Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04217 and MIT1002_04218 overlap by 40 nucleotides MIT1002_04218 and MIT1002_04219 overlap by 14 nucleotides MIT1002_04219 and MIT1002_04220 are separated by 9 nucleotides
MIT1002_04217: MIT1002_04217 - Chemotaxis protein methyltransferase, at 85,450 to 86,547
_04217
MIT1002_04218: MIT1002_04218 - hypothetical protein, at 86,508 to 86,780
_04218
MIT1002_04219: MIT1002_04219 - CheW-like domain protein, at 86,767 to 87,306
_04219
MIT1002_04220: MIT1002_04220 - Ribose and galactose chemoreceptor protein, at 87,316 to 88,779
_04220
Position (kb) 86
87
88 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.777 kb on + strand, within MIT1002_04217 at 85.779 kb on + strand, within MIT1002_04217 at 85.784 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.785 kb on - strand, within MIT1002_04217 at 85.787 kb on + strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.823 kb on - strand, within MIT1002_04217 at 85.831 kb on - strand, within MIT1002_04217 at 85.832 kb on + strand, within MIT1002_04217 at 85.840 kb on - strand, within MIT1002_04217 at 85.920 kb on + strand, within MIT1002_04217 at 85.921 kb on - strand, within MIT1002_04217 at 85.950 kb on + strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.969 kb on - strand, within MIT1002_04217 at 85.972 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.008 kb on - strand, within MIT1002_04217 at 86.119 kb on - strand, within MIT1002_04217 at 86.144 kb on - strand, within MIT1002_04217 at 86.153 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.154 kb on + strand, within MIT1002_04217 at 86.161 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.162 kb on - strand, within MIT1002_04217 at 86.169 kb on + strand, within MIT1002_04217 at 86.185 kb on + strand, within MIT1002_04217 at 86.249 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.297 kb on + strand, within MIT1002_04217 at 86.305 kb on - strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.320 kb on + strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.328 kb on - strand, within MIT1002_04217 at 86.388 kb on + strand, within MIT1002_04217 at 86.413 kb on + strand, within MIT1002_04217 at 86.414 kb on + strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.428 kb on - strand, within MIT1002_04217 at 86.473 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.497 kb on + strand at 86.498 kb on + strand at 86.506 kb on - strand at 86.506 kb on - strand at 86.514 kb on + strand at 86.518 kb on - strand at 86.522 kb on - strand at 86.553 kb on + strand, within MIT1002_04218 at 86.553 kb on + strand, within MIT1002_04218 at 86.561 kb on + strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.561 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.569 kb on - strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.580 kb on + strand, within MIT1002_04218 at 86.588 kb on - strand, within MIT1002_04218 at 86.601 kb on + strand, within MIT1002_04218 at 86.603 kb on + strand, within MIT1002_04218 at 86.724 kb on - strand, within MIT1002_04218 at 86.781 kb on + strand at 86.781 kb on + strand at 86.781 kb on + strand at 86.786 kb on + strand at 86.789 kb on - strand at 86.791 kb on + strand at 86.794 kb on - strand at 86.838 kb on + strand, within MIT1002_04219 at 86.846 kb on - strand, within MIT1002_04219 at 86.857 kb on - strand, within MIT1002_04219 at 86.873 kb on + strand, within MIT1002_04219 at 86.894 kb on + strand, within MIT1002_04219 at 86.931 kb on - strand, within MIT1002_04219 at 87.061 kb on - strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.076 