kb on - strand, within MIT1002_00021 at 25.402 kb on + strand, within MIT1002_00021 at 25.448 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.458 kb on - strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.530 kb on + strand, within MIT1002_00021 at 25.535 kb on + strand, within MIT1002_00021 at 25.548 kb on + strand, within MIT1002_00021 at 25.553 kb on + strand, within MIT1002_00021 at 25.561 kb on - strand, within MIT1002_00021 at 25.625 kb on + strand, within MIT1002_00021 at 25.633 kb on - strand, within MIT1002_00021 at 25.660 kb on - strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.746 kb on + strand, within MIT1002_00021 at 25.754 kb on - strand, within MIT1002_00021 at 25.772 kb on - strand, within MIT1002_00021 at 25.786 kb on + strand, within MIT1002_00021 at 25.856 kb on - strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.876 kb on + strand, within MIT1002_00021 at 25.881 kb on + strand, within MIT1002_00021 at 25.926 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.941 kb on + strand, within MIT1002_00021 at 25.980 kb on - strand, within MIT1002_00021 at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.107 kb on - strand at 26.112 kb on + strand at 26.113 kb on - strand at 26.137 kb on + strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.192 kb on - strand at 26.194 kb on + strand at 26.194 kb on + strand at 26.202 kb on - strand at 26.202 kb on - strand at 26.212 kb on - strand at 26.276 kb on - strand, within MIT1002_00022 at 26.308 kb on + strand, within MIT1002_00022 at 26.338 kb on - strand, within MIT1002_00022 at 26.363 kb on - strand, within MIT1002_00022 at 26.365 kb on + strand, within MIT1002_00022 at 26.433 kb on - strand, within MIT1002_00022 at 26.435 kb on + strand, within MIT1002_00022 at 26.450 kb on - strand, within MIT1002_00022 at 26.502 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.542 kb on - strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.589 kb on - strand, within MIT1002_00022 at 26.599 kb on + strand, within MIT1002_00022 at 26.607 kb on - strand, within MIT1002_00022 at 26.623 kb on + strand, within MIT1002_00022 at 26.628 kb on + strand, within MIT1002_00022 at 26.698 kb on - strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.717 kb on + strand, within MIT1002_00022 at 26.737 kb on + strand, within MIT1002_00022 at 26.742 kb on + strand, within MIT1002_00022 at 26.769 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.828 kb on - strand, within MIT1002_00022 at 26.837 kb on - strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.903 kb on - strand, within MIT1002_00022 at 26.924 kb on + strand, within MIT1002_00022 at 26.939 kb on + strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.962 kb on + strand, within MIT1002_00022
