Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03706

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
4,138,530	-		MIT1002_03705	0.20	+1.5
4,138,549	-		MIT1002_03705	0.21	+1.0
4,138,578	-		MIT1002_03705	0.24	-0.2
4,138,629	+		MIT1002_03705	0.28	-0.9
4,138,658	+		MIT1002_03705	0.30	-1.2
4,138,658	-		MIT1002_03705	0.30	-0.2
4,138,708	+		MIT1002_03705	0.35	-0.4
4,138,778	+		MIT1002_03705	0.41	-1.0
4,138,786	-		MIT1002_03705	0.41	+1.8
4,138,793	-		MIT1002_03705	0.42	+0.0
4,138,793	-		MIT1002_03705	0.42	+0.2
4,138,825	+		MIT1002_03705	0.45	+1.2
4,138,825	+		MIT1002_03705	0.45	+1.0
4,138,831	-		MIT1002_03705	0.45	-1.9
4,138,865	+		MIT1002_03705	0.48	+0.2
4,138,865	+		MIT1002_03705	0.48	+1.3
4,138,890	+		MIT1002_03705	0.50	-0.1
4,138,950	+		MIT1002_03705	0.55	-3.1
4,139,026	-		MIT1002_03705	0.62	-0.6
4,139,028	+		MIT1002_03705	0.62	-0.1
4,139,139	+		MIT1002_03705	0.71	-0.4
4,139,189	-		MIT1002_03705	0.75	-0.1
4,139,337	-		MIT1002_03705	0.88	+1.1
4,139,356	-		MIT1002_03705	0.90	+1.2
4,139,615	+				+0.5
4,139,623	-				+0.8
4,139,623	-				-0.4
4,139,623	-				-0.3
4,139,679	-		MIT1002_03706	0.14	-0.1
4,139,762	+		MIT1002_03706	0.22	-0.6
4,139,770	-		MIT1002_03706	0.22	+0.5
4,139,788	+		MIT1002_03706	0.24	+0.1
4,139,845	+		MIT1002_03706	0.29	+1.3
4,139,845	+		MIT1002_03706	0.29	+0.1
4,139,853	-		MIT1002_03706	0.30	-0.4
4,139,853	-		MIT1002_03706	0.30	+1.1
4,139,867	+		MIT1002_03706	0.31	-0.1
4,139,982	-		MIT1002_03706	0.42	+0.6
4,139,989	+		MIT1002_03706	0.43	+0.7
4,140,001	+		MIT1002_03706	0.44	-0.5
4,140,011	+		MIT1002_03706	0.45	-0.4
4,140,093	+		MIT1002_03706	0.52	-1.9
4,140,107	+		MIT1002_03706	0.54	+0.3
4,140,110	+		MIT1002_03706	0.54	-2.2
4,140,120	+		MIT1002_03706	0.55	+0.1
4,140,128	-		MIT1002_03706	0.55	-0.1
4,140,142	-		MIT1002_03706	0.57	+0.6
4,140,214	+		MIT1002_03706	0.63	-0.0
4,140,269	-		MIT1002_03706	0.69	+0.5
4,140,317	+		MIT1002_03706	0.73	+0.3
4,140,354	+		MIT1002_03706	0.76	-1.7
4,140,354	+		MIT1002_03706	0.76	-1.1
4,140,392	+		MIT1002_03706	0.80	-0.5
4,140,404	+		MIT1002_03706	0.81	-0.1
4,140,420	-		MIT1002_03706	0.82	+0.2
4,140,439	+		MIT1002_03706	0.84	+0.1
4,140,478	+		MIT1002_03706	0.88	+0.1
4,140,478	+		MIT1002_03706	0.88	+2.1
4,140,486	-		MIT1002_03706	0.89	-1.8
4,140,498	+		MIT1002_03706	0.90	+1.2
4,140,511	+				+1.0
4,140,543	-				+1.4
4,140,545	+				+0.8
4,140,545	+				-0.0
4,140,553	-				-1.5
4,140,553	-				-0.3
4,140,565	+				-2.2
4,140,583	-				-0.3
4,140,642	-				+0.0
4,140,684	-				-0.1
4,140,697	-				-0.7
4,140,699	-				+0.8
4,140,755	-				-0.6
4,140,755	-				-0.3
4,140,760	-				+0.6
4,140,785	+				-1.5
4,140,822	+				+0.5
4,140,868	+				-0.0
4,140,875	+		MIT1002_03707	0.10	-0.6
4,140,883	-		MIT1002_03707	0.11	+1.3
4,140,885	+		MIT1002_03707	0.11	+0.9
4,140,890	+		MIT1002_03707	0.11	-0.5
4,140,938	+		MIT1002_03707	0.16	+1.5
4,140,940	+		MIT1002_03707	0.16	+0.3
4,140,946	-		MIT1002_03707	0.16	-0.8
4,140,947	+		MIT1002_03707	0.16	-2.7
4,140,951	-		MIT1002_03707	0.17	+0.4
4,140,980	+		MIT1002_03707	0.19	+0.0
4,140,988	-		MIT1002_03707	0.20	-0.1
4,141,009	-		MIT1002_03707	0.22	+0.8
4,141,096	+		MIT1002_03707	0.29	-0.1
4,141,207	-		MIT1002_03707	0.39	-1.2
4,141,209	-		MIT1002_03707	0.39	-1.6
4,141,214	-		MIT1002_03707	0.39	+0.1
4,141,354	+		MIT1002_03707	0.51	+0.1
4,141,417	+		MIT1002_03707	0.56	+0.8
4,141,422	+		MIT1002_03707	0.57	-0.1
4,141,448	-		MIT1002_03707	0.59	-0.2
4,141,450	-		MIT1002_03707	0.59	-0.3
4,141,540	-		MIT1002_03707	0.67	-1.3
4,141,572	+		MIT1002_03707	0.70	+0.4
4,141,572	-		MIT1002_03707	0.70	+0.1
4,141,581	-		MIT1002_03707	0.71	+0.6
4,141,586	-		MIT1002_03707	0.71	-1.3
4,141,602	-		MIT1002_03707	0.72	-0.5