Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03799 and MIT1002_03800 overlap by 11 nucleotides MIT1002_03800 and MIT1002_03801 are separated by 187 nucleotides MIT1002_03801 and MIT1002_03802 are separated by 101 nucleotides MIT1002_03802 and MIT1002_03803 are separated by 126 nucleotides
MIT1002_03799: MIT1002_03799 - Zinc uptake regulation protein, at 4,246,310 to 4,246,783
_03799
MIT1002_03800: MIT1002_03800 - hypothetical protein, at 4,246,773 to 4,247,237
_03800
MIT1002_03801: MIT1002_03801 - secondary thiamine-phosphate synthase enzyme, at 4,247,425 to 4,247,664
_03801
MIT1002_03802: MIT1002_03802 - Outer membrane porin F precursor, at 4,247,766 to 4,248,962
_03802
MIT1002_03803: MIT1002_03803 - Replicative DNA helicase, at 4,249,089 to 4,250,474
_03803
Position (kb) 4247
4248
4249 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4246.809 kb on + strand at 4246.902 kb on - strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.921 kb on + strand, within MIT1002_03800 at 4246.929 kb on - strand, within MIT1002_03800 at 4246.936 kb on + strand, within MIT1002_03800 at 4246.944 kb on - strand, within MIT1002_03800 at 4246.973 kb on + strand, within MIT1002_03800 at 4246.975 kb on + strand, within MIT1002_03800 at 4247.003 kb on - strand, within MIT1002_03800 at 4247.093 kb on + strand, within MIT1002_03800 at 4247.094 kb on + strand, within MIT1002_03800 at 4247.125 kb on - strand, within MIT1002_03800 at 4247.167 kb on - strand, within MIT1002_03800 at 4247.202 kb on + strand at 4247.319 kb on + strand at 4247.327 kb on - strand at 4247.363 kb on - strand at 4247.405 kb on + strand at 4247.413 kb on - strand at 4247.496 kb on - strand, within MIT1002_03801 at 4247.531 kb on + strand, within MIT1002_03801 at 4247.531 kb on + strand, within MIT1002_03801 at 4247.532 kb on - strand, within MIT1002_03801 at 4247.549 kb on - strand, within MIT1002_03801 at 4247.549 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.596 kb on - strand, within MIT1002_03801 at 4247.611 kb on + strand, within MIT1002_03801 at 4247.650 kb on - strand at 4247.834 kb on + strand at 4247.837 kb on - strand at 4247.839 kb on + strand at 4247.839 kb on + strand at 4247.907 kb on - strand, within MIT1002_03802 at 4247.997 kb on - strand, within MIT1002_03802 at 4248.085 kb on - strand, within MIT1002_03802 at 4248.174 kb on + strand, within MIT1002_03802 at 4248.264 kb on - strand, within MIT1002_03802 at 4248.264 kb on - strand, within MIT1002_03802 at 4248.438 kb on - strand, within MIT1002_03802 at 4248.519 kb on - strand, within MIT1002_03802 at 4248.519 kb on - strand, within MIT1002_03802 at 4248.519 kb on - strand, within MIT1002_03802 at 4248.738 kb on + strand, within MIT1002_03802 at 4248.909 kb on - strand at 4248.927 kb on + strand at 4248.927 kb on + strand at 4249.055 kb on - strand at 4249.066 kb on + strand at 4249.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1 remove 4,246,809 + -0.1 4,246,902 - MIT1002_03800 0.28 -1.1 4,246,921 + MIT1002_03800 0.32 +0.4 4,246,921 + MIT1002_03800 0.32 +1.2 4,246,921 + MIT1002_03800 0.32 -2.7 4,246,921 + MIT1002_03800 0.32 -0.5 4,246,929 - MIT1002_03800 0.34 -0.2 4,246,936 + MIT1002_03800 0.35 -0.0 4,246,944 - MIT1002_03800 0.37 -0.1 4,246,973 + MIT1002_03800 0.43 +1.2 4,246,975 + MIT1002_03800 0.43 +0.5 4,247,003 - MIT1002_03800 0.49 +0.0 4,247,093 + MIT1002_03800 0.69 +0.0 4,247,094 + MIT1002_03800 0.69 +0.1 4,247,125 - MIT1002_03800 0.76 -0.5 4,247,167 - MIT1002_03800 0.85 +1.1 4,247,202 + +0.5 4,247,319 + -0.7 4,247,327 - -1.9 4,247,363 - +0.2 4,247,405 + -0.2 4,247,413 - +0.2 4,247,496 - MIT1002_03801 0.30 -0.1 4,247,531 + MIT1002_03801 0.44 -0.7 4,247,531 + MIT1002_03801 0.44 -0.8 4,247,532 - MIT1002_03801 0.45 +0.3 4,247,549 - MIT1002_03801 0.52 +0.1 4,247,549 - MIT1002_03801 0.52 +1.2 4,247,596 - MIT1002_03801 0.71 -0.3 4,247,596 - MIT1002_03801 0.71 -0.0 4,247,596 - MIT1002_03801 0.71 +0.8 4,247,611 + MIT1002_03801 0.78 +0.1 4,247,650 - +0.8 4,247,834 + -0.3 4,247,837 - +0.2 4,247,839 + -2.0 4,247,839 + -2.9 4,247,907 - MIT1002_03802 0.12 +1.2 4,247,997 - MIT1002_03802 0.19 -2.8 4,248,085 - MIT1002_03802 0.27 -0.8 4,248,174 + MIT1002_03802 0.34 -2.9 4,248,264 - MIT1002_03802 0.42 -2.9 4,248,264 - MIT1002_03802 0.42 -0.7 4,248,438 - MIT1002_03802 0.56 -0.7 4,248,519 - MIT1002_03802 0.63 -1.1 4,248,519 - MIT1002_03802 0.63 -1.1 4,248,519 - MIT1002_03802 0.63 -0.9 4,248,738 + MIT1002_03802 0.81 -2.8 4,248,909 - -1.1 4,248,927 + +0.4 4,248,927 + +0.1 4,249,055 - +0.9 4,249,066 + -0.5 4,249,112 + -0.1
Or see this region's nucleotide sequence