Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04207

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04206 and MIT1002_04207 are separated by 207 nucleotidesMIT1002_04207 and MIT1002_04208 are separated by 426 nucleotidesMIT1002_04208 and MIT1002_04209 are separated by 23 nucleotides MIT1002_04206: MIT1002_04206 - site-specific tyrosine recombinase XerC, at 71,655 to 72,662 _04206 MIT1002_04207: MIT1002_04207 - chromosome segregation protein SMC, at 72,870 to 73,919 _04207 MIT1002_04208: MIT1002_04208 - IS66 Orf2 like protein, at 74,346 to 74,681 _04208 MIT1002_04209: MIT1002_04209 - Transposase, at 74,705 to 76,282 _04209 Position (kb) 72 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.901 kb on + strand, within MIT1002_04206at 71.934 kb on - strand, within MIT1002_04206at 71.940 kb on - strand, within MIT1002_04206at 72.033 kb on - strand, within MIT1002_04206at 72.057 kb on + strand, within MIT1002_04206at 72.065 kb on - strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.266 kb on + strand, within MIT1002_04206at 72.273 kb on + strand, within MIT1002_04206at 72.274 kb on + strand, within MIT1002_04206at 72.274 kb on - strand, within MIT1002_04206at 72.280 kb on + strand, within MIT1002_04206at 72.288 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.476 kb on - strand, within MIT1002_04206at 72.542 kb on + strand, within MIT1002_04206at 72.550 kb on - strand, within MIT1002_04206at 72.575 kb on - strandat 72.602 kb on + strandat 72.739 kb on - strandat 72.739 kb on - strandat 72.883 kb on + strandat 72.927 kb on + strandat 72.934 kb on - strandat 72.941 kb on - strandat 72.941 kb on - strandat 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.004 kb on + strand, within MIT1002_04207at 73.063 kb on + strand, within MIT1002_04207at 73.075 kb on - strand, within MIT1002_04207at 73.075 kb on - strand, within MIT1002_04207at 73.128 kb on - strand, within MIT1002_04207at 73.181 kb on - strand, within MIT1002_04207at 73.196 kb on - strand, within MIT1002_04207at 73.208 kb on - strand, within MIT1002_04207at 73.279 kb on - strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.304 kb on + strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.312 kb on - strand, within MIT1002_04207at 73.324 kb on - strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.431 kb on + strand, within MIT1002_04207at 73.432 kb on - strand, within MIT1002_04207at 73.439 kb on - strand, within MIT1002_04207at 73.452 kb on + strand, within MIT1002_04207at 73.468 kb on - strand, within MIT1002_04207at 73.496 kb on - strand, within MIT1002_04207at 73.503 kb on + strand, within MIT1002_04207at 73.513 kb on + strand, within MIT1002_04207at 73.536 kb on - strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.595 kb on + strand, within MIT1002_04207at 73.608 kb on - strand, within MIT1002_04207at 73.693 kb on - strand, within MIT1002_04207at 73.778 kb on + strand, within MIT1002_04207at 73.785 kb on + strand, within MIT1002_04207at 73.785 kb on + strand, within MIT1002_04207at 73.853 kb on - strandat 73.853 kb on - strandat 73.855 kb on + strandat 73.901 kb on + strandat 73.901 kb on + strandat 73.901 kb on + strandat 73.909 kb on - strandat 73.909 kb on - strandat 73.942 kb on - strandat 74.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
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71,901 + MIT1002_04206 0.24 -0.1
71,934 - MIT1002_04206 0.28 +0.3
71,940 - MIT1002_04206 0.28 -0.2
72,033 - MIT1002_04206 0.38 +0.3
72,057 + MIT1002_04206 0.40 -0.7
72,065 - MIT1002_04206 0.41 +0.8
72,187 + MIT1002_04206 0.53 +1.0
72,187 + MIT1002_04206 0.53 +0.8
72,266 + MIT1002_04206 0.61 +1.6
72,273 + MIT1002_04206 0.61 +0.0
72,274 + MIT1002_04206 0.61 -0.9
72,274 - MIT1002_04206 0.61 -0.0
72,280 + MIT1002_04206 0.62 -0.1
72,288 - MIT1002_04206 0.63 +0.7
72,310 - MIT1002_04206 0.65 +0.7
72,310 - MIT1002_04206 0.65 -0.2
72,476 - MIT1002_04206 0.81 +0.1
72,542 + MIT1002_04206 0.88 +0.4
72,550 - MIT1002_04206 0.89 +0.1
72,575 - +0.6
72,602 + -0.1
72,739 - +1.4
72,739 - -0.1
72,883 + -0.8
72,927 + +1.8
72,934 - -0.2
72,941 - -0.7
72,941 - +0.4
73,004 + MIT1002_04207 0.13 -0.7
73,004 + MIT1002_04207 0.13 -0.2
73,004 + MIT1002_04207 0.13 +0.5
73,004 + MIT1002_04207 0.13 +0.4
73,063 + MIT1002_04207 0.18 -1.2
73,075 - MIT1002_04207 0.20 +0.8
73,075 - MIT1002_04207 0.20 +0.3
73,128 - MIT1002_04207 0.25 +0.8
73,181 - MIT1002_04207 0.30 -1.0
73,196 - MIT1002_04207 0.31 -2.4
73,208 - MIT1002_04207 0.32 +0.2
73,279 - MIT1002_04207 0.39 +1.3
73,304 + MIT1002_04207 0.41 -0.3
73,304 + MIT1002_04207 0.41 +0.9
73,304 + MIT1002_04207 0.41 -1.7
73,304 + MIT1002_04207 0.41 -0.3
73,312 - MIT1002_04207 0.42 +0.2
73,312 - MIT1002_04207 0.42 +0.2
73,312 - MIT1002_04207 0.42 -1.2
73,312 - MIT1002_04207 0.42 +1.5
73,324 - MIT1002_04207 0.43 -0.3
73,431 + MIT1002_04207 0.53 -0.5
73,431 + MIT1002_04207 0.53 -3.0
73,431 + MIT1002_04207 0.53 +1.0
73,431 + MIT1002_04207 0.53 +0.3
73,432 - MIT1002_04207 0.54 -0.3
73,439 - MIT1002_04207 0.54 -0.5
73,452 + MIT1002_04207 0.55 -0.4
73,468 - MIT1002_04207 0.57 -1.9
73,496 - MIT1002_04207 0.60 -0.9
73,503 + MIT1002_04207 0.60 +0.2
73,513 + MIT1002_04207 0.61 -0.1
73,536 - MIT1002_04207 0.63 +0.1
73,595 + MIT1002_04207 0.69 -0.5
73,595 + MIT1002_04207 0.69 -0.7
73,595 + MIT1002_04207 0.69 +0.1
73,608 - MIT1002_04207 0.70 -0.1
73,693 - MIT1002_04207 0.78 +1.4
73,778 + MIT1002_04207 0.86 +0.0
73,785 + MIT1002_04207 0.87 -0.8
73,785 + MIT1002_04207 0.87 +0.7
73,853 - +0.2
73,853 - +1.9
73,855 + +0.1
73,901 + +1.1
73,901 + -1.1
73,901 + -1.2
73,909 - -0.7
73,909 - -0.7
73,942 - -0.4
74,075 + -1.1

Or see this region's nucleotide sequence