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2 remove 24,375 - MIT1002_00020 0.12 +0.3 24,845 - -0.2 24,978 - +0.1 24,980 + -0.8 25,066 + -1.1 25,071 + +0.3 25,108 + +1.8 25,108 + -0.2 25,150 - MIT1002_00021 0.10 -0.1 25,150 - MIT1002_00021 0.10 -1.8 25,150 - MIT1002_00021 0.10 -0.2 25,152 - MIT1002_00021 0.11 +0.5 25,157 + MIT1002_00021 0.11 -0.8 25,167 - MIT1002_00021 0.12 +0.2 25,213 + MIT1002_00021 0.16 +0.8 25,257 - MIT1002_00021 0.20 -0.9 25,258 + MIT1002_00021 0.20 -0.7 25,262 - MIT1002_00021 0.21 +0.7 25,323 - MIT1002_00021 0.27 +0.7 25,343 + MIT1002_00021 0.28 -2.5 25,364 - MIT1002_00021 0.30 +0.0 25,394 + MIT1002_00021 0.33 -0.7 25,397 - MIT1002_00021 0.33 +0.7 25,402 + MIT1002_00021 0.34 -0.6 25,448 + MIT1002_00021 0.38 -0.7 25,450 + MIT1002_00021 0.38 -1.7 25,450 + MIT1002_00021 0.38 -1.3 25,458 - MIT1002_00021 0.39 -1.4 25,499 + MIT1002_00021 0.43 -0.8 25,499 + MIT1002_00021 0.43 -1.8 25,530 + MIT1002_00021 0.46 +0.3 25,535 + MIT1002_00021 0.46 -0.1 25,548 + MIT1002_00021 0.47 -1.0 25,553 + MIT1002_00021 0.48 -0.0 25,561 - MIT1002_00021 0.49 -1.0 25,625 + MIT1002_00021 0.55 -0.9 25,633 - MIT1002_00021 0.55 -3.1 25,660 - MIT1002_00021 0.58 +0.8 25,735 + MIT1002_00021 0.65 +0.3 25,735 + MIT1002_00021 0.65 -0.9 25,743 - MIT1002_00021 0.66 +0.2 25,743 - MIT1002_00021 0.66 -0.8 25,746 + MIT1002_00021 0.66 -1.3 25,754 - MIT1002_00021 0.67 -0.5 25,772 - MIT1002_00021 0.68 +0.4 25,786 + MIT1002_00021 0.70 +0.3 25,856 - MIT1002_00021 0.76 -2.1 25,858 + MIT1002_00021 0.76 +0.4 25,858 + MIT1002_00021 0.76 +0.1 25,876 + MIT1002_00021 0.78 +0.2 25,881 + MIT1002_00021 0.78 +0.0 25,926 + MIT1002_00021 0.83 -0.3 25,936 + MIT1002_00021 0.84 -1.5 25,936 + MIT1002_00021 0.84 -0.1 25,936 + MIT1002_00021 0.84 -0.2 25,936 + MIT1002_00021 0.84 +0.7 25,941 + MIT1002_00021 0.84 -0.8 25,980 - MIT1002_00021 0.88 -0.6 26,105 + -1.2 26,105 + +0.4 26,105 + +0.7 26,105 + +0.3 26,105 + -0.1 26,105 + -0.1 26,107 - +0.3 26,112 + -0.1 26,113 - -0.2 26,137 + -1.7 26,177 - -0.8 26,177 - -4.1 26,177 - -0.3 26,192 - -0.2 26,194 + -0.7 26,194 + +0.1 26,202 - +0.8 26,202 - +0.1 26,212 - -0.3 26,276 - MIT1002_00022 0.11 +0.1 26,308 + MIT1002_00022 0.14 +0.0 26,338 - MIT1002_00022 0.17 -0.9 26,363 - MIT1002_00022 0.19 -0.9 26,365 + MIT1002_00022 0.19 +1.0 26,433 - MIT1002_00022 0.25 +0.4 26,435 + MIT1002_00022 0.26 -2.4 26,450 - MIT1002_00022 0.27 +1.7 26,502 + MIT1002_00022 0.32 +0.6 26,534 + MIT1002_00022 0.35 +0.3 26,534 + MIT1002_00022 0.35 +0.6 26,542 - MIT1002_00022 0.35 +0.7 26,559 + MIT1002_00022 0.37 -0.7 26,559 + MIT1002_00022 0.37 -0.5 26,559 + MIT1002_00022 0.37 +0.4 26,589 - MIT1002_00022 0.39 +0.1 26,599 + MIT1002_00022 0.40 -0.2 26,607 - MIT1002_00022 0.41 +1.0 26,623 + MIT1002_00022 0.43 -0.3 26,628 + MIT1002_00022 0.43 -2.1 26,698 - MIT1002_00022 0.49 +0.3 26,714 + MIT1002_00022 0.51 +0.7 26,714 + MIT1002_00022 0.51 +0.5 26,717 + MIT1002_00022 0.51 -0.3 26,737 + MIT1002_00022 0.53 -0.7 26,742 + MIT1002_00022 0.53 +0.0 26,769 + MIT1002_00022 0.56 -0.2 26,776 + MIT1002_00022 0.56 -1.5 26,776 + MIT1002_00022 0.56 -0.3 26,828 - MIT1002_00022 0.61 -0.1 26,837 - MIT1002_00022 0.62 -3.1 26,895 + MIT1002_00022 0.67 +0.8 26,895 + MIT1002_00022 0.67 -1.0 26,895 + MIT1002_00022 0.67 +0.8 26,903 - MIT1002_00022 0.68 +1.2 26,924 + MIT1002_00022 0.70 +0.2 26,939 + MIT1002_00022 0.71 +0.7 26,947 - MIT1002_00022 0.72 +0.8 26,947 - MIT1002_00022 0.72 -0.4 26,962 + MIT1002_00022 0.73 -2.8
Or see this region's nucleotide sequence