Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03646

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1
4,078,928	+		MIT1002_03645	0.47	-0.1
4,079,099	-		MIT1002_03645	0.59	+0.7
4,079,151	-		MIT1002_03645	0.63	+1.9
4,079,181	+		MIT1002_03645	0.65	-1.1
4,079,199	-		MIT1002_03645	0.66	-1.1
4,079,209	+		MIT1002_03645	0.67	+0.3
4,079,217	-		MIT1002_03645	0.67	+0.8
4,079,230	-		MIT1002_03645	0.68	-0.2
4,079,234	-		MIT1002_03645	0.68	+0.4
4,079,254	+		MIT1002_03645	0.70	+0.7
4,079,254	+		MIT1002_03645	0.70	+0.3
4,079,262	-		MIT1002_03645	0.70	-0.9
4,079,297	-		MIT1002_03645	0.73	-0.5
4,079,322	+		MIT1002_03645	0.75	-0.8
4,079,364	+		MIT1002_03645	0.77	+0.7
4,079,381	-		MIT1002_03645	0.79	+1.6
4,079,402	-		MIT1002_03645	0.80	-3.1
4,079,471	+		MIT1002_03645	0.85	-0.5
4,079,471	+		MIT1002_03645	0.85	+0.0
4,079,479	-		MIT1002_03645	0.85	-0.5
4,079,479	-		MIT1002_03645	0.85	+0.3
4,079,493	-		MIT1002_03645	0.86	+0.5
4,079,509	+		MIT1002_03645	0.87	+1.4
4,079,527	-		MIT1002_03645	0.89	+0.8
4,079,564	+				-0.5
4,079,564	+				+0.9
4,079,572	-				-0.5
4,079,693	-				-3.0
4,079,694	+				-0.1
4,079,709	+				-1.5
4,079,717	-				+0.9
4,079,825	+				-0.2
4,079,825	+				-0.2
4,079,832	+				+1.0
4,079,832	+				+1.4
4,079,833	-				+0.6
4,079,833	-				-0.0
4,080,014	-		MIT1002_03646	0.16	+0.0
4,080,014	-		MIT1002_03646	0.16	-0.4
4,080,109	+		MIT1002_03646	0.21	-1.6
4,080,109	+		MIT1002_03646	0.21	+0.5
4,080,117	-		MIT1002_03646	0.21	+1.0
4,080,275	-		MIT1002_03646	0.29	+1.7
4,080,275	-		MIT1002_03646	0.29	+0.4
4,080,307	+		MIT1002_03646	0.31	-2.0
4,080,308	+		MIT1002_03646	0.31	-0.2
4,080,377	+		MIT1002_03646	0.34	+0.5
4,080,377	+		MIT1002_03646	0.34	-0.1
4,080,385	-		MIT1002_03646	0.34	+1.0
4,080,407	-		MIT1002_03646	0.36	+0.4
4,080,420	+		MIT1002_03646	0.36	-0.1
4,080,445	+		MIT1002_03646	0.37	-2.3
4,080,453	-		MIT1002_03646	0.38	-0.2
4,080,604	+		MIT1002_03646	0.45	+0.5
4,080,617	-		MIT1002_03646	0.46	+2.8
4,080,723	+		MIT1002_03646	0.51	-2.3
4,080,797	+		MIT1002_03646	0.55	+1.7
4,080,807	-		MIT1002_03646	0.56	+0.0
4,080,809	+		MIT1002_03646	0.56	-0.5
4,080,809	+		MIT1002_03646	0.56	+1.2
4,080,819	+		MIT1002_03646	0.56	-3.2
4,080,848	+		MIT1002_03646	0.58	+0.8
4,080,882	+		MIT1002_03646	0.60	+1.6
4,080,912	+		MIT1002_03646	0.61	+0.1
4,080,920	-		MIT1002_03646	0.61	-1.3
4,080,990	-		MIT1002_03646	0.65	+0.3
4,081,161	+		MIT1002_03646	0.74	+0.3
4,081,169	-		MIT1002_03646	0.74	-2.2
4,081,169	-		MIT1002_03646	0.74	+0.6
4,081,179	-		MIT1002_03646	0.74	+0.7
4,081,181	+		MIT1002_03646	0.75	+0.2
4,081,433	+		MIT1002_03646	0.87	+0.2
4,081,536	+				-0.7
4,081,536	+				-1.2
4,081,544	-				-0.2
4,081,544	-				-0.5
4,081,545	+				+0.3
4,081,556	+				-1.0
4,081,564	-				-0.2
4,081,564	-				-1.5
4,081,575	-				+0.7
4,081,624	-				-2.0
4,081,641	-				+0.9
4,081,648	+				+1.3
4,081,796	+				-1.0
4,081,944	+		MIT1002_03648	0.17	-3.3
4,081,973	+		MIT1002_03648	0.21	+0.2
4,082,002	-		MIT1002_03648	0.25	+0.4
4,082,030	-		MIT1002_03648	0.29	-2.2
4,082,174	+		MIT1002_03648	0.47	+0.3
4,082,176	+		MIT1002_03648	0.47	+0.7
4,082,184	-		MIT1002_03648	0.49	+0.8
4,082,201	+		MIT1002_03648	0.51	-1.8
4,082,235	+		MIT1002_03648	0.55	+1.0
4,082,291	-		MIT1002_03648	0.62	-0.1
4,082,343	+		MIT1002_03648	0.69	-0.9
4,082,368	-		MIT1002_03648	0.72	-1.0
4,082,392	+		MIT1002_03648	0.75	-0.2
4,082,400	-		MIT1002_03648	0.77	-0.0
4,082,415	+		MIT1002_03648	0.78	-0.1
4,082,447	-		MIT1002_03648	0.83	-2.9
4,082,470	-		MIT1002_03648	0.86	+1.2
4,082,477	+		MIT1002_03648	0.87	-0.2
4,082,542	-				-0.6
4,082,543	+				+0.9
4,082,549	+				-2.7
4,082,587	-				-0.1
4,082,624	+				-0.3
4,082,624	+				+1.5
4,082,668	-				+0.8