kb on + strand, within MIT1002_04219 at 87.077 kb on + strand, within MIT1002_04219 at 87.143 kb on - strand, within MIT1002_04219 at 87.153 kb on - strand, within MIT1002_04219 at 87.159 kb on - strand, within MIT1002_04219 at 87.161 kb on - strand, within MIT1002_04219 at 87.177 kb on + strand, within MIT1002_04219 at 87.185 kb on - strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.211 kb on + strand, within MIT1002_04219 at 87.220 kb on - strand, within MIT1002_04219 at 87.297 kb on + strand at 87.297 kb on + strand at 87.301 kb on + strand at 87.314 kb on - strand at 87.315 kb on - strand at 87.423 kb on + strand at 87.430 kb on + strand at 87.456 kb on - strand at 87.461 kb on + strand at 87.461 kb on + strand at 87.468 kb on + strand, within MIT1002_04220 at 87.483 kb on + strand, within MIT1002_04220 at 87.483 kb on - strand, within MIT1002_04220 at 87.488 kb on + strand, within MIT1002_04220 at 87.510 kb on - strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220 at 87.544 kb on + strand, within MIT1002_04220 at 87.557 kb on - strand, within MIT1002_04220 at 87.624 kb on - strand, within MIT1002_04220 at 87.652 kb on - strand, within MIT1002_04220 at 87.654 kb on - strand, within MIT1002_04220 at 87.773 kb on + strand, within MIT1002_04220 at 87.815 kb on + strand, within MIT1002_04220 at 87.823 kb on - strand, within MIT1002_04220 at 87.858 kb on - strand, within MIT1002_04220 at 87.860 kb on + strand, within MIT1002_04220 at 87.860 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.948 kb on + strand, within MIT1002_04220 at 87.954 kb on - strand, within MIT1002_04220 at 87.956 kb on - strand, within MIT1002_04220 at 87.956 kb on - strand, within MIT1002_04220 at 87.956 kb on - strand, within MIT1002_04220 at 87.956 kb on - strand, within MIT1002_04220 at 87.956 kb on - strand, within MIT1002_04220 at 87.970 kb on + strand, within MIT1002_04220 at 87.976 kb on - strand, within MIT1002_04220 at 87.976 kb on - strand, within MIT1002_04220 at 87.976 kb on - strand, within MIT1002_04220 at 88.039 kb on + strand, within MIT1002_04220 at 88.074 kb on - strand, within MIT1002_04220 at 88.132 kb on - strand, within MIT1002_04220 at 88.171 kb on + strand, within MIT1002_04220 at 88.258 kb on - strand, within MIT1002_04220 at 88.262 kb on + strand, within MIT1002_04220
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 85,777 + MIT1002_04217 0.30 +0.2 85,777 + MIT1002_04217 0.30 +0.4 85,777 + MIT1002_04217 0.30 +0.1 85,777 + MIT1002_04217 0.30 +1.5 85,777 + MIT1002_04217 0.30 +0.4 85,777 + MIT1002_04217 0.30 +0.1 85,779 + MIT1002_04217 0.30 -0.9 85,784 - MIT1002_04217 0.30 -0.0 85,785 - MIT1002_04217 0.31 +0.1 85,785 - MIT1002_04217 0.31 +0.7 85,785 - MIT1002_04217 0.31 +0.2 85,785 - MIT1002_04217 0.31 +0.7 85,785 - MIT1002_04217 0.31 +0.8 85,785 - MIT1002_04217 0.31 -0.4 85,787 + MIT1002_04217 0.31 +2.1 85,823 - MIT1002_04217 0.34 -0.2 85,823 - MIT1002_04217 0.34 +0.4 85,831 - MIT1002_04217 0.35 +0.9 85,832 + MIT1002_04217 0.35 +0.2 85,840 - MIT1002_04217 0.36 +0.6 85,920 + MIT1002_04217 0.43 +0.2 85,921 - MIT1002_04217 0.43 -1.7 85,950 + MIT1002_04217 0.46 +2.0 85,969 - MIT1002_04217 0.47 +0.8 85,969 - MIT1002_04217 0.47 +0.9 85,969 - MIT1002_04217 0.47 -0.6 85,969 - MIT1002_04217 0.47 +0.6 85,972 - MIT1002_04217 0.48 -0.4 86,008 - MIT1002_04217 0.51 +0.6 86,008 - MIT1002_04217 0.51 +0.9 86,119 - MIT1002_04217 0.61 +0.9 86,144 - MIT1002_04217 0.63 +0.5 86,153 + MIT1002_04217 0.64 -0.5 86,154 + MIT1002_04217 0.64 +0.9 86,154 + MIT1002_04217 0.64 +0.9 86,154 + MIT1002_04217 0.64 +0.5 86,154 + MIT1002_04217 0.64 -1.4 86,161 - MIT1002_04217 0.65 +1.3 86,162 - MIT1002_04217 0.65 +0.5 86,162 - MIT1002_04217 0.65 -0.5 86,162 - MIT1002_04217 0.65 -1.7 86,162 - MIT1002_04217 0.65 +0.7 86,162 - MIT1002_04217 0.65 +0.6 86,169 + MIT1002_04217 0.65 +0.2 86,185 + MIT1002_04217 0.67 -0.4 86,249 + MIT1002_04217 0.73 +0.5 86,297 + MIT1002_04217 0.77 -0.2 86,297 + MIT1002_04217 0.77 -0.9 86,305 - MIT1002_04217 0.78 +1.4 86,320 + MIT1002_04217 0.79 -1.2 86,320 + MIT1002_04217 0.79 +0.2 86,328 - MIT1002_04217 0.80 -0.4 86,328 - MIT1002_04217 0.80 +1.3 86,388 + MIT1002_04217 0.85 -0.5 86,413 + MIT1002_04217 0.88 +0.1 86,414 + MIT1002_04217 0.88 -0.5 86,428 - MIT1002_04217 0.89 +0.1 86,428 - MIT1002_04217 0.89 +0.6 86,473 + -1.6 86,497 + -0.0 86,497 + -0.6 86,497 + +0.3 86,498 + +0.3 86,506 - -0.2 86,506 - -0.9 86,514 + -0.3 86,518 - +0.8 86,522 - -1.4 86,553 + MIT1002_04218 0.16 -0.4 86,553 + MIT1002_04218 0.16 +0.7 86,561 + MIT1002_04218 0.19 +2.4 86,561 - MIT1002_04218 0.19 -0.1 86,561 - MIT1002_04218 0.19 +0.8 86,561 - MIT1002_04218 0.19 +1.0 86,561 - MIT1002_04218 0.19 -0.9 86,561 - MIT1002_04218 0.19 +0.6 86,569 - MIT1002_04218 0.22 -0.3 86,569 - MIT1002_04218 0.22 +1.9 86,569 - MIT1002_04218 0.22 +0.5 86,569 - MIT1002_04218 0.22 +1.9 86,580 + MIT1002_04218 0.26 +0.2 86,580 + MIT1002_04218 0.26 +0.5 86,588 - MIT1002_04218 0.29 +0.1 86,601 + MIT1002_04218 0.34 +0.2 86,603 + MIT1002_04218 0.35 +0.6 86,724 - MIT1002_04218 0.79 +0.7 86,781 + -0.4 86,781 + +0.1 86,781 + +1.1 86,786 + -0.1 86,789 - +0.3 86,791 + -0.8 86,794 - -3.9 86,838 + MIT1002_04219 0.13 -0.3 86,846 - MIT1002_04219 0.15 +2.1 86,857 - MIT1002_04219 0.17 -0.3 86,873 + MIT1002_04219 0.20 +0.0 86,894 + MIT1002_04219 0.24 -0.2 86,931 - MIT1002_04219 0.30 -1.2 87,061 - MIT1002_04219 0.54 -0.4 87,076 + MIT1002_04219 0.57 -1.1 87,076 + MIT1002_04219 0.57 +0.3 87,077 + MIT1002_04219 0.57 -0.1 87,143 - MIT1002_04219 0.70 +1.2 87,153 - MIT1002_04219 0.71 +0.0 87,159 - MIT1002_04219 0.73 +0.9 87,161 - MIT1002_04219 0.73 +0.6 87,177 + MIT1002_04219 0.76 -0.0 87,185 - MIT1002_04219 0.77 +0.2 87,211 + MIT1002_04219 0.82 -0.7 87,211 + MIT1002_04219 0.82 +1.1 87,220 - MIT1002_04219 0.84 -1.0 87,297 + +0.6 87,297 + +0.6 87,301 + -0.4 87,314 - +0.7 87,315 - +0.1 87,423 + +0.1 87,430 + -3.4 87,456 - +0.3 87,461 + +0.1 87,461 + +0.6 87,468 + MIT1002_04220 0.10 -0.2 87,483 + MIT1002_04220 0.11 +0.1 87,483 - MIT1002_04220 0.11 -0.5 87,488 + MIT1002_04220 0.12 -1.5 87,510 - MIT1002_04220 0.13 +0.3 87,544 + MIT1002_04220 0.16 +0.3 87,544 + MIT1002_04220 0.16 -1.2 87,557 - MIT1002_04220 0.16 -1.2 87,624 - MIT1002_04220 0.21 -0.1 87,652 - MIT1002_04220 0.23 +0.3 87,654 - MIT1002_04220 0.23 +0.2 87,773 + MIT1002_04220 0.31 +0.2 87,815 + MIT1002_04220 0.34 -1.7 87,823 - MIT1002_04220 0.35 +0.1 87,858 - MIT1002_04220 0.37 -0.2 87,860 + MIT1002_04220 0.37 -1.4 87,860 + MIT1002_04220 0.37 +0.5 87,948 + MIT1002_04220 0.43 +0.6 87,948 + MIT1002_04220 0.43 +0.6 87,948 + MIT1002_04220 0.43 -0.2 87,948 + MIT1002_04220 0.43 +1.4 87,948 + MIT1002_04220 0.43 +1.0 87,948 + MIT1002_04220 0.43 -1.8 87,954 - MIT1002_04220 0.44 +0.5 87,956 - MIT1002_04220 0.44 -0.1 87,956 - MIT1002_04220 0.44 +0.4 87,956 - MIT1002_04220 0.44 -1.4 87,956 - MIT1002_04220 0.44 -0.4 87,956 - MIT1002_04220 0.44 +1.3 87,970 + MIT1002_04220 0.45 -1.6 87,976 - MIT1002_04220 0.45 +0.4 87,976 - MIT1002_04220 0.45 +0.7 87,976 - MIT1002_04220 0.45 -0.4 88,039 + MIT1002_04220 0.49 +0.3 88,074 - MIT1002_04220 0.52 +1.1 88,132 - MIT1002_04220 0.56 -0.7 88,171 + MIT1002_04220 0.58 +0.6 88,258 - MIT1002_04220 0.64 +0.6 88,262 + MIT1002_04220 0.65 +0.4
Or see this region's nucleotide sequence